Example usage for org.apache.commons.lang3.tuple Pair getLeft

List of usage examples for org.apache.commons.lang3.tuple Pair getLeft

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Introduction

In this page you can find the example usage for org.apache.commons.lang3.tuple Pair getLeft.

Prototype

public abstract L getLeft();

Source Link

Document

Gets the left element from this pair.

When treated as a key-value pair, this is the key.

Usage

From source file:com.act.lcms.db.model.DeliveredStrainWell.java

public List<DeliveredStrainWell> insertFromPlateComposition(DB db, PlateCompositionParser parser, Plate p)
        throws SQLException, IOException {
    List<DeliveredStrainWell> results = new ArrayList<>();

    Map<Pair<String, String>, String> featuresTable = parser.getCompositionTables().get("well");
    /* The composition tables are usually constructed with well coordinates as the X and Y axes.  Amyris strain plates,
     * however, have the combined well coordinates in the first column and the msid/composition in related columns.
     * We'll collect the features in each row by traversing the per-cell entries in the parser's table and merging on
     * the first coordinate component. */
    Map<Pair<Integer, Integer>, Map<String, String>> wellToFeaturesMap = new HashMap<>();
    for (Map.Entry<Pair<String, String>, String> entry : featuresTable.entrySet()) {
        String wellCoordinates = entry.getKey().getLeft();
        String featureName = entry.getKey().getRight();
        String featureValue = entry.getValue();

        Pair<Integer, Integer> coordinates = Utils.parsePlateCoordinates(wellCoordinates);

        Map<String, String> featuresForWell = wellToFeaturesMap.get(coordinates);
        if (featuresForWell == null) {
            featuresForWell = new HashMap<>();
            wellToFeaturesMap.put(coordinates, featuresForWell);
        }//from  ww w .  j  ava  2  s.  c o m
        if (featuresForWell.containsKey(featureName)) {
            throw new RuntimeException(
                    String.format("Found duplicate feature %s for well %s", wellCoordinates, featureName));
        }
        featuresForWell.put(featureName, featureValue);
        // Also save the original well coordinates string.
        featuresForWell.put("well", wellCoordinates);
    }

    List<Map.Entry<Pair<Integer, Integer>, Map<String, String>>> sortedEntries = new ArrayList<>(
            wellToFeaturesMap.entrySet());
    Collections.sort(sortedEntries, new Comparator<Map.Entry<Pair<Integer, Integer>, Map<String, String>>>() {
        @Override
        public int compare(Map.Entry<Pair<Integer, Integer>, Map<String, String>> o1,
                Map.Entry<Pair<Integer, Integer>, Map<String, String>> o2) {
            return o1.getKey().compareTo(o2.getKey());
        }
    });

    for (Map.Entry<Pair<Integer, Integer>, Map<String, String>> entry : sortedEntries) {
        Pair<Integer, Integer> coords = entry.getKey();
        Map<String, String> attrs = entry.getValue();
        DeliveredStrainWell s = INSTANCE.insert(db, p.getId(), coords.getLeft(), coords.getRight(),
                attrs.get("well"), attrs.get("msid"), attrs.get("composition"));
        results.add(s);
    }

    return results;
}

From source file:com.epam.ngb.cli.manager.command.handler.http.FileRegistrationHandler.java

private RegistrationRequest createRegistrationRequest(Pair<String, String> file,
        BiologicalDataItemFormat format) {
    RegistrationRequest registration = new RegistrationRequest();
    registration.setName(fileName);//from ww  w.  j  a va2s .com
    registration.setPrettyName(prettyName);
    registration.setPath(file.getLeft());
    registration.setIndexPath(file.getRight());
    registration.setReferenceId(referenceId);
    registration.setType(BiologicalDataItemResourceType.getTypeFromPath(file.getKey()));

    if (file.getValue() != null) {
        registration.setIndexType(BiologicalDataItemResourceType.getTypeFromPath(file.getValue()));
    }

    if (format == BiologicalDataItemFormat.VCF || format == BiologicalDataItemFormat.GENE) {
        registration.setDoIndex(doIndex);
    }
    return registration;
}

