Example usage for org.apache.commons.logging Log error

List of usage examples for org.apache.commons.logging Log error

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In this page you can find the example usage for org.apache.commons.logging Log error.

Prototype

void error(Object message);

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Document

Logs a message with error log level.

Usage

From source file:org.opendatakit.aggregate.query.submission.QueryByUIFilterGroup.java

/**
 * Silently skip the submissions that are not retrievable due to malformations
 * of some kind.//from  w  w  w  . j  a  v a2 s .co  m
 * 
 */
public List<Submission> getResultSubmissions(CallingContext cc) throws ODKDatastoreException {

    List<Submission> retrievedSubmissions = new ArrayList<Submission>();

    // retrieve submissions
    QueryResult results = getQueryResult(cursor, fetchLimit);
    List<? extends CommonFieldsBase> submissionEntities = results.getResultList();

    // create a row for each submission
    for (int count = 0; count < submissionEntities.size(); count++) {
        CommonFieldsBase subEntity = submissionEntities.get(count);
        try {
            Submission sub = new Submission((TopLevelDynamicBase) subEntity, getForm(), cc);
            retrievedSubmissions.add(sub);
        } catch (ODKDatastoreException e) {
            Log logger = LogFactory.getLog(QueryByUIFilterGroup.class);
            e.printStackTrace();
            logger.error("Unable to reconstruct submission for " + subEntity.getSchemaName() + "."
                    + subEntity.getTableName() + " uri " + subEntity.getUri());

            if ((e instanceof ODKEntityNotFoundException) || (e instanceof ODKEnumeratedElementException)) {
                // see if we should throw an error or skip processing...
                Boolean skip = ServerPreferencesProperties.getSkipMalformedSubmissions(cc);
                if (skip) {
                    continue;
                } else {
                    throw e;
                }
            } else {
                throw e;
            }
        }
    }

    // advance cursor...
    cursor = results.getResumeCursor();
    return retrievedSubmissions;
}

From source file:org.opendatakit.aggregate.query.submission.QueryByUIFilterGroup.java

public void populateSubmissions(SubmissionUISummary summary, List<FormElementModel> filteredElements,
        ElementFormatter elemFormatter, List<FormElementNamespace> elementTypes, CallingContext cc)
        throws ODKDatastoreException {

    // retrieve submissions
    QueryResult results = getQueryResult(cursor, fetchLimit);
    FormElementModel fem = getForm().getTopLevelGroupElement();

    QueryResumePoint startCursor = results.getStartCursor();
    QueryResumePoint resumeCursor = results.getResumeCursor();
    QueryResumePoint backwardCursor = results.getBackwardCursor();

    // The SubmissionUISummary holds data as presented to the
    // UI layer.  Therefore, if we are paging backward, we need
    // to invert the sense of the query results.
    ///*from www  .  jav a  2s  .  co m*/
    // Determine whether we are going forward or backward...
    boolean isForwardCursor = true;
    if (startCursor != null) {
        isForwardCursor = startCursor.isForwardCursor();
    }

    if (isForwardCursor) {
        // everything matches across the UI and query layer...
        summary.setHasPriorResults(results.hasPriorResults());
        summary.setHasMoreResults(results.hasMoreResults());
        if (startCursor != null) {
            summary.setStartCursor(startCursor.transform());
        } else {
            summary.setStartCursor(null);
        }

        if (resumeCursor != null) {
            summary.setResumeCursor(resumeCursor.transform());
        } else {
            summary.setResumeCursor(null);
        }

        if (backwardCursor != null) {
            summary.setBackwardCursor(backwardCursor.transform());
        } else {
            summary.setBackwardCursor(null);
        }
    } else {
        // we are moving backward; the UI is inverted w.r.t. query.

