List of usage examples for org.apache.commons.math3.stat.descriptive DescriptiveStatistics getVariance
public double getVariance()
From source file:com.github.jessemull.microflex.stat.statinteger.SampleVarianceIntegerWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices of * the collection./*from w w w .j a va2s.c o m*/ */ @Test public void testAggregatedSetCollectionIndices() { int begin = random.nextInt(arrayIndices[0].first().size() - 4); int end = begin + random.nextInt(3) + 3; List<WellSetInteger> collection = new ArrayList<WellSetInteger>(); for (PlateInteger plate : arrayIndices) { collection.add(plate.dataSet()); } Map<WellSetInteger, Double> aggregatedReturnedMap = variance.setsAggregated(collection, weightsIndices, begin, end - begin); Map<WellSetInteger, Double> aggregatedResultMap = new TreeMap<WellSetInteger, Double>(); for (WellSetInteger set : collection) { List<BigDecimal> resultList = new ArrayList<BigDecimal>(); for (WellInteger well : set) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double aggregatedResult = statAggregated.getVariance(); aggregatedResultMap.put(set, aggregatedResult); } for (WellSetInteger set : collection) { double result = Precision.round(aggregatedResultMap.get(set), precision); double returned = Precision.round(aggregatedReturnedMap.get(set), precision); assertTrue(result == returned); } }
From source file:com.github.jessemull.microflex.stat.statinteger.SampleVarianceIntegerWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices of * the array./* www . j a va 2 s.c om*/ */ @Test public void testAggregatedSetArrayIndices() { int begin = random.nextInt(arrayIndices[0].first().size() - 4); int end = begin + random.nextInt(3) + 3; WellSetInteger[] setArrayIndices = new WellSetInteger[arrayIndices.length]; for (int i = 0; i < setArrayIndices.length; i++) { setArrayIndices[i] = arrayIndices[i].dataSet(); } Map<WellSetInteger, Double> aggregatedReturnedMap = variance.setsAggregated(setArrayIndices, weightsIndices, begin, end - begin); Map<WellSetInteger, Double> aggregatedResultMap = new TreeMap<WellSetInteger, Double>(); for (WellSetInteger set : setArrayIndices) { List<BigDecimal> resultList = new ArrayList<BigDecimal>(); for (WellInteger well : set) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double aggregatedResult = statAggregated.getVariance(); aggregatedResultMap.put(set, aggregatedResult); } for (WellSetInteger plate : setArrayIndices) { double result = Precision.round(aggregatedResultMap.get(plate), precision); double returned = Precision.round(aggregatedReturnedMap.get(plate), precision); assertTrue(result == returned); } }
From source file:com.github.jessemull.microflexbigdecimal.stat.SampleVarianceTest.java
/** * Tests set calculation using indices./*from w w w . java 2 s. c o m*/ */ @Test public void testSetIndices() { for (Plate plate : arrayIndices) { int size = arrayIndices[0].first().size(); int begin = random.nextInt(size - 5); int end = (begin + 4) + random.nextInt(size - (begin + 4) + 1); Map<Well, BigDecimal> resultMap = new TreeMap<Well, BigDecimal>(); Map<Well, BigDecimal> returnedMap = variance.set(plate.dataSet(), begin, end - begin, mc); for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigDecimal bd : well) { input[index++] = bd.doubleValue(); } double[] inputArray = ArrayUtils.subarray(input, begin, end); DescriptiveStatistics stat = new DescriptiveStatistics(inputArray); double resultDouble = stat.getVariance(); BigDecimal result = new BigDecimal(resultDouble); resultMap.put(well, result); } for (Well well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexbiginteger.stat.SampleVarianceTest.java
/** * Tests the plate statistics method using the values between the indices. *///from w w w . ja va2s . co m @Test public void testPlateIndices() { for (Plate plate : arrayIndices) { int size = arrayIndices[0].first().size(); int begin = random.nextInt(size - 5); int end = (begin + 4) + random.nextInt(size - (begin + 4) + 1); Map<Well, BigDecimal> resultMap = new TreeMap<Well, BigDecimal>(); Map<Well, BigDecimal> returnedMap = variance.plate(plate, begin, end - begin, mc); for (Well well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index++] = bi.doubleValue(); } double[] inputArray = ArrayUtils.subarray(input, begin, end); DescriptiveStatistics stat = new DescriptiveStatistics(inputArray); double resultDouble = stat.getVariance(); BigDecimal result = new BigDecimal(resultDouble); resultMap.put(well, result); } for (Well well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflexdouble.stat.SampleVarianceWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices. *//*www . j a v a2s. co m*/ @Test public void testAggregatedPlateIndices() { for (Plate plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; List<BigDecimal> resultList = new ArrayList<BigDecimal>(); double aggregatedReturned = Precision .round(variance.platesAggregated(plate, weightsIndices, begin, end - begin), precision); for (Well well : plate) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double resultAggregated = Precision.round(statAggregated.getVariance(), precision); assertTrue(resultAggregated == aggregatedReturned); } }
