Example usage for org.apache.commons.lang.time DateFormatUtils format

Introduction

In this page you can find the example usage for org.apache.commons.lang.time DateFormatUtils format.

Prototype

public static String format(Date date, String pattern) 

Source Link

Document

Formats a date/time into a specific pattern.

Usage

From source file:org.isatools.isatab.export.sra.SraExporter.java

/**
 * Builds the SRA study from the ISATAB study, assuming this has some ENA assays.
 *
 * @return the SRA STUDY element that is to be used to build the corresponding XML study file.
 *///  www. j  a v  a2 s .  co m
private STUDYDocument buildExportedStudy(Study study) {
    final String studyAcc = study.getAcc();
    final Investigation investigation = study.getUniqueInvestigation();

    STUDYDocument xstudyDoc = STUDYDocument.Factory.newInstance();
    StudyType xstudy = StudyType.Factory.newInstance();
    xstudy.setAlias(studyAcc);

    StudyType.DESCRIPTOR xdescriptor = StudyType.DESCRIPTOR.Factory.newInstance();
    String description = StringUtils.trimToNull(study.getDescription());

    // TODO: constant class
    // Commented out, need to add a test checking if there is a BII accession number
    //String backLink = StringUtils.trimToNull(System.getProperty("bioinvindex.converters.sra.backlink", null));
    //if (backLink != null) {
    //    backLink = backLink.replaceAll("\\$\\{study-acc\\}", studyAcc);
    //    description = backLink + (description == null ? "" : " ") + description;
    //}

    xdescriptor.setCENTERNAME(centerName);
    xstudy.setCenterName(centerName);
    xstudy.setBrokerName(brokerName);

    String centerPrjName = StringUtils
            .trimToNull(study.getSingleAnnotationValue("comment:SRA Center Project Name"));
    if (centerPrjName == null) {
        throw new TabMissingValueException(MessageFormat.format(
                "The study ''{0}'' has no 'SRA Center Project Name', cannot export to SRA format",
                study.getAcc()));
    }
    xdescriptor.setCENTERPROJECTNAME(centerPrjName);

    // TODO: remove, it's deprecated.
    //     String prjId = StringUtils.trimToNull ( study.getSingleAnnotationValue ( "comment:SRA Project ID" ) );
    //     if ( centerPrjName == null )
    //        throw new TabMissingValueException ( MessageFormat.format (
    //           "The study ''{0}'' has no 'SRA Project ID', cannot export to SRA format",
    //           study.getAcc ()
    //     ));
    //     xdescriptor.setPROJECTID ( new BigInteger ( prjId ) );

    String title = StringUtils.trimToNull(study.getTitle());
    if (title != null) {
        xdescriptor.setSTUDYTITLE(title);
    }

    STUDYATTRIBUTES xattrs = STUDYATTRIBUTES.Factory.newInstance();
    STUDYLINKS xlinks = STUDYLINKS.Factory.newInstance();

    Date subDate = study.getSubmissionDate();
    if (subDate != null) {
        AttributeType xdate = buildStudyAttribute("Submission Date",
                DateFormatUtils.format(subDate, "dd/MM/yyyy"), null);
        xattrs.addNewSTUDYATTRIBUTE();
        xattrs.setSTUDYATTRIBUTEArray(xattrs.sizeOfSTUDYATTRIBUTEArray() - 1, xdate);
    }

    Date relDate = study.getReleaseDate();
    if (relDate != null) {
        AttributeType xdate = buildStudyAttribute("Release Date", DateFormatUtils.format(relDate, "dd/MM/yyyy"),
                null);
        xattrs.addNewSTUDYATTRIBUTE();
        xattrs.setSTUDYATTRIBUTEArray(xattrs.sizeOfSTUDYATTRIBUTEArray() - 1, xdate);
    }

    {
        AttributeType xacc = buildStudyAttribute("BII Study Accession", studyAcc, null);
        xattrs.addNewSTUDYATTRIBUTE();
        xattrs.setSTUDYATTRIBUTEArray(xattrs.sizeOfSTUDYATTRIBUTEArray() - 1, xacc);
    }

    if (investigation != null) {
        String invAcc = investigation.getAcc();
        AttributeType xacc = buildStudyAttribute("BII Investigation Accession", invAcc, null);
        xattrs.addNewSTUDYATTRIBUTE();
        xattrs.setSTUDYATTRIBUTEArray(xattrs.sizeOfSTUDYATTRIBUTEArray() - 1, xacc);
    }

    String studyDescr = StringUtils.trimToNull(study.getDescription());
    if (studyDescr != null) {
        xdescriptor.setSTUDYDESCRIPTION(studyDescr);
    }