        // SubmissionUISummary.hasPriorResults is query hasMoreResults
        // SubmissionUISummary.hasMoreResults is query hasPriorResults
        summary.setHasPriorResults(results.hasMoreResults());
        summary.setHasMoreResults(results.hasPriorResults());

        // SubmissionUISummary.startCursor is unchanged
        if (startCursor != null) {
            summary.setStartCursor(startCursor.transform());
        } else {
            summary.setStartCursor(null);
        }

        // SubmissionUISummary.resumeCursor is query backwardCursor
        if (backwardCursor != null) {
            summary.setResumeCursor(backwardCursor.transform());
        } else {
            summary.setResumeCursor(null);
        }

        // SubmissionUISummary.backwardCursor is query resumeCursor
        if (resumeCursor != null) {
            summary.setBackwardCursor(resumeCursor.transform());
        } else {
            summary.setBackwardCursor(null);
        }

    }

    List<SubmissionUI> submissionList = new ArrayList<SubmissionUI>();

    // create a row for each submission
    for (CommonFieldsBase subEntity : results.getResultList()) {
        try {
            Submission sub = new Submission((TopLevelDynamicBase) subEntity, getForm(), cc);
            Row row = sub.getFormattedValuesAsRow(elementTypes, filteredElements, elemFormatter, false, cc);

            SubmissionKey subKey = sub.constructSubmissionKey(fem);
            submissionList.add(new SubmissionUI(row.getFormattedValues(), subKey.toString()));
        } catch (ODKDatastoreException e) {
            Log logger = LogFactory.getLog(QueryByUIFilterGroup.class);
            e.printStackTrace();
            logger.error("Unable to reconstruct submission for " + subEntity.getSchemaName() + "."
                    + subEntity.getTableName() + " uri " + subEntity.getUri());

            if ((e instanceof ODKEntityNotFoundException) || (e instanceof ODKEnumeratedElementException)) {
                // see if we should throw an error or skip processing...
                Boolean skip = ServerPreferencesProperties.getSkipMalformedSubmissions(cc);
                if (skip) {
                    continue;
                } else {
                    throw e;
                }
            } else {
                throw e;
            }
        }
    }
    if (!isForwardCursor) {
        // query has the results in the reverse order.
        // invert them to get them properly ordered.
        Collections.reverse(submissionList);
    }
    summary.getSubmissions().addAll(submissionList);
}

From source file:org.opendatakit.aggregate.submission.Submission.java

public static final Submission fetchSubmission(List<SubmissionKeyPart> parts, CallingContext cc)
        throws ODKFormNotFoundException, ODKDatastoreException {
    if (parts == null || parts.size() == 0) {
        throw new IllegalArgumentException("submission key is empty");
    }// w  ww.  j  a  va2  s  .  c o m
    IForm form = FormFactory.retrieveFormByFormId(parts.get(0).getElementName(), cc);
    if (!form.hasValidFormDefinition()) {
        throw new IllegalArgumentException("Form definition is ill-formed"); // ill-formed
                                                                             // definition
    }

    if (parts.size() < 2) {
        throw new IllegalArgumentException("submission key does not have a top level group");
    }
    SubmissionKeyPart tlg = parts.get(1);
    if (!form.getTopLevelGroupElement().getElementName().equals(tlg.getElementName())) {
        throw new IllegalArgumentException("top level group name: " + tlg.getElementName()
                + " is not as expected: " + form.getTopLevelGroupElement().getElementName());
    }
    if (tlg.getAuri() == null) {
        throw new IllegalArgumentException("submission key does not have top level auri");
    }

    Datastore ds = cc.getDatastore();
    User user = cc.getCurrentUser();
    TopLevelDynamicBase tle = (TopLevelDynamicBase) ds.getEntity(
            form.getTopLevelGroupElement().getFormDataModel().getBackingObjectPrototype(), tlg.getAuri(), user);

    try {
        return new Submission(tle, form, cc);
    } catch (ODKDatastoreException e) {
        Log logger = LogFactory.getLog(Submission.class);
        e.printStackTrace();
        logger.error("Unable to reconstruct submission for " + tle.getSchemaName() + "." + tle.getTableName()
                + " uri " + tle.getUri());

        if ((e instanceof ODKEntityNotFoundException) || (e instanceof ODKEnumeratedElementException)) {
            // see if we should throw an error or skip processing...
            Boolean skip = ServerPreferencesProperties.getSkipMalformedSubmissions(cc);
            if (skip) {
                return null;
            } else {
                throw e;
            }
        } else {
            throw e;
        }
    }

}

From source file:org.opendatakit.aggregate.task.WorksheetCreatorWorkerImpl.java

public final void worksheetCreator() {

    Log logger = LogFactory.getLog(WorksheetCreatorWorkerImpl.class);
    logger.info("Beginning Worksheet Creator: " + miscTasksKey.toString() + " form " + form.getFormId());

