List of usage examples for org.dom4j.io OutputFormat setTrimText
public void setTrimText(boolean trimText)
org.dom4j.Element#getTextTrim() . From source file:architecture.common.license.io.LicenseReader.java
License:Apache License
public String prettyPrintLicense(String decryptedLicenseKey) throws LicenseException { try {// w w w .jav a2s . c o m StringReader reader = new StringReader(decryptedLicenseKey); org.dom4j.Document doc = (new SAXReader()).read(reader); reader.close(); OutputFormat outputFormat = OutputFormat.createPrettyPrint(); outputFormat.setNewlines(true); outputFormat.setTrimText(false); StringWriter writer = new StringWriter(); XMLWriter xmlWriter = new XMLWriter(writer, outputFormat); xmlWriter.write(doc); writer.close(); return writer.toString(); } catch (Exception e) { throw new LicenseException(e); } }
From source file:au.com.acegi.xmlformat.XmlFormatPlugin.java
License:Apache License
private OutputFormat buildFormatter() { final OutputFormat fmt = createPrettyPrint(); fmt.setAttributeQuoteCharacter(attributeQuoteChar); fmt.setEncoding(encoding);/* ww w .j a va2s . c om*/ fmt.setExpandEmptyElements(expandEmptyElements); fmt.setIndentSize(indentSize); fmt.setLineSeparator(determineLineSeparator()); fmt.setNewLineAfterDeclaration(newLineAfterDeclaration); fmt.setNewLineAfterNTags(newLineAfterNTags); fmt.setNewlines(newlines); fmt.setOmitEncoding(omitEncoding); fmt.setPadText(padText); fmt.setSuppressDeclaration(suppressDeclaration); fmt.setTrimText(trimText); fmt.setXHTML(xhtml); return fmt; }
From source file:bio.pih.genoogle.interfaces.Console.java
public void execute(InputStreamReader isr, boolean echo) { BufferedReader lineReader = new BufferedReader(isr); boolean executePrev = false; String prev = null;// w w w.j a v a2s . c o m String line = null; Map<Parameter, Object> consoleParameters = SearchParams.getSearchParamsMap(); System.out.print("genoogle console> "); try { while (running && (executePrev || (line = lineReader.readLine()) != null)) { long begin = System.currentTimeMillis(); long end = -1; if (echo) { System.out.println(line); } try { line = line.trim(); if (line.length() == 0) { continue; } if (executePrev) { if (prev == null) { System.out.println("no previous commands."); executePrev = false; continue; } line = prev; System.out.println(line); executePrev = false; } String[] commands = line.split("[ \t]+"); if (commands[0].equals(SEARCH)) { if (commands.length >= 3) { String db = commands[1]; String queryFile = commands[2]; Map<Parameter, Object> searchParameters = Maps.newHashMap(); searchParameters.putAll(consoleParameters); for (int i = 4; i < commands.length; i++) { String command = commands[i]; String[] split = command.split("="); if (split.length != 2) { System.out.println(command + " is an invalid parameter."); } String paramName = split[0]; String paramValue = split[1]; Parameter p = Parameter.getParameterByName(paramName); if (p == null) { System.out.println(paramName + " is an invalid parameter name"); continue; } Object value = p.convertValue(paramValue); searchParameters.put(p, value); } if (new File(queryFile).exists()) { BufferedReader in = new BufferedReader(new FileReader(queryFile)); profileLogger.info("<" + line + ">"); List<SearchResults> results = genoogle.doBatchSyncSearch(in, db, searchParameters); end = System.currentTimeMillis(); long total = end - begin; profileLogger.info("</" + line + ":" + total + ">"); Document document = Output.genoogleOutputToXML(results); OutputFormat outformat = OutputFormat.createPrettyPrint(); outformat.setTrimText(false); outformat.setEncoding("UTF-8"); OutputStream os; if (commands.length >= 4) { String outputFile = commands[3]; os = new FileOutputStream(new File(outputFile + ".xml")); } else { os = System.out; } XMLWriter writer = new XMLWriter(os, outformat); writer.write(document); writer.flush(); } else { System.err.println("query file: " + queryFile + " does not exist."); } } else { System.out.println("SEARCH DB QUERY_FILE OUTPUT_FILE"); } } else if (commands[0].equals(GC)) { System.gc(); } else if (commands[0].equals(LIST)) { for (AbstractSequenceDataBank db : genoogle.getDatabanks()) { System.out.println(db.getName() + " - " + db.getAlphabet().getName() + "(" + db.getClass().getName() + ")"); } } else if (commands[0].equals(DEFAULT)) { System.out.println(genoogle.getDefaultDatabank()); } else if (commands[0].equals(PARAMETERS)) { for (Entry<Parameter, Object> entry : consoleParameters.entrySet()) { System.out.println(entry.getKey().getName() + "=" + entry.getValue()); } } else if (commands[0].equals(SET)) { String[] split = commands[1].split("="); if (split.length != 2) { System.out.println(commands[1] + " is invalid set parameters option."); } String paramName = split[0]; String paramValue = split[1]; Parameter p = Parameter.getParameterByName(paramName); if (p == null) { System.out.println(paramName + " is an invalid parameter name"); continue; } Object value = p.convertValue(paramValue); consoleParameters.put(p, value); System.out.println(paramName + " is " + paramValue); } else if (commands[0].equals(SEQ)) { if (commands.length != 3) { System.out.println("SEQ database id"); continue; } String db = commands[1]; int id = Integer.parseInt(commands[2]); String seq = genoogle.getSequence(db, id); System.out.println(seq); } else if (commands[0].equals(PREV) || commands[0].equals("p")) { executePrev = true; continue; } else if (commands[0].endsWith(BATCH)) { if (commands.length != 2) { System.out.println("BATCH <batchfile>"); continue; } File f = new File(commands[1]); execute(new InputStreamReader(new FileInputStream(f)), true); end = System.currentTimeMillis(); } else if (commands[0].equals(EXIT)) { genoogle.finish(); } else if (commands[0].equals(HELP)) { System.out.println("Commands:"); System.out.println( "search <data bank> <input file> <output file> <parameters>: does the search"); System.out.println("list : lists the data banks."); System.out.println("parameters : shows the search parameters and their values."); System.out.println("set <parameter>=<value> : set the parameters value."); System.out.println("gc : executes the java garbage collection."); System.out.println("prev or l: executes the last command."); System.out.println("batch <batch file> : runs the commands listed in this batch file."); System.out.println("help: this help."); System.out.println("exit : finish Genoogle execution."); System.out.println(); System.out.println("Search Parameters:"); System.out.println( "MaxSubSequenceDistance : maximum index entries distance to be considered in the same HSPs."); System.out.println("SequencesExtendDropoff : drop off for sequence extension."); System.out.println("MaxHitsResults : maximum quantity of returned results."); System.out.println("QuerySplitQuantity : how many slices the input query will be divided."); System.out.println("MinQuerySliceLength : minimum size of each input query slice."); System.out.println( "MaxThreadsIndexSearch : quantity of threads which will be used to index search."); System.out.println( "MaxThreadsExtendAlign : quantity of threads which will be used to extend and align the HSPs."); System.out.println("MatchScore : score when has a match at the alignment."); System.out.println("MismatchScore : score when has a mismatch at the alignment."); } else { System.err.println("Unknow command: " + commands[0]); continue; } prev = line; System.out.print("genoogle console> "); } catch (IndexOutOfBoundsException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (UnsupportedEncodingException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (FileNotFoundException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (ParseException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (IOException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (NoSuchElementException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (UnknowDataBankException e) { logger.error(e.getStackTrace(), e); continue; } catch (InterruptedException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (ExecutionException e) { logger.fatal(e.getStackTrace(), e); continue; } catch (IllegalSymbolException e) { logger.fatal(e.getStackTrace(), e); continue; } } } catch (IOException e) { logger.fatal(e.getStackTrace(), e); return; } }
From source file:bio.pih.genoogle.interfaces.WebServices.java
private String xmlToString(Document doc) { ByteArrayOutputStream outputStream = new ByteArrayOutputStream(); OutputFormat outformat = OutputFormat.createPrettyPrint(); outformat.setTrimText(false); XMLWriter writer = null;/*from w ww .j av a 2s.c om*/ try { writer = new XMLWriter(outputStream, outformat); } catch (UnsupportedEncodingException e) { logger.fatal(e); return e.getLocalizedMessage(); } try { writer.write(doc); } catch (IOException e) { logger.fatal(e); return e.getLocalizedMessage(); } try { return outputStream.toString("UTF-8"); } catch (UnsupportedEncodingException e) { logger.fatal(e); return e.getLocalizedMessage(); } }
From source file:com.blocks.framework.utils.date.XMLDom4jUtils.java
License:Open Source License
/** * XMLDocumentjava.io.Writer?/*from w ww . j a v a 2 s .com*/ * * * * ??Schema * * * * @param document * XML * @param outStream * * * * * @param encoding * ? * @throws XMLDocException * * * * @throws BaseException * */ public static void toXML(Document document, java.io.OutputStream outStream, String encoding) throws BaseException { // OutputFormat outformat = new OutputFormat(); outformat.setIndentSize(0); outformat.setNewlines(true); outformat.setTrimText(true); // OutputFormat outformat = OutputFormat.createPrettyPrint(); if (encoding == null || encoding.trim().equals("")) { encoding = DEFAULT_ENCODING; } // ? outformat.setEncoding(encoding); XMLWriter xmlWriter = null; try { xmlWriter = new XMLWriter(new OutputStreamWriter(outStream), outformat); xmlWriter.write(document); xmlWriter.flush(); } catch (IOException ex) { throw new BaseException("UTIL-0001", ex); } finally { if (xmlWriter != null) { try { xmlWriter.close(); } catch (IOException ex) { } } } }
