Example usage for org.apache.wicket.markup.html.form.upload FileUpload getBytes

List of usage examples for org.apache.wicket.markup.html.form.upload FileUpload getBytes

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  5. FileUpload
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Introduction

In this page you can find the example usage for org.apache.wicket.markup.html.form.upload FileUpload getBytes.

Prototype

public byte[] getBytes()

Source Link

Usage

From source file:au.org.theark.lims.web.component.biospecimenupload.BiospecimenUploadStep1.java

License:Open Source License

private void saveFileInMemory(AjaxRequestTarget target) {
    // Retrieve file and store as Blob in database
    // TODO: AJAX-ified and asynchronous and hit database
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);
    Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());
    containerForm.getModelObject().getUpload().setPayload(payload);

    // Set details of Upload object
    containerForm.getModelObject().getUpload().setStudy(studyDdc.getModelObject());
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    au.org.theark.core.model.study.entity.FileFormat fileFormat = new au.org.theark.core.model.study.entity.FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);

    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(fileUpload.getClientFileName());
    containerForm.getModelObject().getUpload().setStartTime(new Date(System.currentTimeMillis()));
    containerForm.getModelObject().setUploadType(
            uploadTypeDdc.getModelObject() == null ? "Unknown" : uploadTypeDdc.getModelObject().getName());
    containerForm.getModelObject().getUpload().setArkFunction(
            iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN_UPLOAD));
    wizardForm.setFileName(fileUpload.getClientFileName());

    containerForm.getModelObject().getUpload()
            .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_AWAITING_VALIDATION));

    try {//  w w  w.  ja v a2 s.com
        iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
    } catch (Exception e) {
        error("There is a problem during the upload process.");
        getWizardForm().onError(target, null);
    }
}

From source file:au.org.theark.lims.web.component.biospecimenupload.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<UploadVO> containerForm, AjaxRequestTarget target) {
    // Implement Save/Update
    if (containerForm.getModelObject().getUpload().getId() == null) {
        setMultiPart(true); // multipart required for file uploads

        // Set study in context
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);

        // TODO: AJAX-ified and asynchronous and hit database
        FileUpload fileUpload = fileUploadField.getFileUpload();
        Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());

        containerForm.getModelObject().getUpload().setPayload(payload);

        // Set details of Upload object
        containerForm.getModelObject().getUpload().setStudy(study);

        byte[] byteArray = fileUpload.getMD5();
        String checksum = getHex(byteArray);
        containerForm.getModelObject().getUpload().setChecksum(checksum);
        containerForm.getModelObject().getUpload().setFilename(fileUpload.getClientFileName());

        // Save//from  w ww . j a v  a  2s  . c  o  m
        containerForm.getModelObject().getUpload().setArkFunction(arkFunction);
        containerForm.getModelObject().getUpload()
                .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_COMPLETED));
        try {
            iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
        } catch (Exception e) {
            error("There is a problem during the upload process.");
            processErrors(target);
        }

        this.info("Subject upload " + containerForm.getModelObject().getUpload().getFilename()
                + " was created successfully");
        processErrors(target);
    } else {
        // Update
        containerForm.getModelObject().getUpload().setArkFunction(arkFunction);
        iArkCommonService.updateUpload(containerForm.getModelObject().getUpload());
        this.info("Subject upload " + containerForm.getModelObject().getUpload().getFilename()
                + " was updated successfully");
        processErrors(target);
    }

    onSavePostProcess(target);
    /*
     * TODO:(CE) To handle Business and System Exceptions here
     */
}

From source file:au.org.theark.lims.web.component.bioupload.BioUploadStep1.java

License:Open Source License

private void saveFileInMemory(AjaxRequestTarget target) {
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);
    Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());

    containerForm.getModelObject().getUpload().setPayload(payload);
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    au.org.theark.core.model.study.entity.FileFormat fileFormat = new au.org.theark.core.model.study.entity.FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);