    MiscTasks t;/*from w w  w. j  a v a  2s.  co  m*/
    try {
        t = new MiscTasks(miscTasksKey, cc);
    } catch (Exception e) {
        logger.error("worksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                + " MiscTasks retrieval exception: " + e.toString());
        return;
    }
    // gain lock on the formId itself...
    // the locked resource should be the formId, but for testing
    // it is useful to have the external services collide using
    // formId.  Prefix with MT: to indicate that it is a miscellaneousTask
    // lock.
    Datastore ds = cc.getDatastore();
    User user = cc.getCurrentUser();
    String lockedResourceName = t.getMiscTaskLockName();
    TaskLock formIdTaskLock = ds.createTaskLock(user);

    boolean locked = false;
    try {
        if (formIdTaskLock.obtainLock(pFormIdLockId, lockedResourceName, TaskLockType.WORKSHEET_CREATION)) {
            locked = true;
        }
        formIdTaskLock = null;
    } catch (ODKTaskLockException e1) {
        e1.printStackTrace(); // Occasionally expected...
    }

    if (!locked) {
        return;
    }

    try {
        if (t.getRequestDate().before(form.getCreationDate())) {
            // form is newer, so the task must not refer to this form definition...
            doMarkAsComplete(t);
        } else {
            // worksheet creation request should have been created after the form...
            doWorksheetCreator(logger);
        }
    } catch (Exception e2) {
        // some other unexpected exception...
        logger.error("worksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                + " Unexpected exception from work body: " + e2.toString());
        e2.printStackTrace();
    } finally {
        formIdTaskLock = ds.createTaskLock(user);
        try {
            for (int i = 0; i < 10; i++) {
                if (formIdTaskLock.releaseLock(pFormIdLockId, lockedResourceName,
                        TaskLockType.WORKSHEET_CREATION))
                    break;
                try {
                    Thread.sleep(1000);
                } catch (InterruptedException e) {
                    // just move on, this retry mechanism
                    // is to make things nice
                }
            }
        } catch (ODKTaskLockException e) {
            e.printStackTrace();
        }
    }
}

From source file:org.opendatakit.aggregate.task.WorksheetCreatorWorkerImpl.java

public final void doWorksheetCreator(Log logger) {
    try {//www  . j a  v  a2s.  c o  m
        // get spreadsheet
        GoogleSpreadsheet spreadsheet = getGoogleSpreadsheetWithName();

        // verify form has a spreadsheet element
        if (spreadsheet == null) {
            throw new ODKExternalServiceException("unable to find spreadsheet");
        }

        // generate worksheets
        try {
            spreadsheet.generateWorksheets(cc);
            logger.info("doWorksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                    + " Successful worksheet creation!");
        } catch (AuthenticationException e) {
            logger.error("doWorksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                    + " Exception: " + e.toString());
            throw new ODKExternalServiceCredentialsException(e);
        } catch (ODKExternalServiceException e) {
            logger.error("doWorksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                    + " Exception: " + e.toString());
            throw e;
        } catch (Exception e) {
            logger.error("doWorksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                    + " Exception: " + e.toString());
            throw new ODKExternalServiceException(e);
        }

        // the above may have taken a while -- re-fetch the data to see if it has changed...
        MiscTasks r = new MiscTasks(miscTasksKey, cc);
        if (attemptCount.equals(r.getAttemptCount())) {
            // still the same attempt...
            // if we need to upload submissions, start a task to do so
            UploadSubmissions us = (UploadSubmissions) cc.getBean(BeanDefs.UPLOAD_TASK_BEAN);
            if (!esType.equals(ExternalServicePublicationOption.STREAM_ONLY)) {
                us.createFormUploadTask(spreadsheet.getFormServiceCursor(), true, cc);
            }

            doMarkAsComplete(r);
        }
    } catch (Exception e) {
        logger.error("doWorksheetCreator: " + miscTasksKey.toString() + " form " + form.getFormId()
                + " Initiating failure recovery: " + e.toString());
        failureRecovery(e);
    }
}

