List of usage examples for org.apache.commons.math3.stat.descriptive DescriptiveStatistics getPopulationVariance
public double getPopulationVariance()
From source file:com.github.jessemull.microflexbiginteger.stat.PopulationVarianceWeightsTest.java
/** * Tests well calculation using indices. *//*from w w w. j a v a 2 s . c om*/ @Test public void testWellIndices() { for (Plate plate : arrayIndices) { for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index] = bi.doubleValue() * weightsIndices[index]; index++; } int begin = random.nextInt(well.size() - 4); int end = begin + random.nextInt(3) + 3; DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal returned = variance.well(well, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); BigDecimal result = new BigDecimal(resultDouble, mc); BigDecimal[] corrected = correctRoundingErrors(returned, result); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statbigdecimal.PopulationVarianceBigDecimalWeightsTest.java
/** * Tests well calculation using indices. */// ww w.j a va 2s.c om @Test public void testWellIndices() { for (PlateBigDecimal plate : arrayIndices) { for (WellBigDecimal well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index] = bd.doubleValue() * weightsIndices[index]; index++; } int begin = random.nextInt(well.size() - 4); int end = begin + random.nextInt(3) + 3; DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal returned = variance.well(well, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); BigDecimal result = new BigDecimal(resultDouble, mc); BigDecimal[] corrected = correctRoundingErrors(returned, result); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexbigdecimal.stat.PopulationVarianceWeightsTest.java
/** * Tests well calculation using indices. *///from w ww . ja v a2 s . c o m @Test public void testWellIndices() { for (Plate plate : arrayIndices) { for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index] = bd.doubleValue() * weightsIndices[index]; index++; } int begin = random.nextInt(well.size() - 4); int end = begin + random.nextInt(3) + 3; DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal returned = variance.well(well, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); BigDecimal result = new BigDecimal(resultDouble, mc); BigDecimal[] corrected = correctRoundingErrors(returned, result); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statbiginteger.PopulationVarianceBigIntegerWeightsTest.java
/** * Tests the plate statistics method using the values between the indices. */// w w w . j a v a2 s. c o m @Test public void testPlateIndices() { for (PlateBigInteger plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<WellBigInteger, BigDecimal> resultMap = new TreeMap<WellBigInteger, BigDecimal>(); Map<WellBigInteger, BigDecimal> returnedMap = variance.plate(plate, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (WellBigInteger well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index] = bi.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (WellBigInteger well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statbiginteger.PopulationVarianceBigIntegerWeightsTest.java
/** * Tests set calculation using indices./*from ww w . ja v a 2 s . c o m*/ */ @Test public void testSetIndices() { for (PlateBigInteger plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<WellBigInteger, BigDecimal> resultMap = new TreeMap<WellBigInteger, BigDecimal>(); Map<WellBigInteger, BigDecimal> returnedMap = variance.set(plate.dataSet(), ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (WellBigInteger well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index] = bi.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (WellBigInteger well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexbiginteger.stat.PopulationVarianceWeightsTest.java
/** * Tests the plate statistics method using the values between the indices. *//* w w w . j ava2 s . c o m*/ @Test public void testPlateIndices() { for (Plate plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<Well, BigDecimal> resultMap = new TreeMap<Well, BigDecimal>(); Map<Well, BigDecimal> returnedMap = variance.plate(plate, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index] = bi.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (Well well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexbiginteger.stat.PopulationVarianceWeightsTest.java
/** * Tests set calculation using indices./* w w w . j a va 2 s. c o m*/ */ @Test public void testSetIndices() { for (Plate plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<Well, BigDecimal> resultMap = new TreeMap<Well, BigDecimal>(); Map<Well, BigDecimal> returnedMap = variance.set(plate.dataSet(), ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index] = bi.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (Well well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statbigdecimal.PopulationVarianceBigDecimalWeightsTest.java
/** * Tests the plate statistics method using the values between the indices. *//*ww w . j av a 2s. c om*/ @Test public void testPlateIndices() { for (PlateBigDecimal plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<WellBigDecimal, BigDecimal> resultMap = new TreeMap<WellBigDecimal, BigDecimal>(); Map<WellBigDecimal, BigDecimal> returnedMap = variance.plate(plate, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (WellBigDecimal well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index] = bd.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (WellBigDecimal well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statbigdecimal.PopulationVarianceBigDecimalWeightsTest.java
/** * Tests set calculation using indices.// www . j a va 2 s . co m */ @Test public void testSetIndices() { for (PlateBigDecimal plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<WellBigDecimal, BigDecimal> resultMap = new TreeMap<WellBigDecimal, BigDecimal>(); Map<WellBigDecimal, BigDecimal> returnedMap = variance.set(plate.dataSet(), ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (WellBigDecimal well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index] = bd.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (WellBigDecimal well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexbigdecimal.stat.PopulationVarianceWeightsTest.java
/** * Tests the plate statistics method using the values between the indices. *//*from w ww.ja va2s . c o m*/ @Test public void testPlateIndices() { for (Plate plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; Map<Well, BigDecimal> resultMap = new TreeMap<Well, BigDecimal>(); Map<Well, BigDecimal> returnedMap = variance.plate(plate, ArrayUtils.subarray(weightsIndices, begin, end), begin, end - begin, mc); for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index] = bd.doubleValue() * weightsIndices[index]; index++; } DescriptiveStatistics stat = new DescriptiveStatistics(ArrayUtils.subarray(input, begin, end)); double resultDouble = stat.getPopulationVariance(); BigDecimal result = new BigDecimal(resultDouble, mc); resultMap.put(well, result); } for (Well well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }