Example usage for org.apache.hadoop.mapreduce RecordReader subclass-usage

Introduction

In this page you can find the example usage for org.apache.hadoop.mapreduce RecordReader subclass-usage.

Usage

From source file eu.scape_project.archiventory.hadoop.ArcRecordReader.java

/**
 *
 * @author shsdev https://github.com/shsdev
 * @version 0.2
 */
public final class ArcRecordReader extends RecordReader<Text, ArcRecord> {

From source file eu.scape_project.arcunpacker.mapreduce.ArcRecordReader.java

/**
 *
 * @author shsdev https://github.com/shsdev
 * @version 0.2
 */
public final class ArcRecordReader extends RecordReader<Text, HadoopArcRecord> {

From source file eu.scape_project.pt.mets.hadoop.MetsRecordReader.java

/**
 * MetsRecordReader class to read through a given xml document to output xml
 * blocks as records as specified by the start tag and end tag.
 * The records to be read must be nested within a root element in the xml document.
 * It is not allowed to have a record block as root (ie. a document with one record).
 *

From source file eu.scape_project.tb.wc.archd.hdreader.ArcRecordReader.java

/**
 *
 * @author shsdev https://github.com/shsdev
 * @version 0.2
 */
public final class ArcRecordReader extends RecordReader<Text, ArcRecord> {

From source file fi.tkk.ics.hadoop.bam.BAMRecordReader.java

/** The key is the bitwise OR of the reference sequence ID in the upper 32 bits
 * and the 0-based leftmost coordinate in the lower.
 */
public class BAMRecordReader extends RecordReader<LongWritable, SAMRecordWritable> {
    private final LongWritable key = new LongWritable();
    private final SAMRecordWritable record = new SAMRecordWritable();

From source file fi.tkk.ics.hadoop.bam.BCFRecordReader.java

/** See {@link VCFRecordReader} for the meaning of the key. */
public class BCFRecordReader extends RecordReader<LongWritable, VariantContextWritable> {
    private final LongWritable key = new LongWritable();
    private final VariantContextWritable vc = new VariantContextWritable();

    private BCF2Codec codec = new BCF2Codec();

From source file fi.tkk.ics.hadoop.bam.cli.plugins.chipster.Summarize.java

final class SummarizeRecordReader extends RecordReader<LongWritable, Range> {

    private final RecordReader<LongWritable, SAMRecordWritable> baseRR;

    private final LongWritable key = new LongWritable();
    private final List<Range> ranges = new ArrayList<Range>();

From source file fi.tkk.ics.hadoop.bam.cli.plugins.chipster.SummarySort.java

final class SortRecordReader extends RecordReader<LongWritable, Text> {

    private final LongWritable key = new LongWritable();

    private final BlockCompressedLineRecordReader lineRR = new BlockCompressedLineRecordReader();

From source file fi.tkk.ics.hadoop.bam.cli.plugins.Sort.java

final class SortRecordReader extends RecordReader<LongWritable, SAMRecordWritable> {
    private final RecordReader<LongWritable, SAMRecordWritable> baseRR;

    private Configuration conf;

    public SortRecordReader(RecordReader<LongWritable, SAMRecordWritable> rr) {

From source file fi.tkk.ics.hadoop.bam.SAMRecordReader.java

/** See {@link BAMRecordReader} for the meaning of the key. */
public class SAMRecordReader extends RecordReader<LongWritable, SAMRecordWritable> {
    private LongWritable key = new LongWritable();
    private SAMRecordWritable record = new SAMRecordWritable();

    private FSDataInputStream input;