From source file:org.opendatakit.aggregate.task.WorksheetCreatorWorkerImpl.java

private void failureRecovery(Exception e) {
    // three exceptions possible:
    // ODKFormNotFoundException, ODKDatastoreException, ODKExternalServiceException, Exception
    e.printStackTrace();/*from   ww w .  j  a v a  2  s  .c o m*/
    MiscTasks r;
    try {
        r = new MiscTasks(miscTasksKey, cc);
        if (attemptCount.equals(r.getAttemptCount())) {
            r.setStatus(FormActionStatus.FAILED);
            r.persist(cc);
        }
    } catch (Exception ex) {
        Log logger = LogFactory.getLog(WorksheetCreatorWorkerImpl.class);
        logger.error("failureRecovery: " + miscTasksKey.toString() + " form " + form.getFormId()
                + " Exception during failure recovery: " + ex.toString());
        // something is hosed -- don't attempt to continue.
        // TODO: watchdog: find this once lastRetryDate is way late?
    }
}

From source file:org.opendatakit.api.odktables.FileManifestService.java

/**
 *
 * @param httpHeaders//from   ww w  . j  av  a2  s.c  o  m
 * @param odkClientVersion
 * @return {@link OdkTablesFileManifest} of all the files meeting the filter criteria.
 * @throws ODKOverQuotaException
 * @throws ODKEntityNotFoundException
 * @throws ODKTaskLockException
 * @throws ODKDatastoreException
 * @throws PermissionDeniedException
 */
@GET
@ApiOperation(value = "Returns a list of application-level files.", response = OdkTablesFileManifest.class)
@Path("{odkClientVersion}")
@Produces({ MediaType.APPLICATION_JSON, ApiConstants.MEDIA_TEXT_XML_UTF8,
        ApiConstants.MEDIA_APPLICATION_XML_UTF8 })
public Response /* OdkTablesFileManifest */ getAppLevelFileManifest(@Context HttpHeaders httpHeaders,
        @PathParam("odkClientVersion") String odkClientVersion) throws ODKEntityNotFoundException,
        ODKOverQuotaException, PermissionDeniedException, ODKDatastoreException, ODKTaskLockException {

    FileManifestManager manifestManager = new FileManifestManager(appId, odkClientVersion, cc);
    OdkTablesFileManifest manifest = null;
    Log log = LogFactory.getLog(FileManifestService.class);

    // retrieve the incoming if-none-match eTag...
    List<String> eTags = httpHeaders.getRequestHeader(HttpHeaders.IF_NONE_MATCH);
    String eTag = (eTags == null || eTags.isEmpty()) ? null : eTags.get(0);
    DbManifestETagEntity eTagEntity = null;
    try {
        try {
            eTagEntity = DbManifestETags.getTableIdEntry(DbManifestETags.APP_LEVEL, cc);
        } catch (ODKEntityNotFoundException e) {
            // ignore...
        }
        if (eTag != null && eTagEntity != null && eTag.equals(eTagEntity.getManifestETag())) {
            log.info("The etag about to be returned for Not Modified is " + eTag);
            return Response.status(Status.NOT_MODIFIED).header(HttpHeaders.ETAG, eTag)
                    .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                    .header("Access-Control-Allow-Origin", "*")
                    .header("Access-Control-Allow-Credentials", "true").build();
        }
        // we want just the app-level files.
        manifest = manifestManager.getManifestForAppLevelFiles();

    } catch (ODKDatastoreException e) {
        log.error("Datastore exception in getting the file manifest");
        e.printStackTrace();
    }
    if (manifest == null) {
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity("Unable to retrieve manifest.")
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true")
                .build();
    } else {
        String newETag = Integer.toHexString(manifest.hashCode());
        // create a new eTagEntity if there isn't one already...
        if (eTagEntity == null) {
            eTagEntity = DbManifestETags.createNewEntity(DbManifestETags.APP_LEVEL, cc);
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        } else if (!newETag.equals(eTagEntity.getManifestETag())) {
            log.error("App-level Manifest ETag does not match computed value!");
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        }
        // and whatever the eTag is in that entity is the eTag we should return...
        eTag = eTagEntity.getManifestETag();
        UriBuilder uriBuilder = info.getBaseUriBuilder();
        uriBuilder.path(OdkTables.class);
        //UriBuilder uriBuilder = UriBuilder.fromResource(OdkTables.class);
        uriBuilder.path(OdkTables.class, "getFilesService");
        // now supply the downloadUrl...
        for (OdkTablesFileManifestEntry entry : manifest.getFiles()) {
            URI self = uriBuilder.clone().path(FileService.class, "getFile")
                    .build(ArrayUtils.toArray(appId, odkClientVersion, entry.filename), false);
            try {
                entry.downloadUrl = self.toURL().toExternalForm();
            } catch (MalformedURLException e) {
                e.printStackTrace();
                throw new IllegalArgumentException("Unable to convert to URL");
            }
        }

        log.info("The etag about to be returned for OK is " + eTag);
        return Response.ok(manifest).header(HttpHeaders.ETAG, eTag)
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true")
                .build();
    }
}

