Example usage for org.apache.wicket.markup.html.form.upload FileUpload getClientFileName

Introduction

In this page you can find the example usage for org.apache.wicket.markup.html.form.upload FileUpload getClientFileName.

Prototype

public String getClientFileName() 

Source Link

Usage

From source file:au.org.theark.core.util.LoadCsvFileHelper.java

License:Open Source License

/**
 * Convert the specified fileUpload to CSV format, and save as a CsvBlob
 * // ww w.  j ava  2s . c o  m
 * @param fileUpload
 * @param delimiterCharacter
 */
public void convertToCSVAndWriteToFile(FileUpload fileUpload, char delimiterCharacter) {
    String filename = fileUpload.getClientFileName();
    String fileFormat = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    InputStream inputStream = null;

    try {
        // If Excel, convert to CSV for validation
        if (fileFormat.equalsIgnoreCase("XLS")) {
            inputStream = convertXlsInputStreamToCsv(fileUpload.getInputStream());
        } else {
            inputStream = fileUpload.getInputStream();
        }

        writeToTempFile(inputStream);
    } catch (IOException e) {
        log.error(".convertToCSVAndSave IOException: " + e.getMessage());
    }

    this.columnNameList = getColumnsFromHeader(inputStream, delimiterCharacter);
}

---

From source file:au.org.theark.core.web.component.customfieldupload.CustomFieldUploadStep1.java

License:Open Source License

private void saveFileInMemory() {
    // Set study in context
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);

    // Retrieve file and store as Blob in database
    // TODO: AJAX-ified and asynchronous and hit database
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);

    InputStream inputStream = null;
    BufferedOutputStream outputStream = null;
    File temp = null;/*  w w w  . j a v  a 2  s .c  o m*/
    try {
        // Copy all the contents of the file upload to a temp file (to read multiple times)...
        inputStream = containerForm.getModelObject().getFileUpload().getInputStream();
        // Create temp file
        temp = File.createTempFile("customFieldUploadBlob", ".tmp");
        containerForm.getModelObject().setTempFile(temp);
        // Delete temp file when program exits (just in case manual delete fails later)
        temp.deleteOnExit();
        // Write to temp file
        outputStream = new BufferedOutputStream(new FileOutputStream(temp));
        IOUtils.copy(inputStream, outputStream);
    } catch (IOException ioe) {
        log.error("IOException " + ioe.getMessage());
        // Something failed, so there is temp file is not valid (step 2 should check for null)
        temp.delete();
        temp = null;
        containerForm.getModelObject().setTempFile(temp);
    } finally {
        if (inputStream != null) {
            try {
                inputStream.close();
            } catch (IOException e) {
                log.error("Unable to close inputStream: " + e.getMessage());
            }
        }
        if (outputStream != null) {
            try {
                outputStream.flush();
                outputStream.close();
            } catch (IOException e) {
                log.error("Unable to close outputStream: " + e.getMessage());
            }
        }
    }

    // Set details of Upload object
    containerForm.getModelObject().getUpload().setStudy(study);
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    FileFormat fileFormat = new FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);

    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(fileUpload.getClientFileName());
    wizardForm.setFileName(fileUpload.getClientFileName());
}

---

From source file:au.org.theark.lims.web.component.biospecimenupload.BiospecimenUploadStep1.java

License:Open Source License

private void saveFileInMemory(AjaxRequestTarget target) {
    // Retrieve file and store as Blob in database
    // TODO: AJAX-ified and asynchronous and hit database
    FileUpload fileUpload = fileUploadField.getFileUpload();
    containerForm.getModelObject().setFileUpload(fileUpload);
    Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());
    containerForm.getModelObject().getUpload().setPayload(payload);