    containerForm.getModelObject().getUpload().setStudy(study);
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(filename);
    containerForm.getModelObject().getUpload().setStartTime(new Date(System.currentTimeMillis()));
    if (containerForm.getModelObject().getUpload().getUploadType() != null) {
        if (containerForm.getModelObject().getUpload().getUploadType().getName()
                .equalsIgnoreCase("Biospecimen Custom Data")) {
            containerForm.getModelObject().getUpload().setArkFunction(
                    iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN));
        } else if (containerForm.getModelObject().getUpload().getUploadType().getName()
                .equalsIgnoreCase("Biocollection Custom Data")) {
            //containerForm.getModelObject().getUpload().setArkFunction(iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_LIMS_COLLECTION));
            containerForm.getModelObject().getUpload().setArkFunction(
                    iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_LIMS_CUSTOM_FIELD));
        } else {/*from   w ww  . j a v a 2  s  .  c o m*/
            log.error("\n\n\n\n\n\n\n\n\n\n\n uploadType unrecognized");
        }
        //containerForm.getModelObject().getUpload().setArkFunction(iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_SUBJECT_UPLOAD));
        log.info("\n\n\n\n\n\n\n\n\n\n\n\n upload type = "
                + containerForm.getModelObject().getUpload().getUploadType().getName());
    } else {
        log.error("\n\n\n\n\n\n\n\n\n\n\n uploadType is null");
    }
    wizardForm.setFileName(filename);

    containerForm.getModelObject().getUpload()
            .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_AWAITING_VALIDATION));
    try {
        iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
    } catch (Exception e) {
        error("There is a problem during the upload process.");
        getWizardForm().onError(target, null);
    }
}

From source file:au.org.theark.phenotypic.web.component.phenodataupload.PhenoDataUploadStep1.java

License:Open Source License

private void saveFileInMemory(AjaxRequestTarget target) {
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);
    Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());

    containerForm.getModelObject().getUpload().setPayload(payload);
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    au.org.theark.core.model.study.entity.FileFormat fileFormat = new au.org.theark.core.model.study.entity.FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);

    containerForm.getModelObject().getUpload().setStudy(study);
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(filename);
    containerForm.getModelObject().getUpload().setStartTime(new Date(System.currentTimeMillis()));
    containerForm.getModelObject().getUpload().setArkFunction(
            iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_FIELD_DATA_UPLOAD));
    wizardForm.setFileName(filename);//from www.j  a v a2  s  .  com

    containerForm.getModelObject().getUpload()
            .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_COMPLETED));
    //TODO analyse how many times this is saved and where it should be saved
    try {
        iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
        containerForm.getModelObject().setPreviousStepOutCompleted(true);

    } catch (Exception e) {
        // TODO Auto-generated catch block
        error("There is a problem during the upload process.");
        getWizardForm().onError(target, null);

    }

}

From source file:au.org.theark.study.web.component.correspondence.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<CorrespondenceVO> containerForm, AjaxRequestTarget target) {

    CorrespondenceVO correspondenceVO = containerForm.getModelObject();

    if (correspondenceVO.getCorrespondence().getId() == null) {

        if ((correspondenceVO.getWorkRequest() == null && correspondenceVO.getBillableItemType() != null)) {
            this.error("Work request must be set if a billable item type is specified");
            processErrors(target);/*from  w ww .ja v  a2s  .c om*/
            return;
        }

        if (correspondenceVO.getWorkRequest() != null && correspondenceVO.getBillableItemType() == null) {
            this.error("Billable item type must be set if a work request is specified");
            processErrors(target);
            return;
        }
    }

    if (containerForm.getModelObject().getWorkRequest() != null
            && containerForm.getModelObject().getBillableItemType() != null) {
        BillableItem billableItem = createAutomatedBillableItem();
        containerForm.getModelObject().getCorrespondence().setBillableItem(billableItem);
    }

    Long personSessionId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);

    // get the person and set it on the correspondence object
    try {
        // set the Person in context
        //Person person = studyService.getPerson(personSessionId);

        // set the Study in context
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);
        LinkSubjectStudy lss = studyService.getSubjectLinkedToStudy(personSessionId, study);
        containerForm.getModelObject().getCorrespondence().setLss(lss);
        //containerForm.getModelObject().getCorrespondence().setStudy(study);

        if (containerForm.getModelObject().getCorrespondence().getId() == null) {
            // store correspondence file attachment
            if (fileUploadField != null && fileUploadField.getFileUpload() != null) {
                FileUpload fileUpload = fileUploadField.getFileUpload();

                byte[] byteArray = fileUpload.getMD5();
                String checksum = getHex(byteArray);

                containerForm.getModelObject().getCorrespondence().setAttachmentPayload(fileUpload.getBytes());
                containerForm.getModelObject().getCorrespondence()
                        .setAttachmentFilename(fileUpload.getClientFileName());
                containerForm.getModelObject().getCorrespondence().setAttachmentChecksum(checksum);
            }