    Collection<Design> designs = study.getDesigns();
    if (designs == null || designs.isEmpty()) {
        throw new TabMissingValueException(MessageFormat
                .format("Study ''{0}'' has no study design, cannot be exported to SRA format", studyAcc));
    }
    Design design = designs.iterator().next();

    // Try to see if the ISATAB study type is listed in the SRA schema, use 'other' otherwise.
    // TODO: ontology term
    // TODO: check on the assay type to determine nature of the study design. for example,
    // TODO: if measurement type = environmental gene survey, study design = METAGENOMICS

    STUDYTYPE xstudyType = STUDYTYPE.Factory.newInstance();
    String designStr = design.getValue();
    ExistingStudyType.Enum xdesign = ExistingStudyType.Enum.forString(designStr);
    if (designStr == null) {
        xstudyType.setExistingStudyType(xdesign);
    } else {
        xstudyType.setExistingStudyType(ExistingStudyType.OTHER);
        xstudyType.setNewStudyType(designStr);
    }
    xdescriptor.setSTUDYTYPE(xstudyType);
    xstudy.setDESCRIPTOR(xdescriptor);

    for (Contact contact : study.getContacts()) {
        buildExportedContact(contact, xattrs, false);
    }
    if (investigation != null) {
        for (Contact contact : investigation.getContacts()) {
            buildExportedContact(contact, xattrs, true);
        }
    }

    for (Publication contact : study.getPublications()) {
        buildExportedPublication(contact, xattrs, xlinks, false);
    }
    if (investigation != null) {
        for (Publication contact : investigation.getPublications()) {
            buildExportedPublication(contact, xattrs, xlinks, true);
        }
    }

    //TODO: BII link, protocols

    if (xattrs.sizeOfSTUDYATTRIBUTEArray() != 0) {
        xstudy.setSTUDYATTRIBUTES(xattrs);
    }
    if (xlinks.sizeOfSTUDYLINKArray() != 0) {
        xstudy.setSTUDYLINKS(xlinks);
    }

    if (description != null) {
        xdescriptor.setSTUDYDESCRIPTION(description);
        xstudy.setDESCRIPTOR(xdescriptor);
    }

    xstudyDoc.setSTUDY(xstudy);
    return xstudyDoc;
}

---

From source file:org.jumpmind.metl.core.runtime.flow.FlowRuntime.java

public static Map<String, String> getFlowParameters(Map<String, String> params, Agent agent,
        AgentDeployment agentDeployment) {
    List<AgentDeploymentParameter> deployParameters = agentDeployment.getAgentDeploymentParameters();
    List<AgentParameter> agentParameters = agent.getAgentParameters();
    if (agentParameters != null) {
        for (AgentParameter agentParameter : agentParameters) {
            params.put(agentParameter.getName(), agentParameter.getValue());
        }//  www.j  a v  a2s. co m
    }
    if (deployParameters != null) {
        for (AgentDeploymentParameter deployParameter : deployParameters) {
            params.put(deployParameter.getName(), deployParameter.getValue());
        }
    }
    Date date = new Date();
    params.put("_agentName", agent.getName());
    params.put("_deploymentName", agentDeployment.getName());
    params.put("_flowName", agentDeployment.getFlow().getName());
    params.put("_host", agent.getHost());
    params.put("_date", DateFormatUtils.format(date, DATE_FORMAT));
    params.put("_time", DateFormatUtils.format(date, TIME_FORMAT));
    params.put("_startDate", DateFormatUtils.format(date, DATE_FORMAT));
    params.put("_startTime", DateFormatUtils.format(date, TIME_FORMAT));
    return params;
}

---

From source file:org.jumpmind.metl.core.runtime.flow.FlowRuntime.java

protected void sendNotifications(Notification.EventType eventType) {
    if (notifications != null && notifications.size() > 0) {
        Transport transport = null;//from   w w  w .  ja v  a 2 s .c o  m
        Date date = new Date();
        flowParameters.put("_date", DateFormatUtils.format(date, DATE_FORMAT));
        flowParameters.put("_time", DateFormatUtils.format(date, TIME_FORMAT));

        try {
            for (Notification notification : notifications) {
                if (notification.getEventType().equals(eventType.toString())) {
                    log.info("Sending notification '" + notification.getName() + "' of level '"
                            + notification.getLevel() + "' and type '" + notification.getNotifyType() + "'");
                    transport = mailSession.getTransport();
                    MimeMessage message = new MimeMessage(mailSession.getSession());
                    message.setSentDate(new Date());
                    message.setRecipients(RecipientType.BCC, notification.getRecipients());
                    message.setSubject(
                            FormatUtils.replaceTokens(notification.getSubject(), flowParameters, true));
                    message.setText(FormatUtils.replaceTokens(notification.getMessage(), flowParameters, true));
                    try {
                        transport.sendMessage(message, message.getAllRecipients());
                    } catch (MessagingException e) {
                        log.error("Failure while sending notification", e);
                    }
                }
            }
        } catch (MessagingException e) {
            log.error("Failure while preparing notification", e);
        } finally {
            mailSession.closeTransport(transport);
        }
    }
}