    // Set details of Upload object
    containerForm.getModelObject().getUpload().setStudy(studyDdc.getModelObject());
    String filename = containerForm.getModelObject().getFileUpload().getClientFileName();
    String fileFormatName = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
    au.org.theark.core.model.study.entity.FileFormat fileFormat = new au.org.theark.core.model.study.entity.FileFormat();
    fileFormat = iArkCommonService.getFileFormatByName(fileFormatName);
    containerForm.getModelObject().getUpload().setFileFormat(fileFormat);

    byte[] byteArray = fileUpload.getMD5();
    String checksum = getHex(byteArray);
    containerForm.getModelObject().getUpload().setChecksum(checksum);
    containerForm.getModelObject().getUpload().setFilename(fileUpload.getClientFileName());
    containerForm.getModelObject().getUpload().setStartTime(new Date(System.currentTimeMillis()));
    containerForm.getModelObject().setUploadType(
            uploadTypeDdc.getModelObject() == null ? "Unknown" : uploadTypeDdc.getModelObject().getName());
    containerForm.getModelObject().getUpload().setArkFunction(
            iArkCommonService.getArkFunctionByName(Constants.FUNCTION_KEY_VALUE_BIOSPECIMEN_UPLOAD));
    wizardForm.setFileName(fileUpload.getClientFileName());

    containerForm.getModelObject().getUpload()
            .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_AWAITING_VALIDATION));

    try {/*from www .j a  v a2 s  .c  om*/
        iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
    } catch (Exception e) {
        error("There is a problem during the upload process.");
        getWizardForm().onError(target, null);
    }
}

---

From source file:au.org.theark.lims.web.component.biospecimenupload.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<UploadVO> containerForm, AjaxRequestTarget target) {
    // Implement Save/Update
    if (containerForm.getModelObject().getUpload().getId() == null) {
        setMultiPart(true); // multipart required for file uploads

        // Set study in context
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);

        // TODO: AJAX-ified and asynchronous and hit database
        FileUpload fileUpload = fileUploadField.getFileUpload();
        Payload payload = iArkCommonService.createPayload(fileUpload.getBytes());

        containerForm.getModelObject().getUpload().setPayload(payload);

        // Set details of Upload object
        containerForm.getModelObject().getUpload().setStudy(study);

        byte[] byteArray = fileUpload.getMD5();
        String checksum = getHex(byteArray);
        containerForm.getModelObject().getUpload().setChecksum(checksum);
        containerForm.getModelObject().getUpload().setFilename(fileUpload.getClientFileName());

        // Save//from www .  ja  va 2  s .com
        containerForm.getModelObject().getUpload().setArkFunction(arkFunction);
        containerForm.getModelObject().getUpload()
                .setUploadStatus(iArkCommonService.getUploadStatusFor(Constants.UPLOAD_STATUS_COMPLETED));
        try {
            iArkCommonService.createUpload(containerForm.getModelObject().getUpload());
        } catch (Exception e) {
            error("There is a problem during the upload process.");
            processErrors(target);
        }

        this.info("Subject upload " + containerForm.getModelObject().getUpload().getFilename()
                + " was created successfully");
        processErrors(target);
    } else {
        // Update
        containerForm.getModelObject().getUpload().setArkFunction(arkFunction);
        iArkCommonService.updateUpload(containerForm.getModelObject().getUpload());
        this.info("Subject upload " + containerForm.getModelObject().getUpload().getFilename()
                + " was updated successfully");
        processErrors(target);
    }

    onSavePostProcess(target);
    /*
     * TODO:(CE) To handle Business and System Exceptions here
     */
}

---

From source file:au.org.theark.lims.web.component.bioupload.BioUploadStep2.java

License:Open Source License

@Override
public void onStepInNext(AbstractWizardForm<?> form, AjaxRequestTarget target) {
    try {/*from  w w  w  .j  a  v a2  s. com*/
        FileUpload fileUpload = containerForm.getModelObject().getFileUpload();
        InputStream inputStream = fileUpload.getInputStream();//TODO : should something this big be thrown around model object in wicket?
        String filename = fileUpload.getClientFileName();
        String fileFormat = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
        char delimChar = containerForm.getModelObject().getUpload().getDelimiterType().getDelimiterCharacter();