            // save
            studyService.create(containerForm.getModelObject().getCorrespondence());
            this.info("Correspondence was successfully added and linked to subject: " + lss.getSubjectUID());
            processErrors(target);
        } else {
            // store correspondence file attachment
            String checksum = null;
            if (fileUploadField != null && fileUploadField.getFileUpload() != null) {
                // retrieve file and store as Blob in database
                FileUpload fileUpload = fileUploadField.getFileUpload();

                byte[] byteArray = fileUpload.getMD5();
                checksum = getHex(byteArray);

                containerForm.getModelObject().getCorrespondence().setAttachmentPayload(fileUpload.getBytes());
                containerForm.getModelObject().getCorrespondence()
                        .setAttachmentFilename(fileUpload.getClientFileName());
                //               containerForm.getModelObject().getCorrespondence().setAttachementChecksum(checksum);
            }

            studyService.update(containerForm.getModelObject().getCorrespondence(), checksum);
            this.info("Correspondence was successfully updated and linked to subject: " + lss.getSubjectUID());
            processErrors(target);
        }
        // invoke backend to persist the correspondence

        workTrackingContainer.setVisible(false);
        onSavePostProcess(target);
    } catch (EntityNotFoundException ex) {
        ex.printStackTrace();
    } catch (ArkSystemException ex) {
        ex.printStackTrace();
    }
}

From source file:au.org.theark.study.web.component.subjectUpload.SubjectUploadStep1.java

License:Open Source License

private void saveFileInMemory() {
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);
    Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());

    containerForm.getModelObject().getUpload().setPayload(payload);
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    au.org.theark.core.model.study.entity.FileFormat fileFormat = new au.org.theark.core.model.study.entity.FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);

    containerForm.getModelObject().getUpload().setStudy(study);
    //containerForm.getModelObject().getUpload().set;
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(filename);
    containerForm.getModelObject().getUpload().setStartTime(new Date(System.currentTimeMillis()));
    containerForm.getModelObject().getUpload().setArkFunction(
            iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_STUDY_STUDY_DATA_UPLOAD));
    wizardForm.setFileName(filename);/*from  w ww. j a  va 2  s .  c  o m*/

    containerForm.getModelObject().getUpload()
            .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_AWAITING_VALIDATION));

    //Move to step 2 to add the file type validation 
    //      iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
}

From source file:com.doculibre.constellio.wicket.panels.admin.searchInterface.LogoConfigPanel.java

License:Open Source License

public LogoConfigPanel(String id) {
    super(id);//ww  w. j  a  v a  2s. c  o m

    Form form = new Form("form");
    add(form);

    form.add(new FeedbackPanel("feedback"));

    final FileUploadField logoSmallField = new FileUploadField("logoSmall");
    form.add(logoSmallField);

    final FileUploadField logoLargeField = new FileUploadField("logoLarge");
    form.add(logoLargeField);

    Button submitButton = new Button("submitButton") {
        @Override
        public void onSubmit() {
            SearchInterfaceConfigServices searchInterfaceConfigServices = ConstellioSpringUtils
                    .getSearchInterfaceConfigServices();
            SearchInterfaceConfig searchInterfaceConfig = searchInterfaceConfigServices.get();

            FileUpload uploadLogoSmall = logoSmallField.getFileUpload();
            FileUpload uploadLogoLarge = logoLargeField.getFileUpload();

            if (uploadLogoSmall != null) {
                if (uploadLogoSmall.getSize() <= SearchInterfaceConfig.LOGO_MAXIMUM_SIZE) {
                    searchInterfaceConfig.setLogoSmallContent(uploadLogoSmall.getBytes());
                } else {
                    String size = FileSizeUtils.formatSize(uploadLogoSmall.getSize(), 3);
                    String maxSize = FileSizeUtils.formatSize(SearchInterfaceConfig.LOGO_MAXIMUM_SIZE, 3);
                    String[] params = new String[] { size, maxSize };
                    String error = new StringResourceModel("logoSmallTooBig", LogoConfigPanel.this, null,
                            params).getString();
                    error(error);
                    uploadLogoSmall = null;
                }

            }
            if (uploadLogoLarge != null) {

                if (uploadLogoLarge.getSize() <= SearchInterfaceConfig.LOGO_MAXIMUM_SIZE) {
                    searchInterfaceConfig.setLogoLargeContent(uploadLogoLarge.getBytes());
                } else {
                    String size = FileSizeUtils.formatSize(uploadLogoLarge.getSize(), 3);
                    String maxSize = FileSizeUtils.formatSize(SearchInterfaceConfig.LOGO_MAXIMUM_SIZE, 3);
                    String[] params = new String[] { size, maxSize };
                    String error = new StringResourceModel("logoLargeTooBig", LogoConfigPanel.this, null,
                            params).getString();
                    error(error);
                    uploadLogoLarge = null;
                }
            }
            if (uploadLogoSmall != null || uploadLogoLarge != null) {
                EntityManager entityManager = ConstellioPersistenceContext.getCurrentEntityManager();
                if (!entityManager.getTransaction().isActive()) {
                    entityManager.getTransaction().begin();
                }
                searchInterfaceConfigServices.makePersistent(searchInterfaceConfig);
                entityManager.getTransaction().commit();
            }
        }
    };
    form.add(submitButton);
}