From source file:at.gridtec.lambda4j.consumer.bi.ThrowableBiConsumer.java

/**
 * Applies this consumer to the given tuple.
 *
 * @param tuple The tuple to be applied to the consumer
 * @throws NullPointerException If given argument is {@code null}
 * @throws X Any throwable from this consumers action
 * @see org.apache.commons.lang3.tuple.Pair
 *///from   ww w. java 2 s  .  co m
default void acceptThrows(@Nonnull Pair<T, U> tuple) throws X {
    Objects.requireNonNull(tuple);
    acceptThrows(tuple.getLeft(), tuple.getRight());
}

From source file:com.spotify.heroic.shell.task.DeleteKeys.java

private AsyncFuture<Void> doDelete(final ShellIO io, final Parameters params, final MetricBackendGroup group,
        final QueryOptions options, final Stream<BackendKey> keys) {
    final StreamCollector<Pair<BackendKey, Long>, Void> collector = new StreamCollector<Pair<BackendKey, Long>, Void>() {
        @Override//from  ww  w  .j a v a  2s .co  m
        public void resolved(Pair<BackendKey, Long> result) throws Exception {
            if (params.verbose) {
                synchronized (io) {
                    io.out().println("Deleted: " + result.getLeft() + " (" + result.getRight() + ")");
                    io.out().flush();
                }
            }
        }

        @Override
        public void failed(Throwable cause) throws Exception {
            synchronized (io) {
                io.out().println("Delete Failed: " + cause);
                cause.printStackTrace(io.out());
                io.out().flush();
            }
        }

        @Override
        public void cancelled() throws Exception {
        }

        @Override
        public Void end(int resolved, int failed, int cancelled) throws Exception {
            io.out().println("Finished (resolved: " + resolved + ", failed: " + failed + ", " + "cancelled: "
                    + cancelled + ")");
            io.out().flush();
            return null;
        }
    };

    final AtomicInteger outstanding = new AtomicInteger(params.parallelism);

    final Object lock = new Object();

    final ResolvableFuture<Void> future = async.future();

    final Iterator<BackendKey> it = keys.iterator();

    for (int i = 0; i < params.parallelism; i++) {
        async.call(new Callable<Void>() {
            @Override
            public Void call() throws Exception {
                final BackendKey k;

                synchronized (lock) {
                    k = it.hasNext() ? it.next() : null;
                }

                if (k == null) {
                    if (outstanding.decrementAndGet() == 0) {
                        future.resolve(null);
                    }

                    return null;
                }

                deleteKey(group, k, options).onDone(new FutureDone<Pair<BackendKey, Long>>() {
                    @Override
                    public void failed(Throwable cause) throws Exception {
                        collector.failed(cause);
                    }

                    @Override
                    public void resolved(Pair<BackendKey, Long> result) throws Exception {
                        collector.resolved(result);
                    }

                    @Override
                    public void cancelled() throws Exception {
                        collector.cancelled();
                    }
                }).onFinished(this::call);

                return null;
            }
        });
    }

    return future.onFinished(keys::close);
}

From source file:io.lavagna.service.ProjectServiceTest.java

@Test
public void testFindBoardsByUserActivityWithPermissionsOnTest() {
    Pair<Project, User> prep = prepareOneActivity();

    List<ProjectWithEventCounts> projects = projectService.findProjectsActivityByUserInProjects(
            prep.getRight().getId(), Arrays.asList(prep.getLeft().getId()));
    Assert.assertEquals(1, projects.size());
}

From source file:enterprises.orbital.evekit.model.corporation.sync.ESICorporationIndustryJobSync.java