        // Only allow csv, txt or xls  TODO : if we are hardcoding things like this, why do we fetch file formats from db and store as a fk reference?
        if (!(fileFormat.equalsIgnoreCase("CSV") || fileFormat.equalsIgnoreCase("TXT")
                || fileFormat.equalsIgnoreCase("XLS"))) {
            throw new FileFormatException();
        }
        //TODO: remove hardcode
        if (containerForm.getModelObject().getUpload().getUploadType().getName()
                .equalsIgnoreCase("Biospecimen Custom Data")) {
            BioCustomFieldUploadValidator subjectUploadValidator = new BioCustomFieldUploadValidator(
                    iArkCommonService, iLimsService);
            validationMessages = subjectUploadValidator
                    .validateBiospecimenCustomFieldFileFormat(containerForm.getModelObject());
        } else if (containerForm.getModelObject().getUpload().getUploadType().getName()
                .equalsIgnoreCase("Biocollection Custom Data")) {
            //TODO : custom field validation
            BioCustomFieldUploadValidator customFieldUploadValidator = new BioCustomFieldUploadValidator(
                    iArkCommonService, iLimsService);
            validationMessages = customFieldUploadValidator
                    .validateBiocollectionCustomFieldFileFormat(containerForm.getModelObject());
        } else {
            //TODO : Throw error back to user
        }

        ArkExcelWorkSheetAsGrid arkExcelWorkSheetAsGrid = new ArkExcelWorkSheetAsGrid("gridView", inputStream,
                fileFormat, delimChar, fileUpload, iArkCommonService
                        .getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue(),
                containerForm.getModelObject().getUpload().getUploadType());
        arkExcelWorkSheetAsGrid.setOutputMarkupId(true);
        WebMarkupContainer wizardDataGridKeyContainer = new WebMarkupContainer("wizardDataGridKeyContainer");
        wizardDataGridKeyContainer.setVisible(false);
        wizardDataGridKeyContainer.setOutputMarkupId(true);
        form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
        form.getWizardPanelFormContainer().addOrReplace(arkExcelWorkSheetAsGrid);
        form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
        form.getWizardPanelFormContainer().addOrReplace(wizardDataGridKeyContainer);
        target.add(form.getWizardPanelFormContainer());

        containerForm.getModelObject().setValidationMessages(validationMessages);
        validationMessage = containerForm.getModelObject().getValidationMessagesAsString();
        addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));

        if (validationMessage != null && validationMessage.length() > 0) {
            log.warn("validation = " + validationMessage);
            form.getNextButton().setEnabled(false);
            target.add(form.getWizardButtonContainer());
            downloadValMsgButton = new ArkDownloadAjaxButton("downloadValMsg", "ValidationMessage",
                    validationMessage, "txt") {
                private static final long serialVersionUID = 1L;

                @Override
                protected void onError(AjaxRequestTarget target, Form<?> form) {
                    this.error("Unexpected Error: Download request could not be processed");
                }
            };
            addOrReplace(downloadValMsgButton);
            target.add(downloadValMsgButton);
        }

    } catch (IOException e) {
        validationMessage = "Error attempting to display the file. Please check the file and try again.";
        addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
        form.getNextButton().setEnabled(false);
        target.add(form.getWizardButtonContainer());
    } catch (FileFormatException ffe) {
        validationMessage = "Error uploading file. You can only upload files of type: CSV (comma separated values), TXT (text), or XLS (Microsoft Excel file)";
        addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
        form.getNextButton().setEnabled(false);
        target.add(form.getWizardButtonContainer());
    }
    //TODO : finally?  close io?
}

---

From source file:au.org.theark.phenotypic.web.component.phenodataupload.PhenoDataUploadStep2.java

License:Open Source License

@Override
public void onStepInNext(AbstractWizardForm<?> form, AjaxRequestTarget target) {
    if (containerForm.getModelObject().getPreviousStepOutCompleted()) {
        try {//w  w w.j a va  2  s .com
            FileUpload fileUpload = containerForm.getModelObject().getFileUpload();
            InputStream inputStream = fileUpload.getInputStream();//TODO : should something this big be thrown around model object in wicket?
            String filename = fileUpload.getClientFileName();
            String fileFormat = filename.substring(filename.lastIndexOf('.') + 1).toUpperCase();
            char delimChar = containerForm.getModelObject().getUpload().getDelimiterType()
                    .getDelimiterCharacter();