From source file:com.github.jessemull.microflexdouble.stat.SampleVarianceWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices. *//*www. j a v a 2s . c om*/ @Test public void testAggregatedSetIndices() { for (Plate plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; List<BigDecimal> resultList = new ArrayList<BigDecimal>(); double aggregatedReturned = Precision .round(variance.setsAggregated(plate.dataSet(), weightsIndices, begin, end - begin), precision); for (Well well : plate) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double resultAggregated = Precision.round(statAggregated.getVariance(), precision); assertTrue(resultAggregated == aggregatedReturned); } }
From source file:com.github.jessemull.microflexdouble.stat.SampleVarianceWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices of * the collection.//from w w w .j a v a2 s.c o m */ @Test public void testAggregatedSetCollectionIndices() { int begin = random.nextInt(arrayIndices[0].first().size() - 4); int end = begin + random.nextInt(3) + 3; List<WellSet> collection = new ArrayList<WellSet>(); for (Plate plate : arrayIndices) { collection.add(plate.dataSet()); } Map<WellSet, Double> aggregatedReturnedMap = variance.setsAggregated(collection, weightsIndices, begin, end - begin); Map<WellSet, Double> aggregatedResultMap = new TreeMap<WellSet, Double>(); for (WellSet set : collection) { List<BigDecimal> resultList = new ArrayList<BigDecimal>(); for (Well well : set) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double aggregatedResult = statAggregated.getVariance(); aggregatedResultMap.put(set, aggregatedResult); } for (WellSet set : collection) { double result = Precision.round(aggregatedResultMap.get(set), precision); double returned = Precision.round(aggregatedReturnedMap.get(set), precision); assertTrue(result == returned); } }
From source file:com.github.jessemull.microflexdouble.stat.SampleVarianceWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices of * the array./* w w w . jav a2 s. c o m*/ */ @Test public void testAggregatedSetArrayIndices() { int begin = random.nextInt(arrayIndices[0].first().size() - 4); int end = begin + random.nextInt(3) + 3; WellSet[] setArrayIndices = new WellSet[arrayIndices.length]; for (int i = 0; i < setArrayIndices.length; i++) { setArrayIndices[i] = arrayIndices[i].dataSet(); } Map<WellSet, Double> aggregatedReturnedMap = variance.setsAggregated(setArrayIndices, weightsIndices, begin, end - begin); Map<WellSet, Double> aggregatedResultMap = new TreeMap<WellSet, Double>(); for (WellSet set : setArrayIndices) { List<BigDecimal> resultList = new ArrayList<BigDecimal>(); for (Well well : set) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double aggregatedResult = statAggregated.getVariance(); aggregatedResultMap.put(set, aggregatedResult); } for (WellSet plate : setArrayIndices) { double result = Precision.round(aggregatedResultMap.get(plate), precision); double returned = Precision.round(aggregatedReturnedMap.get(plate), precision); assertTrue(result == returned); } }
From source file:com.github.jessemull.microflex.stat.statbiginteger.SampleVarianceBigIntegerTest.java
/** * Tests the plate statistics method using the values between the indices. *//*from w w w. ja va2 s . com*/ @Test public void testPlateIndices() { for (PlateBigInteger plate : arrayIndices) { int size = arrayIndices[0].first().size(); int begin = random.nextInt(size - 5); int end = (begin + 4) + random.nextInt(size - (begin + 4) + 1); Map<WellBigInteger, BigDecimal> resultMap = new TreeMap<WellBigInteger, BigDecimal>(); Map<WellBigInteger, BigDecimal> returnedMap = variance.plate(plate, begin, end - begin, mc); for (WellBigInteger well : plate) { double[] input = new double[well.size()]; int index = 0; for (BigInteger bi : well) { input[index++] = bi.doubleValue(); } double[] inputArray = ArrayUtils.subarray(input, begin, end); DescriptiveStatistics stat = new DescriptiveStatistics(inputArray); double resultDouble = stat.getVariance(); BigDecimal result = new BigDecimal(resultDouble); resultMap.put(well, result); } for (WellBigInteger well : plate) { BigDecimal result = resultMap.get(well); BigDecimal returned = returnedMap.get(well); BigDecimal[] corrected = correctRoundingErrors(result, returned); assertEquals(corrected[0], corrected[1]); } } }
From source file:com.github.jessemull.microflex.stat.statdouble.SampleVarianceDoubleWeightsTest.java
/** * Tests the aggregated plate statistics method using the values between the indices. *//*from ww w . j a v a2 s .c o m*/ @Test public void testAggregatedPlateIndices() { for (PlateDouble plate : arrayIndices) { int begin = random.nextInt(plate.first().size() - 4); int end = begin + random.nextInt(3) + 3; List<BigDecimal> resultList = new ArrayList<BigDecimal>(); double aggregatedReturned = Precision .round(variance.platesAggregated(plate, weightsIndices, begin, end - begin), precision); for (WellDouble well : plate) { List<BigDecimal> input = well.toBigDecimal().subList(begin, end); for (int i = 0; i < input.size(); i++) { resultList.add(input.get(i).multiply(new BigDecimal(weightsIndices[i]))); } } double[] inputAggregated = new double[resultList.size()]; for (int i = 0; i < resultList.size(); i++) { inputAggregated[i] = resultList.get(i).doubleValue(); } DescriptiveStatistics statAggregated = new DescriptiveStatistics(inputAggregated); double resultAggregated = Precision.round(statAggregated.getVariance(), precision); assertTrue(resultAggregated == aggregatedReturned); } }