Example usage for org.apache.commons.lang.time StopWatch toString

Introduction

In this page you can find the example usage for org.apache.commons.lang.time StopWatch toString.

Prototype

public String toString() 

Source Link

Document

Gets a summary of the time that the stopwatch recorded as a string.

The format used is ISO8601-like, hours:minutes:seconds.milliseconds.

Usage

From source file:pt.ua.tm.neji.batch.FileBatchExecutor.java

@Override
public void run(Class<? extends Processor> processorCls, Context context, Object... args) throws NejiException {
    //        System.setProperty("file.encoding", "UTF-8");

    logger.info("Initializing context...");
    context.initialize();// www. j ava2  s. c  o  m
    logger.info("Installing multi-threading support...");
    context.addMultiThreadingSupport(numThreads);

    //        try {
    //        logger.info("Starting thread pool with support for {} threads...", numThreads);
    //            executor = Executors.newFixedThreadPool(numThreads, new ProcessorThreadFactory());

    StopWatch timer = new StopWatch();
    timer.start();

    //            CorpusDirWalker walker = new CorpusDirWalker(processorCls, context,
    //                    inputWildcardFilter, compressed, storeDocuments, args);
    //
    //        // Store processed corpora
    //            walker.processFiles();
    //
    //            executor.shutdown();
    //            executor.awaitTermination(Long.MAX_VALUE, TimeUnit.DAYS);

    filesProcessed = processFiles(inputFolderPath, inputWildcardFilter, outputFolderPath, numThreads, context,
            processorCls, args);

    logger.info("Stopped thread pool.");

    logger.info("Terminating context...");
    context.terminate();

    timer.stop();
    logger.info("Processed {} files in {}", filesProcessed, timer.toString());
    //        } catch (IOException | InterruptedException ex) {
    //            throw new NejiException("Problem processing pipeline.", ex);
    //        }
}

---

From source file:pt.ua.tm.neji.evaluation.craft.statistics.FolderBatchExecutor.java

public void run(final Context context) throws NejiException {
    logger.info("Initializing context...");
    context.initialize();/*from   w w w  .  ja  v a  2 s  .  c  om*/
    logger.info("Installing multi-threading support...");
    context.addMultiThreadingSupport(numThreads);

    ExecutorService executor;

    logger.info("Starting thread pool with support for {} threads...", numThreads);
    executor = Executors.newFixedThreadPool(numThreads);

    StopWatch timer = new StopWatch();
    timer.start();

    File inputFolder = new File(inputFolderPath);
    File[] files = inputFolder.listFiles(new FileUtil.Filter(new String[] { "txt" }));

    for (File file : files) {
        //            File a1File = new File(file.getAbsolutePath().replaceAll(".txt", ".ann"));
        File a1File = new File(file.getAbsolutePath().replaceAll(".txt", ".a1"));
        Processor processor = getDocumentProcessor(file, a1File, context);

        // Process entry
        executor.execute(processor);
    }

    executor.shutdown();
    try {
        executor.awaitTermination(Long.MAX_VALUE, TimeUnit.DAYS);
    } catch (InterruptedException e) {
        throw new RuntimeException(e);
    }
    logger.info("Stopped thread pool.");

    logger.info("Terminating context...");
    context.terminate();

    timer.stop();
    logger.info("Processed {} files in {}", processedCorpora.size(), timer.toString());
}

---

From source file:pt.ua.tm.neji.parsing.TestDynamicParsing.java

public void test() throws IOException, NejiException {
    Constants.verbose = true;//from  w w w.j av  a  2 s . c om
    StopWatch timer = new StopWatch();

    // create corpus
    Corpus corpus = new Corpus();
    corpus.setText(Variables.str1.gdep.text);

    // readies the parser
    Variables.parseWithDepParser(ParserLevel.TOKENIZATION, corpus, Variables.str1.gdep.text);

    // test if only tokenization was performed, no dependency features, lemmas, pos or chunks should exist
    timer.start();
    List<Sentence> sentences1 = Variables.parseWithDepParser(ParserLevel.TOKENIZATION, corpus,
            Variables.str1.gdep.text);
    timer.stop();
    logger.info("{}", sentences1.get(0).toExportFormat());
    logger.info("Tokenization took {}", timer.toString());
    timer.reset();

    // test if only lemmatization was performed, no dependency features, pos or chunks should exist
    timer.start();
    List<Sentence> sentences2 = Variables.parseWithDepParser(ParserLevel.LEMMATIZATION, corpus,
            Variables.str1.gdep.text);
    timer.stop();
    logger.info("{}", sentences2.get(0).toExportFormat());
    logger.info("Lemmatization took {}", timer.toString());
    timer.reset();

    // test if only pos was performed, no dependency features nor chunks should exist
    timer.start();
    List<Sentence> sentences3 = Variables.parseWithDepParser(ParserLevel.POS, corpus, Variables.str1.gdep.text);
    timer.stop();
    logger.info("{}", sentences3.get(0).toExportFormat());
    logger.info("POS took {}", timer.toString());
    timer.reset();