From source file:com.blocks.framework.utils.date.XMLDom4jUtils.java
License:Open Source License
public static void element2XML(Element element, java.io.OutputStream outStream, String encoding) throws BaseException { ///* ww w . j a v a 2 s . com*/ OutputFormat outformat = new OutputFormat(); outformat.setIndentSize(0); outformat.setNewlines(false); outformat.setTrimText(true); // OutputFormat outformat = OutputFormat.createPrettyPrint(); if (encoding == null || encoding.trim().equals("")) { encoding = DEFAULT_ENCODING; } // ? outformat.setEncoding(encoding); XMLWriter xmlWriter = null; try { xmlWriter = new XMLWriter(new OutputStreamWriter(outStream), outformat); xmlWriter.write(element); xmlWriter.flush(); } catch (IOException ex) { throw new BaseException("UTIL-0001", ex); } finally { if (xmlWriter != null) { try { xmlWriter.close(); } catch (IOException ex) { } } } }
From source file:com.jswiff.xml.XMLWriter.java
License:Open Source License
/** * Writes the XML document generated from the SWF to a stream. If the * <code>format</code> flag is set, the output XML is formatted to make it * more readable.//www . j av a2 s. c om * * @param stream the target stream * @param format specifies whether to format the output XML * * @throws IOException if an I/O error occured */ public void write(OutputStream stream, boolean format) throws IOException { if (format) { OutputFormat formatter = OutputFormat.createPrettyPrint(); formatter.setNewLineAfterDeclaration(false); formatter.setTrimText(false); org.dom4j.io.XMLWriter writer = new org.dom4j.io.XMLWriter(stream, formatter); writer.write(xmlDocument); } else { org.dom4j.io.XMLWriter writer = new org.dom4j.io.XMLWriter(stream); writer.write(xmlDocument); } }
From source file:com.jswiff.xml.XMLWriter.java
License:Open Source License
/** * Writes the XML document generated from the SWF to a writer. If the * <code>format</code> flag is set, the output XML is formatted to make it * more readable./*from w w w . j a v a 2 s . com*/ * * @param writer the target writer * @param format specifies whether to format the output XML * * @throws IOException if an I/O error occured */ public void write(Writer writer, boolean format) throws IOException { if (format) { OutputFormat formatter = OutputFormat.createPrettyPrint(); formatter.setNewLineAfterDeclaration(false); formatter.setTrimText(false); org.dom4j.io.XMLWriter xmlWriter = new org.dom4j.io.XMLWriter(writer, formatter); xmlWriter.write(xmlDocument); } else { org.dom4j.io.XMLWriter xmlWriter = new org.dom4j.io.XMLWriter(writer); xmlWriter.write(xmlDocument); } }
From source file:com.liferay.petra.xml.Dom4jUtil.java
License:Open Source License
public static String toString(Node node, String indent, boolean expandEmptyElements, boolean trimText) throws IOException { UnsyncByteArrayOutputStream unsyncByteArrayOutputStream = new UnsyncByteArrayOutputStream(); OutputFormat outputFormat = OutputFormat.createPrettyPrint(); outputFormat.setExpandEmptyElements(expandEmptyElements); outputFormat.setIndent(indent);//from ww w . java2 s. c o m outputFormat.setLineSeparator(StringPool.NEW_LINE); outputFormat.setTrimText(trimText); XMLWriter xmlWriter = new XMLWriter(unsyncByteArrayOutputStream, outputFormat); xmlWriter.write(node); String content = unsyncByteArrayOutputStream.toString(StringPool.UTF8); // LEP-4257 //content = StringUtil.replace(content, "\n\n\n", "\n\n"); if (content.endsWith("\n\n")) { content = content.substring(0, content.length() - 2); } if (content.endsWith("\n")) { content = content.substring(0, content.length() - 1); } while (content.contains(" \n")) { content = StringUtil.replace(content, " \n", "\n"); } if (content.startsWith("<?xml version=\"1.0\" encoding=\"UTF-8\"?>")) { content = StringUtil.replaceFirst(content, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>", "<?xml version=\"1.0\"?>"); } return content; }
From source file:com.zimbra.cs.dav.client.DavRequest.java
License:Open Source License
public String getRequestMessageString() throws IOException { if (mDoc != null) { OutputFormat format = OutputFormat.createPrettyPrint(); format.setTrimText(false); format.setOmitEncoding(false);/*from w w w . j a va 2s.c o m*/ ByteArrayOutputStream out = new ByteArrayOutputStream(); XMLWriter writer = new XMLWriter(out, format); writer.write(mDoc); return new String(out.toByteArray(), "UTF-8"); } return ""; }