From source file:com.evolveum.midpoint.web.component.input.UploadDownloadPanel.java

License:Apache License

private void initLayout(final boolean isReadOnly) {
    final FileUploadField fileUpload = new FileUploadField(ID_INPUT_FILE);
    Form form = this.findParent(Form.class);
    fileUpload.add(new AjaxFormSubmitBehavior(form, "change") {
        @Override/* w  w w  . j  a va2s  .  c  o m*/
        protected void onSubmit(AjaxRequestTarget target) {
            super.onSubmit(target);
            Component input = getInputFile();
            try {
                FileUpload uploadedFile = getFileUpload();
                updateValue(uploadedFile.getBytes());
                LOGGER.trace("Upload file success.");
                input.success(getString("UploadPanel.message.uploadSuccess"));
            } catch (Exception e) {
                LOGGER.trace("Upload file error.", e);
                input.error(getString("UploadPanel.message.uploadError") + " " + e.getMessage());
            }
        }
    });
    fileUpload.setOutputMarkupId(true);
    add(fileUpload);

    final AjaxDownloadBehaviorFromStream downloadBehavior = new AjaxDownloadBehaviorFromStream() {

        @Override
        protected InputStream initStream() {
            return getStream();
        }
    };
    add(downloadBehavior);

    add(new AjaxSubmitButton(ID_BUTTON_DOWNLOAD) {

        @Override
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            downloadPerformed(downloadBehavior, target);
        }
    });

    add(new AjaxSubmitButton(ID_BUTTON_DELETE) {

        @Override
        protected void onSubmit(AjaxRequestTarget target, Form<?> form) {
            removeFilePerformed(target);
        }
    });

    add(new VisibleEnableBehaviour() {
        @Override
        public boolean isVisible() {
            return !isReadOnly;

        }

    });
}

From source file:com.evolveum.midpoint.web.component.input.UploadDownloadPanel.java

License:Apache License

public void uploadFilePerformed(AjaxRequestTarget target) {
    Component input = get(ID_INPUT_FILE);
    try {/*from w w  w .j av a  2  s  . com*/
        FileUpload uploadedFile = getFileUpload();
        updateValue(uploadedFile.getBytes());
        LOGGER.trace("Upload file success.");
        input.success(getString("UploadPanel.message.uploadSuccess"));
    } catch (Exception e) {
        LOGGER.trace("Upload file error.", e);
        input.error(getString("UploadPanel.message.uploadError") + " " + e.getMessage());
    }
}

From source file:com.evolveum.midpoint.web.page.admin.cases.PageCaseWorkItem.java

License:Apache License

private void closeCaseWorkItemPerformed(AjaxRequestTarget target) {
    OperationResult result = new OperationResult(OPERATION_SAVE_CASE_WORK_ITEM);
    Task task = createSimpleTask(OPERATION_SAVE_CASE_WORK_ITEM);
    try {//from   w w  w  . j ava2s .  co  m

        CaseWorkItemDto dto = caseWorkItemDtoModel.getObject();
        CaseManagementService cms = getCaseManagementService();
        AbstractWorkItemOutputType output = new AbstractWorkItemOutputType().comment(dto.getComment())
                .outcome("SUCCESS");
        FileUploadField evidenceUploadField = (FileUploadField) get(ID_MAIN_FORM).get(ID_CASE_WORK_ITEM_FORM)
                .get(ID_CASE_WORK_ITEM_FORM_EVIDENCE);
        if (evidenceUploadField != null) {
            FileUpload evidence = evidenceUploadField.getFileUpload();
            if (evidence != null) {
                String filename = evidence.getClientFileName();
                String contentType = evidence.getContentType();
                output = output.evidence(evidence.getBytes()).evidenceContentType(contentType)
                        .evidenceFilename(filename);
            }
        }
        cms.completeWorkItem(caseId, caseWorkItemId, output, task, result);
    } catch (Exception ex) {
        result.recordFatalError("Couldn't close case work item.", ex);
        LoggingUtils.logUnexpectedException(LOGGER, "Couldn't close case work item", ex);
    }
    processResult(target, result, false);
}