            // Only allow csv, txt or xls  TODO : if we are hardcoding things like this, why do we fetch file formats from db and store as a fk reference?
            if (!(fileFormat.equalsIgnoreCase("CSV") || fileFormat.equalsIgnoreCase("TXT")
                    || fileFormat.equalsIgnoreCase("XLS"))) {
                throw new FileFormatException();
            }

            PhenoDataUploadValidator phenoDataUploadValidator = new PhenoDataUploadValidator(iArkCommonService,
                    iPhenotypicService);
            PhenoDataSetCollection phenoCollectionCriteria = containerForm.getModelObject()
                    .getPhenoCollection();
            PhenoDataSetGroup cfgSelected = containerForm.getModelObject().getPhenoDataSetGroup();
            try {
                validationMessages = phenoDataUploadValidator.validateCustomFieldFileFormat(
                        containerForm.getModelObject(), phenoCollectionCriteria, cfgSelected);
            } catch (ArkBaseException arkBaseException) {
                validationMessage = arkBaseException.getMessage();
            }

            ArkExcelWorkSheetAsGrid arkExcelWorkSheetAsGrid = new ArkExcelWorkSheetAsGrid("gridView",
                    inputStream, fileFormat, delimChar, fileUpload, iArkCommonService
                            .getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue(),
                    containerForm.getModelObject().getUpload().getUploadType());
            arkExcelWorkSheetAsGrid.setOutputMarkupId(true);
            //WebMarkupContainer wizardDataGridKeyContainer = new WebMarkupContainer("wizardDataGridKeyContainer");
            //wizardDataGridKeyContainer.setVisible(false);
            //wizardDataGridKeyContainer.setOutputMarkupId(true);
            form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
            form.getWizardPanelFormContainer().addOrReplace(arkExcelWorkSheetAsGrid);
            form.setArkExcelWorkSheetAsGrid(arkExcelWorkSheetAsGrid);
            //form.getWizardPanelFormContainer().addOrReplace(wizardDataGridKeyContainer);
            target.add(form.getWizardPanelFormContainer());

            containerForm.getModelObject().setValidationMessages(validationMessages);
            validationMessage = containerForm.getModelObject().getValidationMessagesAsString();
            addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));

            if (validationMessage != null && validationMessage.length() > 0) {

                this.containerForm.getModelObject().getUpload()
                        .setUploadStatus(iArkCommonService.getUploadStatusFor(
                                au.org.theark.phenotypic.web.Constants.UPLOAD_STATUS_OF_ERROR_IN_FILE_VALIDATION));
                this.containerForm.getModelObject().getUpload().setFilename(filename);//have to reset this because the container has the file name...luckily it never changes 
                iArkCommonService.updateUpload(this.containerForm.getModelObject().getUpload());

                log.warn("validation = " + validationMessage);
                form.getNextButton().setEnabled(false);
                target.add(form.getWizardButtonContainer());
                downloadValMsgButton = new ArkDownloadAjaxButton("downloadValMsg", "ValidationMessage",
                        validationMessage, "txt") {
                    private static final long serialVersionUID = 1L;

                    @Override
                    protected void onError(AjaxRequestTarget target, Form<?> form) {
                        this.error("Unexpected Error: Download request could not be processed");
                    }
                };
                addOrReplace(downloadValMsgButton);
                target.add(downloadValMsgButton);
            }

        } catch (IOException e) {
            validationMessage = "Error attempting to display the file. Please check the file and try again.";
            addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
            form.getNextButton().setEnabled(false);
            target.add(form.getWizardButtonContainer());
        } catch (FileFormatException ffe) {
            validationMessage = "Error uploading file. You can only upload files of type: CSV (comma separated values), TXT (text), or XLS (Microsoft Excel file)";
            addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
            form.getNextButton().setEnabled(false);
            target.add(form.getWizardButtonContainer());
        }
    } else {
        validationMessage = "Step 1 is not completed properly.";
        addOrReplace(new MultiLineLabel("multiLineLabel", validationMessage));
        form.getNextButton().setEnabled(false);
        target.add(form.getWizardButtonContainer());
    }
    //TODO : finally?  close io?
}