From source file:org.opendatakit.api.odktables.FileManifestService.java

/**
 *
 * @param httpHeaders/*from   ww  w.  jav  a  2 s. c  o  m*/
 * @param odkClientVersion
 * @param tableId
 * @return {@link OdkTablesFileManifest} of all the files meeting the filter criteria.
 * @throws ODKOverQuotaException
 * @throws ODKEntityNotFoundException
 * @throws ODKTaskLockException
 * @throws ODKDatastoreException
 * @throws PermissionDeniedException
 */
@GET
@ApiOperation(value = "Returns a the list of files which make up a form definition.", response = OdkTablesFileManifest.class)
@Path("{odkClientVersion}/{tableId}")
@Produces({ MediaType.APPLICATION_JSON, ApiConstants.MEDIA_TEXT_XML_UTF8,
        ApiConstants.MEDIA_APPLICATION_XML_UTF8 })
public Response /* OdkTablesFileManifest */ getTableIdFileManifest(@Context HttpHeaders httpHeaders,
        @PathParam("odkClientVersion") String odkClientVersion, @PathParam("tableId") String tableId)
        throws ODKEntityNotFoundException, ODKOverQuotaException, PermissionDeniedException,
        ODKDatastoreException, ODKTaskLockException {

    FileManifestManager manifestManager = new FileManifestManager(appId, odkClientVersion, cc);
    OdkTablesFileManifest manifest = null;

    // retrieve the incoming if-none-match eTag...
    List<String> eTags = httpHeaders.getRequestHeader(HttpHeaders.IF_NONE_MATCH);
    String eTag = (eTags == null || eTags.isEmpty()) ? null : eTags.get(0);
    DbManifestETagEntity eTagEntity = null;
    try {
        try {
            eTagEntity = DbManifestETags.getTableIdEntry(tableId, cc);
        } catch (ODKEntityNotFoundException e) {
            // ignore...
        }
        if (eTag != null && eTagEntity != null && eTag.equals(eTagEntity.getManifestETag())) {
            return Response.status(Status.NOT_MODIFIED).header(HttpHeaders.ETAG, eTag)
                    .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                    .header("Access-Control-Allow-Origin", "*")
                    .header("Access-Control-Allow-Credentials", "true").build();
        }
        // we want just the files for the table.
        manifest = manifestManager.getManifestForTable(tableId);
    } catch (ODKDatastoreException e) {
        Log log = LogFactory.getLog(FileManifestService.class);
        log.error("Datastore exception in getting the file manifest");
        e.printStackTrace();
    }
    if (manifest == null) {
        return Response.status(Status.INTERNAL_SERVER_ERROR).entity("Unable to retrieve manifest.")
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true")
                .build();
    } else {
        String newETag = Integer.toHexString(manifest.hashCode());
        // create a new eTagEntity if there isn't one already...
        if (eTagEntity == null) {
            eTagEntity = DbManifestETags.createNewEntity(tableId, cc);
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        } else if (!newETag.equals(eTagEntity.getManifestETag())) {
            Log log = LogFactory.getLog(FileManifestService.class);
            log.error("Table-level (" + tableId + ") Manifest ETag does not match computed value!");
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        }
        // and whatever the eTag is in that entity is the eTag we should return...
        eTag = eTagEntity.getManifestETag();
        fixDownloadUrls(info, appId, odkClientVersion, manifest);

        return Response.ok(manifest).header(HttpHeaders.ETAG, eTag)
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true")
                .build();
    }
}