---

From source file:org.jumpmind.symmetric.io.data.transform.VariableColumnTransform.java

public String transform(IDatabasePlatform platform, DataContext context, TransformColumn column,
        TransformedData data, Map<String, String> sourceValues, String newValue, String oldValue)
        throws IgnoreColumnException, IgnoreRowException {
    String varName = column.getTransformExpression();
    if (varName != null) {
        if (varName.equalsIgnoreCase(OPTION_TIMESTAMP)) {
            return DateFormatUtils.format(System.currentTimeMillis(), TS_PATTERN);
        } else if (varName.equalsIgnoreCase(OPTION_DATE)) {
            return DateFormatUtils.format(System.currentTimeMillis(), DATE_PATTERN);
        } else if (varName.equalsIgnoreCase(OPTION_SOURCE_NODE_ID)) {
            return context.getBatch().getSourceNodeId();
        } else if (varName.equalsIgnoreCase(OPTION_TARGET_NODE_ID)) {
            return context.getBatch().getTargetNodeId();
        } else if (varName.equalsIgnoreCase(OPTION_OLD_VALUE)) {
            return oldValue;
        } else if (varName.equals(OPTION_NULL)) {
            return null;
        } else if (varName.equals(OPTION_SOURCE_TABLE_NAME)) {
            Data csvData = (Data) context.get(Constants.DATA_CONTEXT_CURRENT_CSV_DATA);
            if (csvData != null && csvData.getTriggerHistory() != null) {
                return csvData.getTriggerHistory().getSourceTableName();
            }//  www  . j ava 2s  .co  m
        } else if (varName.equals(OPTION_SOURCE_CATALOG_NAME)) {
            Data csvData = (Data) context.get(Constants.DATA_CONTEXT_CURRENT_CSV_DATA);
            if (csvData != null && csvData.getTriggerHistory() != null) {
                return csvData.getTriggerHistory().getSourceCatalogName();
            }

        } else if (varName.equals(OPTION_SOURCE_SCHEMA_NAME)) {
            Data csvData = (Data) context.get(Constants.DATA_CONTEXT_CURRENT_CSV_DATA);
            if (csvData != null && csvData.getTriggerHistory() != null) {
                return csvData.getTriggerHistory().getSourceSchemaName();
            }
        }
    }
    return null;
}

---

From source file:org.kuali.kfs.module.endow.businessobject.options.CurrentProcessDateValuesFinder.java

public String getValue() {
    // get the current date from the service
    Date date = SpringContext.getBean(KEMService.class).getCurrentDate();

    // remove the time component
    date = DateUtils.truncate(date, Calendar.DAY_OF_MONTH);

    // format it as expected
    return DateFormatUtils.format(date, "MM/dd/yyyy");
}

---

From source file:org.kuali.kfs.sys.businessobject.defaultvalue.CurrentDateMMDDYYYYFinder.java

public String getValue() {
    // get the current date from the service
    Date date = SpringContext.getBean(DateTimeService.class).getCurrentDate();

    // remove the time component
    date = DateUtils.truncate(date, Calendar.DAY_OF_MONTH);

    // format it as expected
    return DateFormatUtils.format(date, "MM/dd/yyyy");
}

---

From source file:org.kuali.kpme.core.kfs.sys.businessobject.defaultvalue.CurrentDateMMDDYYYYFinder.java

public String getValue() {
    // get the current date from the service
    // Date date = SpringContext.getBean(DateTimeService.class).getCurrentDate();
    Date date = CoreApiServiceLocator.getDateTimeService().getCurrentDate();

    // remove the time component
    date = DateUtils.truncate(date, Calendar.DAY_OF_MONTH);

    // format it as expected
    return DateFormatUtils.format(date, "MM/dd/yyyy");
}