---

From source file:au.org.theark.study.web.component.attachments.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<SubjectVO> containerForm, AjaxRequestTarget target) {
    LinkSubjectStudy linkSubjectStudy = null;
    Long studyId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
    Study study = iArkCommonService.getStudy(studyId);
    Long sessionPersonId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
    String userId = SecurityUtils.getSubject().getPrincipal().toString();

    try {/* w  ww.  j  av a  2 s .c o  m*/
        linkSubjectStudy = iArkCommonService.getSubject(sessionPersonId, study);
        containerForm.getModelObject().getSubjectFile().setLinkSubjectStudy(linkSubjectStudy);

        // Implement Save/Update
        if (containerForm.getModelObject().getSubjectFile().getId() == null) {
            // required for file uploads
            setMultiPart(true);

            // Retrieve file and store as Blob in database
            // TODO: AJAX-ified and asynchronous and hit database
            FileUpload fileSubjectFile = fileSubjectFileField.getFileUpload();

            try {
                containerForm.getModelObject().getSubjectFile()
                        .setPayload(IOUtils.toByteArray(fileSubjectFile.getInputStream()));
            } catch (IOException e) {
                log.error("IOException trying to convert inputstream" + e);
            }

            byte[] byteArray = fileSubjectFile.getMD5();
            String checksum = getHex(byteArray);

            // Set details of ConsentFile object
            containerForm.getModelObject().getSubjectFile().setChecksum(checksum);
            containerForm.getModelObject().getSubjectFile().setFilename(fileSubjectFile.getClientFileName());
            containerForm.getModelObject().getSubjectFile().setUserId(userId);

            // Save
            iStudyService.create(containerForm.getModelObject().getSubjectFile());
            this.info("Attachment " + containerForm.getModelObject().getSubjectFile().getFilename()
                    + " was created successfully");
            //            processErrors(target);
        } else {
            FileUpload fileSubjectFile = fileSubjectFileField.getFileUpload();

            try {
                containerForm.getModelObject().getSubjectFile()
                        .setPayload(IOUtils.toByteArray(fileSubjectFile.getInputStream()));
            } catch (IOException e) {
                log.error("IOException trying to convert inputstream" + e);
            }

            byte[] byteArray = fileSubjectFile.getMD5();
            String checksum = getHex(byteArray);

            // Set details of ConsentFile object
            //containerForm.getModelObject().getSubjectFile().setChecksum(checksum);
            containerForm.getModelObject().getSubjectFile().setFilename(fileSubjectFile.getClientFileName());
            containerForm.getModelObject().getSubjectFile().setUserId(userId);

            // Update
            iStudyService.update(containerForm.getModelObject().getSubjectFile(), checksum);
            this.info("Attachment " + containerForm.getModelObject().getSubjectFile().getFilename()
                    + " was updated successfully");
        }

        processErrors(target);
        onSavePostProcess(target);
        AjaxButton deleteButton = (AjaxButton) arkCrudContainerVO.getEditButtonContainer().get("delete");
        deleteButton.setEnabled(false);

    } catch (EntityNotFoundException e) {
        this.error("The record you tried to update is no longer available in the system");
    } catch (ArkSystemException e) {
        this.error("Saving the file attachment failed. Please contact The Ark administrator.");
    }
    processErrors(target);
}

---

From source file:au.org.theark.study.web.component.consent.form.DetailForm.java

License:Open Source License

private void createConsentFile() throws ArkSystemException {
    FileUpload fileSubjectFile = fileUploadField.getFileUpload();

    if (fileSubjectFile != null) {
        LinkSubjectStudy linkSubjectStudy = null;
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);
        Long sessionPersonId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);

        try {// w ww .  jav a 2  s.  c  om
            linkSubjectStudy = iArkCommonService.getSubject(sessionPersonId, study);
            containerForm.getModelObject().getSubjectFile().setLinkSubjectStudy(linkSubjectStudy);

            containerForm.getModelObject().getSubjectFile()
                    .setPayload(IOUtils.toByteArray(fileSubjectFile.getInputStream()));

            byte[] byteArray = fileSubjectFile.getMD5();
            String checksum = getHex(byteArray);