    // test if only chunking was performed, no dependency features should exist
    timer.start();
    List<Sentence> sentences4 = Variables.parseWithDepParser(ParserLevel.CHUNKING, corpus,
            Variables.str1.gdep.text);
    timer.stop();
    logger.info("{}", sentences4.get(0).toExportFormat());
    logger.info("Chunking took {}", timer.toString());
    timer.reset();

    // test if dependency parsing was performed
    timer.start();
    List<Sentence> sentences5 = Variables.parseWithDepParser(ParserLevel.DEPENDENCY, corpus,
            Variables.str1.gdep.text);
    timer.stop();
    logger.info("{}", sentences5.get(0).toExportFormat());
    logger.info("Dependency took {}", timer.toString());
    timer.reset();

}

---

From source file:pt.ua.tm.neji.train.batch.TrainBatchExecutor.java

@Override
public void run(Class<? extends Processor> processorCls, Context context, Object... args) throws NejiException {

    StopWatch timer = new StopWatch();

    logger.info("Initializing context...");
    context.initialize();//  w w w. j  ava2  s.c  om

    timer.start();

    if (((TrainContext) context).getPhase() == 1) { // Phase 1            

        // If input format requires annotations
        if (context.getConfiguration().getInputFormat().equals(InputFormat.BC2)) { // File + Annotations formats
            processFiles(inputSentencesFilePath, inputAnnotationsFilePath, (TrainContext) context, processorCls,
                    args);
        } else if (context.getConfiguration().getInputFormat().equals(InputFormat.A1)) { // Folder format
            processMultipleFiles(inputSentencesFilePath, numThreads, (TrainContext) context, processorCls,
                    args);
        } else { // File formats 
            processFiles(inputSentencesFilePath, (TrainContext) context, processorCls, args);
        }
    } else { // Phase 2

        // In this case inputSentencesFilePath contains the path to the corpus
        processFiles2((TrainContext) context, processorCls, args);
    }

    logger.info("Terminating context...");
    context.terminate();

    timer.stop();
    logger.info("Processed files in {}", timer.toString());
}

---

From source file:pt.ua.tm.neji.web.batch.ServerBatchExecutor.java

@Override
public void run(Class<? extends Processor> processorCls, Context context, Object... args) throws NejiException {

    // Add false positives
    if (service.getFalsePositives() != null) {
        byte[] fpByte = service.getFalsePositives().getBytes();
        context.getConfiguration().setFalsePositives(fpByte);
    } else {// www .ja  v a  2  s  . c om
        context.getConfiguration().setFalsePositives(null);
    }

    // Add semantic groups normalization (just when exporting, if format 
    // equals to null, then is an annotate)        
    if ((format != null) && !service.getGroupsNormalization().isEmpty()) {
        byte[] gnByte = service.getGroupsNormalizationByteArray();
        context.getConfiguration().setSemanticGroupsNormalization(gnByte);
    } else {
        context.getConfiguration().setSemanticGroupsNormalization(null);
    }

    // Distribution of output streams to the pipeline
    Map<OutputFormat, OutputStream> formatToStreamMap = new HashMap<>();
    List<OutputStream> outputStreams = new ArrayList<>();

    for (OutputFormat f : context.getConfiguration().getOutputFormats()) {
        OutputStream o = new ByteArrayOutputStream();
        formatToStreamMap.put(f, o);
        outputStreams.add(o);
    }

    Processor processor;
    Pipeline p = new DefaultPipeline(corpus);
    try {
        if (args != null && args.length != 0) {
            processor = newProcessor(processorCls, context, inputStream, outputStreams, service, p, groups,
                    filterGroups, args);
        } else {
            processor = newProcessor(processorCls, context, inputStream, outputStreams, service, p, groups,
                    filterGroups);
        }
    } catch (NejiException ex) {
        String m = "There was a problem creating the server processor";
        logger.error(m, ex);
        throw new RuntimeException(m, ex);
    }

    logger.info("");
    logger.info("Started processing a new document...");
    StopWatch timer = new StopWatch();
    timer.start();

    executor.execute(processor);

    try {
        synchronized (processor) {
            processor.wait();
        }
    } catch (InterruptedException ex) {
        throw new RuntimeException("There was a problem running the annotation service.", ex);
    }

    timer.stop();
    logger.info("Processed document in {}", timer.toString());

    if (format != null) {
        OutputStream output = formatToStreamMap.get(format);
        annotatedText = output.toString();
    }
}

---

From source file:terrastore.util.io.SerializersComparisonTest.java

@Test
public void testJavaSerializer() {
    Value value = new Value(VALUE.getBytes());
    JavaSerializer<Value> serializer = new JavaSerializer();
    StopWatch sw = new StopWatch();
    System.out.println("Warm-up...");
    for (int i = 0; i < 1000; i++) {
        serializer.serialize(value);//from  www.j  a v a2 s .c  o m
    }
    //
    System.out.println("Measuring...");
    sw.start();
    for (int i = 0; i < 100000; i++) {
        serializer.serialize(value);
    }
    sw.stop();
    System.out.println("Elapsed for testJavaSerializer: " + sw.toString());
}