From source file:org.opendatakit.api.odktables.InstanceFileService.java

@GET
@Path("manifest")
@Produces({ MediaType.APPLICATION_JSON, ApiConstants.MEDIA_TEXT_XML_UTF8,
        ApiConstants.MEDIA_APPLICATION_XML_UTF8 })
public Response getManifest(@Context HttpHeaders httpHeaders,
        @QueryParam(PARAM_AS_ATTACHMENT) String asAttachment)
        throws IOException, ODKTaskLockException, PermissionDeniedException {
    UriBuilder ub = info.getBaseUriBuilder();
    ub.path(OdkTables.class);
    ub.path(OdkTables.class, "getTablesService");
    UriBuilder full = ub.clone().path(TableService.class, "getRealizedTable")
            .path(RealizedTableService.class, "getInstanceFiles")
            .path(InstanceFileService.class, "getManifest");
    URI self = full.build(appId, tableId, schemaETag, rowId);
    String manifestUrl = self.toURL().toExternalForm();

    // retrieve the incoming if-none-match eTag...
    List<String> eTags = httpHeaders.getRequestHeader(HttpHeaders.IF_NONE_MATCH);
    String eTag = (eTags == null || eTags.isEmpty()) ? null : eTags.get(0);
    DbTableInstanceManifestETagEntity eTagEntity = null;
    try {/*  www . j  a  v  a 2s.  co m*/
        try {
            eTagEntity = DbTableInstanceManifestETags.getRowIdEntry(tableId, rowId, cc);
        } catch (ODKEntityNotFoundException e) {
            // ignore...
        }

        if (eTag != null && eTagEntity != null && eTag.equals(eTagEntity.getManifestETag())) {
            return Response.status(Status.NOT_MODIFIED).header(HttpHeaders.ETAG, eTag)
                    .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                    .header("Access-Control-Allow-Origin", "*")
                    .header("Access-Control-Allow-Credentials", "true").build();
        }

        InstanceFileManager fm = new InstanceFileManager(appId, cc);

        // get the manifest entries
        final TreeMap<String, FileContentInfo> contents = new TreeMap<String, FileContentInfo>();

        fm.getInstanceAttachments(tableId, rowId, new FileContentHandler() {

            @Override
            public void processFileContent(FileContentInfo content, FetchBlobHandler fetcher) {
                contents.put(content.partialPath, content);

            }
        }, userPermissions);

        // transform to the class used in the REST api
        ArrayList<OdkTablesFileManifestEntry> manifestEntries = new ArrayList<OdkTablesFileManifestEntry>();

        for (Map.Entry<String, FileContentInfo> sfci : contents.entrySet()) {
            // these are in sorted order
            OdkTablesFileManifestEntry entry = new OdkTablesFileManifestEntry();
            entry.filename = sfci.getValue().partialPath;
            entry.contentLength = sfci.getValue().contentLength;
            entry.contentType = sfci.getValue().contentType;
            entry.md5hash = sfci.getValue().contentHash;

            URI getFile = ub.clone().path(TableService.class, "getRealizedTable")
                    .path(RealizedTableService.class, "getInstanceFiles")
                    .path(InstanceFileService.class, "getFile")
                    .build(appId, tableId, schemaETag, rowId, entry.filename);
            String locationUrl = getFile.toURL().toExternalForm();
            entry.downloadUrl = locationUrl;

            manifestEntries.add(entry);
        }
        OdkTablesFileManifest manifest = new OdkTablesFileManifest(manifestEntries);

        String newETag = Integer.toHexString(manifest.hashCode());
        // create a new eTagEntity if there isn't one already...
        if (eTagEntity == null) {
            eTagEntity = DbTableInstanceManifestETags.createNewEntity(tableId, rowId, cc);
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        } else if (!newETag.equals(eTagEntity.getManifestETag())) {
            Log log = LogFactory.getLog(FileManifestService.class);
            log.error("TableInstance (" + tableId + "," + rowId
                    + ") Manifest ETag does not match computed value!");
            eTagEntity.setManifestETag(newETag);
            eTagEntity.put(cc);
        }

        // and whatever the eTag is in that entity is the eTag we should return...
        eTag = eTagEntity.getManifestETag();