---

From source file:org.kuali.kra.budget.printing.xmlstream.BudgetBaseStream.java

/**
 * This method gets ReportHeaderType from first budgetPeriod.It set all the
 * data for RportHeader from budgetPriod and budgetParent
 * // w  w  w  .java  2s  . c o m
 * @param budgetParent
 * @return reportTypeHeader
 */
protected ReportHeaderType getReportHeaderTypeForCumulativeReport(BudgetParent budgetParent) {
    ReportHeaderType reportHeaderType = ReportHeaderType.Factory.newInstance();
    if (budgetParent != null) {
        reportHeaderType.setParentTypeName(budgetParent.getParentTypeName());
        reportHeaderType.setProposalNumber(budgetParent.getParentNumber());
    }
    if (budgetParent != null && budgetParent.getParentTitle() != null) {
        reportHeaderType.setProposalTitle(budgetParent.getParentTitle());
    }
    String principleInvestigatorName = budgetParent.getParentPIName();
    if (principleInvestigatorName != null) {
        reportHeaderType.setPIName(principleInvestigatorName);
    }
    if (budgetPeriod.getVersionNumber() != null) {
        reportHeaderType.setBudgetVersion(budget.getBudgetVersionNumber().intValue());
    }
    if (budgetPeriod.getStartDate() != null) {
        reportHeaderType.setPeriodStartDate(DateFormatUtils.format(budgetPeriod.getStartDate(), DATE_FORMAT));
    }
    if (budgetPeriod.getEndDate() != null) {
        reportHeaderType.setPeriodEndDate(DateFormatUtils.format(budgetPeriod.getEndDate(), DATE_FORMAT));
    }
    if (budgetPeriod.getBudgetPeriod() != null) {
        reportHeaderType.setPeriod(budgetPeriod.getBudgetPeriod());
    }
    reportHeaderType.setCreateDate(dateTimeService.getCurrentDate().toString());
    if (budget.getComments() != null) {
        if (budget.getPrintBudgetCommentFlag() != null && budget.getPrintBudgetCommentFlag().equals("true"))
            reportHeaderType.setComments(budget.getComments());
    }

    budget.setPrintBudgetCommentFlag(null);

    return reportHeaderType;
}

---

From source file:org.kuali.kra.budget.printing.xmlstream.BudgetBaseStream.java

/**
 * This method gets reportType for LASalary by setting data from
 * reportTypeVO and passed parameters//www .j  a v a2  s  .c  o m
 * 
 */
private ReportType getReportTypeForLASalary(BudgetDecimal fringe, BudgetDecimal salary,
        BudgetDecimal calculatedCost, BudgetDecimal calculatedCostSharing, ReportTypeVO reportTypeVO,
        Date startDate, Date endDate) {
    ReportType reportType = ReportType.Factory.newInstance();
    reportType.setBudgetCategoryDescription(LAB_ALLOCATION);
    reportType.setPersonName(ALLOCATED_ADMIN_SUPPORT);
    reportType.setPercentEffort(100);
    reportType.setPercentCharged(100);
    reportType.setBudgetCategoryCode(99);
    reportType.setInvestigatorFlag(3);
    reportType.setStartDate(DateFormatUtils.format(startDate, DATE_FORMAT_MMDDYY));
    reportType.setEndDate(DateFormatUtils.format(endDate, DATE_FORMAT_MMDDYY));
    reportType.setCostSharingAmount(calculatedCostSharing.doubleValue());
    reportType.setCalculatedCost(calculatedCost.doubleValue());
    reportType.setFringe(fringe.doubleValue());
    reportType.setCostElementDescription(reportTypeVO.getCostElementDesc());
    reportType.setSalaryRequested(salary.doubleValue());
    return reportType;
}

---

From source file:org.kuali.kra.budget.printing.xmlstream.BudgetBaseStream.java

private ReportType getReportTypeForRateAndBase(Date startDate, Date endDate, BudgetDecimal calculatedCost,
        BudgetDecimal salaryRequested, ReportTypeVO reportTypeVO) {
    ReportType reportType = ReportType.Factory.newInstance();
    reportType.setSalaryRequested(salaryRequested.doubleValue());
    reportType.setCalculatedCost(calculatedCost.doubleValue());
    reportType.setStartDate(DateFormatUtils.format(startDate, DATE_FORMAT));
    reportType.setEndDate(DateFormatUtils.format(endDate, DATE_FORMAT));
    reportType.setAppliedRate(reportTypeVO.getAppliedRate().doubleValue());
    reportType.setRateClassDesc(reportTypeVO.getRateClassDesc());
    reportType.setRateTypeDesc(reportTypeVO.getRateTypeDesc());
    reportType.setOnOffCampus(reportTypeVO.getOnOffCampusFlag());
    return reportType;
}

---

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