---

From source file:terrastore.util.io.SerializersComparisonTest.java

@Test
public void testMsgPackSerializer() {
    Value value = new Value(VALUE.getBytes());
    MsgPackSerializer<Value> serializer = new MsgPackSerializer(false);
    StopWatch sw = new StopWatch();
    System.out.println("Warm-up...");
    for (int i = 0; i < 1000; i++) {
        serializer.serialize(value);/*  www.  j a  v a2s .  c  o m*/
    }
    //
    System.out.println("Measuring...");
    sw.start();
    for (int i = 0; i < 100000; i++) {
        serializer.serialize(value);
    }
    sw.stop();
    System.out.println("Elapsed for testMsgPackSerializer: " + sw.toString());
}

---

From source file:ubic.pubmedgate.mallet.FoldRunner.java

public void run() {
    train(training);//from   www.j  a  v a2  s. c om
    StopWatch watch = new StopWatch();
    watch.start();
    test(testing);
    watch.stop();
    log.info("Testing classifcation took " + watch.toString() + " for " + testing.size());
    done = true;
    if (notifyWhenDone != null) {
        synchronized (notifyWhenDone) {
            notifyWhenDone.notifyAll();
        }
    }
}

---

From source file:ubic.pubmedgate.resolve.CreateSupplementRDF.java

/**
 * @param args//from   w  w  w. jav a2 s  . com
 */
public static void main(String[] args) throws Exception {
    // load in resolutions
    boolean addSpecies = true;
    boolean reason = true;
    boolean useUnseenCorp = true;

    String file = "resolve.Lexicon.resolution.RDF.allComp";

    //String file = "resolve.Lexicon.RDF.allComp";
    file = Config.config.getString(file);
    Model modelLoad = ModelFactory.createDefaultModel();
    FileInputStream fis = new FileInputStream(file);
    modelLoad.read(fis, null);
    fis.close();

    if (addSpecies) {
        log.info("Adding species info");
        String storeLoc = Config.config.getString("whitetext.datastore.location");
        MakeLexiconRDFModel lexiModel = new MakeLexiconRDFModel();
        lexiModel.setModel(modelLoad);
        lexiModel.addSpeciesToModel(storeLoc, useUnseenCorp);
    }

    EvaluationRDFModel evaluationModel = new EvaluationRDFModel(modelLoad, reason);

    evaluationModel.loadManualMatches();
    evaluationModel.loadManualEvaluations();
    evaluationModel.loadAutomaticEvaluations();
    //
    //
    log.info("Writing out");
    StopWatch stopwatch = new StopWatch();
    stopwatch.start();
    evaluationModel.writeOut(Config.config.getString("resolve.supplement.RDF"));
    log.info(stopwatch.toString());

    evaluationModel.getStats();

}

---

From source file:ubic.pubmedgate.treetagger.TreeTaggerRunner.java

/**
 * @param args/*from   w  w  w .j  a va 2  s  .c om*/
 */
public static void main(String[] args) throws Exception {
    String annotationSet = "TreeTagger";
    // set GATE to use gate tokens instead of treetaggers tokenization,
    // untested
    boolean GATETokens = true;
    if (GATETokens) {
        annotationSet += "GATETokens";
    }

    StopWatch watch = new org.apache.commons.lang.time.StopWatch();
    watch.start();
    GateInterface p2g = new GateInterface();

    // Corpus corp = p2g.getCorp();
    // Corpus corp = p2g.getTrainingCorp();
    // Corpus corp = p2g.getNoAbbrevCorp();
    Corpus corp = p2g.getUnseenCorp();
    TreeTaggerRunner runner = new TreeTaggerRunner(annotationSet, GATETokens);

    // code to test a single document
    // Document test = ( Document ) p2g.getUnseenCorp().get( 17761 );
    // runner.runTreeTagger( new ConnectionsDocument( test ) );
    // System.exit( 1 );

    GateReseter reset = new GateReseter(GateInterface.getDocuments(corp), annotationSet);
    reset.reset();
    log.info("Done reseting");

    // 128 had a problem..
    // runner.runTreeTagger( new ConnectionsDocument( ( Document )
    // p2g.getTrainingCorp().get( 128 ) ) );
    // System.exit( 1 );

    System.out.println("Time:" + watch.toString());
    int i = 0;
    int errors = 0;
    for (ConnectionsDocument doc : GateInterface.getDocuments(corp)) {
        log.info(doc.getName());
        try {
            runner.runTreeTagger(doc);
            doc.sync();
        } catch (Exception e) {
            e.printStackTrace();
            errors++;
        }
        log.info("i:" + i++ + " Time:" + watch.toString() + " errors:" + errors);
    }

}

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