        ResponseBuilder rBuild = Response.ok(manifest).header(HttpHeaders.ETAG, eTag)
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true");
        if (asAttachment != null && !"".equals(asAttachment)) {
            // Set the filename we're downloading to the disk.
            rBuild.header(WebConsts.CONTENT_DISPOSITION,
                    "attachment; " + "filename=\"" + "manifest.json" + "\"");
        }
        return rBuild.build();
    } catch (ODKDatastoreException e) {
        e.printStackTrace();
        return Response.status(Status.INTERNAL_SERVER_ERROR)
                .entity("Unable to retrieve manifest of attachments for: " + manifestUrl)
                .header(ApiConstants.OPEN_DATA_KIT_VERSION_HEADER, ApiConstants.OPEN_DATA_KIT_VERSION)
                .header("Access-Control-Allow-Origin", "*").header("Access-Control-Allow-Credentials", "true")
                .build();
    }
}

From source file:org.opendatakit.common.persistence.engine.gae.QueryImpl.java

final static synchronized void updateCostLoggingThreshold(DatastoreImpl datastore) {
    Log logger = LogFactory.getLog(QueryImpl.class);

    long currentTime = System.currentTimeMillis();
    if (milliLastCheck + ACTIVE_COST_LOGGING_CHECK_INTERVAL < currentTime) {

        milliLastCheck = currentTime;// update early in case an exception is
                                     // thrown...
        try {//from   ww  w. j a v a  2  s  .c o m
            com.google.appengine.api.datastore.Query query = new Query("_COST_LOGGING_");
            PreparedQuery pq = datastore.getDatastoreService().prepare(query);
            logger.debug("costLogging fetch.");
            List<com.google.appengine.api.datastore.Entity> eList = pq
                    .asList(FetchOptions.Builder.withDefaults());
            datastore.recordQueryUsage("_COST_LOGGING_", eList.size());
            if (eList.isEmpty()) {
                costLoggingMinimumMegacyclesThreshold = 10 * 1200; // 10 seconds...
                logger.warn("writing 10-second cost logging threshold record");
                com.google.appengine.api.datastore.Entity e = new com.google.appengine.api.datastore.Entity(
                        "_COST_LOGGING_", "T" + WebUtils.iso8601Date(new Date()));
                e.setProperty("COST_LOGGING_MEGACYCLE_THRESHOLD", 10 * 1200); // 10
                                                                              // seconds...
                e.setProperty("LAST_UPDATE_DATE", new Date());
                datastore.getDatastoreService().put(e);
            } else {
                Long newValue = null;
                for (com.google.appengine.api.datastore.Entity e : eList) {
                    Object o = e.getProperty("COST_LOGGING_MEGACYCLE_THRESHOLD");
                    if (o != null) {
                        if (o instanceof Long) {
                            Long l = (Long) o;
                            if (newValue == null || newValue.compareTo(l) > 0) {
                                newValue = l;
                            } else {
                                logger.warn("deleting superceded logging threshold record");
                                datastore.getDatastoreService().delete(e.getKey());
                            }
                        } else if (o instanceof Integer) {
                            Integer i = (Integer) o;
                            Long l = Long.valueOf(i);
                            if (newValue == null || newValue.compareTo(l) > 0) {
                                newValue = l;
                            } else {
                                logger.warn("deleting superceded logging threshold record");
                                datastore.getDatastoreService().delete(e.getKey());
                            }
                        } else if (o instanceof String) {
                            String s = (String) o;
                            try {
                                Long l = Long.parseLong(s);
                                if (newValue == null || newValue.compareTo(l) > 0) {
                                    newValue = l;
                                } else {
                                    logger.warn("deleting superceded logging threshold record");
                                    datastore.getDatastoreService().delete(e.getKey());
                                }
                            } catch (NumberFormatException ex) {
                                logger.warn("deleting superceded logging threshold record");
                                datastore.getDatastoreService().delete(e.getKey());
                            }
                        } else {
                            logger.warn("deleting superceded logging threshold record");
                            datastore.getDatastoreService().delete(e.getKey());
                        }
                    }
                }
                if (newValue == null) {
                    logger.warn("resetting cost logging to 10 second (12000 megacycle) threshold");
                    costLoggingMinimumMegacyclesThreshold = 10 * 1200; // 10 seconds...
                } else if (costLoggingMinimumMegacyclesThreshold != newValue.longValue()) {
                    logger.warn("changing cost logging to " + newValue + " megacycle threshold");
                    costLoggingMinimumMegacyclesThreshold = newValue;
                }
            }
        } catch (Exception e) {
            e.printStackTrace();
            logger.error("exception while updating cost logging threshold: " + e.getMessage());
        }
    }
}