            // Set details of Consent File object
            containerForm.getModelObject().getSubjectFile()
                    .setStudyComp(containerForm.getModelObject().getConsent().getStudyComp());
            containerForm.getModelObject().getSubjectFile()
                    .setComments(containerForm.getModelObject().getConsent().getComments());
            containerForm.getModelObject().getSubjectFile().setChecksum(checksum);
            containerForm.getModelObject().getSubjectFile().setFilename(fileSubjectFile.getClientFileName());
            containerForm.getModelObject().getSubjectFile()
                    .setUserId(SecurityUtils.getSubject().getPrincipals().getPrimaryPrincipal().toString());

            // Save
            iStudyService.create(containerForm.getModelObject().getSubjectFile());
            this.info("Consent file: " + containerForm.getModelObject().getSubjectFile().getFilename()
                    + " was created successfully");
        } catch (IOException ioe) {
            log.error("Failed to save the uploaded file: " + ioe);
        } catch (EntityNotFoundException e) {
            log.error(e.getMessage());
        }
    }
}

---

From source file:au.org.theark.study.web.component.correspondence.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<CorrespondenceVO> containerForm, AjaxRequestTarget target) {

    CorrespondenceVO correspondenceVO = containerForm.getModelObject();

    if (correspondenceVO.getCorrespondence().getId() == null) {

        if ((correspondenceVO.getWorkRequest() == null && correspondenceVO.getBillableItemType() != null)) {
            this.error("Work request must be set if a billable item type is specified");
            processErrors(target);/*from   w ww .ja v a2s  .  c o  m*/
            return;
        }

        if (correspondenceVO.getWorkRequest() != null && correspondenceVO.getBillableItemType() == null) {
            this.error("Billable item type must be set if a work request is specified");
            processErrors(target);
            return;
        }
    }

    if (containerForm.getModelObject().getWorkRequest() != null
            && containerForm.getModelObject().getBillableItemType() != null) {
        BillableItem billableItem = createAutomatedBillableItem();
        containerForm.getModelObject().getCorrespondence().setBillableItem(billableItem);
    }

    Long personSessionId = (Long) SecurityUtils.getSubject().getSession()
            .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);

    // get the person and set it on the correspondence object
    try {
        // set the Person in context
        //Person person = studyService.getPerson(personSessionId);

        // set the Study in context
        Long studyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);
        Study study = iArkCommonService.getStudy(studyId);
        LinkSubjectStudy lss = studyService.getSubjectLinkedToStudy(personSessionId, study);
        containerForm.getModelObject().getCorrespondence().setLss(lss);
        //containerForm.getModelObject().getCorrespondence().setStudy(study);

        if (containerForm.getModelObject().getCorrespondence().getId() == null) {
            // store correspondence file attachment
            if (fileUploadField != null && fileUploadField.getFileUpload() != null) {
                FileUpload fileUpload = fileUploadField.getFileUpload();

                byte[] byteArray = fileUpload.getMD5();
                String checksum = getHex(byteArray);

                containerForm.getModelObject().getCorrespondence().setAttachmentPayload(fileUpload.getBytes());
                containerForm.getModelObject().getCorrespondence()
                        .setAttachmentFilename(fileUpload.getClientFileName());
                containerForm.getModelObject().getCorrespondence().setAttachmentChecksum(checksum);
            }