@Override
protected ESIAccountServerResult<List<GetCorporationsCorporationIdIndustryJobs200Ok>> getServerData(
        ESIAccountClientProvider cp) throws ApiException, IOException {
    IndustryApi apiInstance = cp.getIndustryApi();
    Pair<Long, List<GetCorporationsCorporationIdIndustryJobs200Ok>> result = pagedResultRetriever((page) -> {
        ESIThrottle.throttle(endpoint().name(), account);
        return apiInstance.getCorporationsCorporationIdIndustryJobsWithHttpInfo(
                (int) account.getEveCorporationID(), null, null, true, page, accessToken());
    });/*from   ww w.  java2  s .c o  m*/
    return new ESIAccountServerResult<>(
            result.getLeft() > 0 ? result.getLeft() : OrbitalProperties.getCurrentTime() + maxDelay(),
            result.getRight());
}

From source file:name.martingeisse.phunky.runtime.code.expression.array.ArrayElementExpression.java

@Override
public AssignmentTarget resolveAssignmentTarget(Environment environment) {
    Pair<Variable, String> variableArrayAndKey = obtainArrayVariableAndKey(environment);
    if (variableArrayAndKey == null) {
        environment.getRuntime().triggerError("trying to get element of non-array value", getLocation());
        return null;
    } else {/*  ww w. java  2 s  . c  o  m*/
        Variable arrayVariable = variableArrayAndKey.getLeft();
        String key = variableArrayAndKey.getRight();
        return new ArrayElementAssignmentTarget(array, key);
    }
}

From source file:com.mtbs3d.minecrift.control.GuiScreenNaviator.java

public void left() {
    onSlot = false;//w  w w  .ja  v  a 2  s  . co  m
    parsePoints();
    if (curPoint != null) {
        Pair<Integer, Integer> nextBest = null;
        for (Pair<Integer, Integer> point : points) {
            if (point.getLeft() < curPoint.getLeft()) {
                if (nextBest == null || dist(nextBest, curPoint, 1, AXIS_PREFERENCE) > dist(point, curPoint, 1,
                        AXIS_PREFERENCE))
                    nextBest = point;
            }
        }
        if (nextBest != null) {
            mc.currentScreen.mouseGuiDrag(curPoint.getLeft(), curPoint.getRight());
            curPoint = nextBest;
            mouseto();
        }
    }
}

From source file:com.mtbs3d.minecrift.control.GuiScreenNaviator.java

public void right() {
    onSlot = false;/*from   www .j  a  v a  2  s .co  m*/
    parsePoints();
    if (curPoint != null) {
        Pair<Integer, Integer> nextBest = null;
        for (Pair<Integer, Integer> point : points) {
            if (point.getLeft() > curPoint.getLeft()) {
                if (nextBest == null || dist(nextBest, curPoint, 1, AXIS_PREFERENCE) > dist(point, curPoint, 1,
                        AXIS_PREFERENCE))
                    nextBest = point;
            }
        }
        if (nextBest != null) {
            mc.currentScreen.mouseGuiDrag(curPoint.getLeft(), curPoint.getRight());
            curPoint = nextBest;
            mouseto();
        }
    }
}

From source file:edu.sabanciuniv.sentilab.sare.models.setcover.DocumentSetCover.java

/**
 * Adjusts the coverage of the set cover.
 * @param weightCoverage the desired minimum weight coverage.
 * @return the {@code this} object./*from   w w w.j  a v  a2 s .  c om*/
 */
public DocumentSetCover adjustCoverage(double weightCoverage) {
    // a quick way of checking if the weight coverage is valid or not. the setter will throw an exception if not.
    new SetCoverFactory().setWeightCoverage(weightCoverage);

    // apply the weight ratio.
    Pair<List<SetCoverDocument>, List<SetCoverDocument>> coverageSplit = this.splitByCoverage(weightCoverage);

    // mark covered and uncovered.
    for (SetCoverDocument document : coverageSplit.getLeft()) {
        document.setCovered(true);
    }

    for (SetCoverDocument document : coverageSplit.getRight()) {
        document.setCovered(false);
    }

    return this.setWeightCoverage(weightCoverage);
}