            // save
            studyService.create(containerForm.getModelObject().getCorrespondence());
            this.info("Correspondence was successfully added and linked to subject: " + lss.getSubjectUID());
            processErrors(target);
        } else {
            // store correspondence file attachment
            String checksum = null;
            if (fileUploadField != null && fileUploadField.getFileUpload() != null) {
                // retrieve file and store as Blob in database
                FileUpload fileUpload = fileUploadField.getFileUpload();

                byte[] byteArray = fileUpload.getMD5();
                checksum = getHex(byteArray);

                containerForm.getModelObject().getCorrespondence().setAttachmentPayload(fileUpload.getBytes());
                containerForm.getModelObject().getCorrespondence()
                        .setAttachmentFilename(fileUpload.getClientFileName());
                //               containerForm.getModelObject().getCorrespondence().setAttachementChecksum(checksum);
            }

            studyService.update(containerForm.getModelObject().getCorrespondence(), checksum);
            this.info("Correspondence was successfully updated and linked to subject: " + lss.getSubjectUID());
            processErrors(target);
        }
        // invoke backend to persist the correspondence

        workTrackingContainer.setVisible(false);
        onSavePostProcess(target);
    } catch (EntityNotFoundException ex) {
        ex.printStackTrace();
    } catch (ArkSystemException ex) {
        ex.printStackTrace();
    }
}

---

From source file:au.org.theark.study.web.component.managestudy.form.DetailForm.java

License:Open Source License

@Override
protected void onSave(Form<StudyModelVO> containerForm, AjaxRequestTarget target) {
    try {//ww  w  .j a va 2 s .  c o m
        String message = "Estimated Year of Completion must be greater than Date Of Application";

        boolean customValidationFlag = false;

        if (containerForm.getModelObject().getStudy().getEstimatedYearOfCompletion() != null) {
            customValidationFlag = validateEstYearOfComp(
                    containerForm.getModelObject().getStudy().getEstimatedYearOfCompletion(),
                    containerForm.getModelObject().getStudy().getDateOfApplication(), message, target);
        }

        // Store Study logo image
        if (fileUploadField != null && fileUploadField.getFileUpload() != null) {
            // Retrieve file and store as Blob in databasse
            FileUpload fileUpload = fileUploadField.getFileUpload();

            // Copy file to Blob object
            Blob payload = util.createBlob(fileUpload.getInputStream(), fileUpload.getSize());
            containerForm.getModelObject().getStudy().setStudyLogoBlob(payload);
            containerForm.getModelObject().getStudy().setFilename(fileUpload.getClientFileName());
        }

        if (subjectFileUploadField != null && subjectFileUploadField.getFileUpload() != null) {
            FileUpload subjectFileUpload = subjectFileUploadField.getFileUpload();
            Collection<SubjectVO> selectedSubjects = iArkCommonService.matchSubjectsFromInputFile(
                    subjectFileUpload, containerForm.getModelObject().getStudy().getParentStudy());
            // Link subjects in file to the selected study (where matched)
            containerForm.getModelObject().setSelectedSubjects(selectedSubjects);
        }

        if (containerForm.getModelObject().getStudy().getEstimatedYearOfCompletion() != null
                && customValidationFlag) {
            // If there was a value provided then upon successful validation proceed with save or update
            processSaveUpdate(containerForm.getModelObject(), target);
        } else if (containerForm.getModelObject().getStudy().getEstimatedYearOfCompletion() == null) {
            // If the value for estimate year of completion was not provided then we can proceed with save or update.
            processSaveUpdate(containerForm.getModelObject(), target);
        }
    } catch (EntityExistsException e) {
        this.error("The specified study already exists in the system.");
        log.error(e.getMessage());
    } catch (EntityCannotBeRemoved e) {
        this.error("The Study cannot be removed from the system.There are participants linked to the study");
        log.error(e.getMessage());
    } catch (IOException e) {
        this.error("There was an error transferring the specified Study logo image.");
        log.error(e.getMessage());
    } catch (ArkSystemException e) {
        this.error("A System exception has occurred. Please contact Support");
        log.error(e.getMessage());
    } catch (UnAuthorizedOperation e) {
        this.error("You (logged in user) is unauthorised to create/update or archive this study.");
        log.error(e.getMessage());
    } catch (CannotRemoveArkModuleException e) {
        this.error(
                "You cannot remove the modules as part of the update. There are System Users who are associated with this study and modules.");
        log.error(e.getMessage());
    }
}

---

• «
• 1
• 2
• 3
• 4
• 5
• 6
• 7
• 8
• 9
• 10
• 11
• »