Example usage for org.jdom2.output Format getPrettyFormat

List of usage examples for org.jdom2.output Format getPrettyFormat

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Introduction

In this page you can find the example usage for org.jdom2.output Format getPrettyFormat.

Prototype

public static Format getPrettyFormat()

Source Link

Document

Returns a new Format object that performs whitespace beautification with 2-space indents, uses the UTF-8 encoding, doesn't expand empty elements, includes the declaration and encoding, and uses the default entity escape strategy.

Usage

From source file:org.plasma.provisioning.cli.UMLTool.java

License:Open Source License

/**
 * Command line entry point. // w w w  . ja v a  2  s  .c om
 * <p></p>
* <b>Usage:</b> java org.plasma.provisioning.cli.UMLTool  
* [source &lt;rdb | xsd, ...&gt;] 
* [dialect &lt;oracle | mysql, ...&gt;] 
* [platform &lt;papyrus | magicdraw, ...&gt;] 
* [dest-file] [namespace1, namespace2, ...]  
* [schema1, schema2, ...] <b>*</b>
* <p></p> 
* <b>Where:</b> 
* <li><b>-source</b> is one of [rdb | xsd, ...]. 
* The <i>rdb</i> source interrogates one or more database schemas, using
* vendor specific system tables, and generates a UML model for the given UML editing <i>platform</i> 
* which captures the physical attributes of the database including all tables, 
* columns, constraints, sequences and comments. Check constraints where the
* search condition involves limiting the associated property to a list of values
* are captured and used to produce annotated UML enumerations which 
* are automatically linked as UML enumeration constraints to the 
* source property.</li>
* <li><b>dialect</b> is one of [oracle | mysql, ...] and the specific database product version is determined at runtime</li>
* <li><b>platform</b> is one of [papyrus | magicdraw, ...]</li>
* <li><b>dest-file</b> is the file name for the target artifact</li> 
* <li><b>namespace1, namespace2, ...</b> is the comma separated set of namespace URIs used to annotate the UML package(s). If more than one 
* schema is used, each schema name is used as a suffix. If no namespace-URI is present
* a namespace URI based on the destination file name is constructed.</li> 
* <li><b>schema1, schema2, ...</b> is a set of source RDB schemas separated by commas</li> 
 */
public static void main(String[] args) throws JAXBException, SAXException, IOException {
    if (args.length < 1) {
        printUsage();
        return;
    }
    UMLToolSource source = null;
    try {
        String sourceArg = args[0];
        if (sourceArg.startsWith("-"))
            sourceArg = sourceArg.substring(1);
        source = UMLToolSource.valueOf(sourceArg);
    } catch (IllegalArgumentException e) {
        throw new IllegalArgumentException(
                "'" + args[0] + "' - expected one of [" + UMLToolSource.asString() + "]");
    }
    RDBDialect dialect = null;

    switch (source) {
    case rdb:
        try {
            String dialectArg = args[1];
            if (dialectArg.startsWith("-"))
                dialectArg = dialectArg.substring(1);
            dialect = RDBDialect.valueOf(dialectArg);
        } catch (IllegalArgumentException e) {
            printUsage();
            throw new IllegalArgumentException(
                    "'" + args[1] + "' - expected one of [" + RDBDialect.asString() + "]");
        }
        File dest = new File(args[2]);
        if (!dest.getParentFile().exists())
            dest.getParentFile().mkdirs();
        break;
    case xsd:
    default:
        printUsage();
        break;
    }

    UMLDialect platform = UMLDialect.papyrus;
    String[] schemaNames = null;
    String[] namespaces = null;
    if (args.length == 6) {
        namespaces = args[4].split(",");
        schemaNames = args[5].split(",");
        if (namespaces.length != schemaNames.length)
            throw new RDBException(
                    "expected 'schemaNames' and 'namespaces' arguments with equal number of comma seperated  values");

        try {
            String platformArg = args[3];
            if (platformArg.startsWith("-"))
                platformArg = platformArg.substring(1);
            platform = UMLDialect.valueOf(platformArg);
        } catch (IllegalArgumentException e) {
            throw new IllegalArgumentException(
                    "'" + args[3] + "' - expected one of [" + UMLDialect.asString() + "]");
        }
    } else if (args.length == 5) {
        namespaces = args[3].split(",");
        schemaNames = args[4].split(",");
        if (namespaces.length != schemaNames.length)
            throw new RDBException(
                    "expected 'schemaNames' and 'namespaces' arguments with equal number of comma seperated  values");

    } else {
        schemaNames = args[3].split(",");
        namespaces = new String[schemaNames.length];
        for (int i = 0; i < schemaNames.length; i++)
            namespaces[i] = "http://" + schemaNames[i];
    }

    Model model = (new RDBReader()).read(dialect, schemaNames, namespaces);

    File dest = new File(args[2]);
    if (!dest.getParentFile().exists())
        dest.getParentFile().mkdirs();

    if (log.isDebugEnabled()) {
        ProvisioningModelDataBinding provBinding = new ProvisioningModelDataBinding(
                new DefaultValidationEventHandler());
        String xml = provBinding.marshal(model);
        File outFile = new File(dest.getParentFile(), "technical-model.xml");
        OutputStream stream = new FileOutputStream(outFile);
        stream.write(xml.getBytes());
        stream.flush();
        stream.close();
        log.debug("wrote merged model file to: " + outFile.getAbsoluteFile());
        log.debug("reading merged model file: " + outFile.getAbsoluteFile());
        model = (Model) provBinding.unmarshal(new FileInputStream(outFile));
    }

    ModelAdapter helper = new ModelAdapter(model);
    UMLModelAssembler umlAssembler = null;
    switch (platform) {
    case papyrus:
        umlAssembler = new PapyrusModelAssembler(model, namespaces[0], "tns");
        break;
    case magicdraw:
        umlAssembler = new MDModelAssembler(model, namespaces[0], "tns");
        break;
    }
    umlAssembler.setDerivePackageNamesFromURIs(false);
    Document document = umlAssembler.getDocument();

    log.info("marshaling XMI model to " + dest.getAbsolutePath());
    try {
        FileOutputStream os = new FileOutputStream(dest);
        XMLOutputter outputter = new XMLOutputter();
        outputter.setFormat(Format.getPrettyFormat());
        outputter.output(document, os);
    } catch (FileNotFoundException e) {
        throw new ProvisioningException(e);
    } catch (IOException e) {
        throw new ProvisioningException(e);
    }

}

From source file:org.polago.deployconf.DeploymentWriter.java

License:Open Source License

/**
 * Write the given DeploymentConfig to persistent storage.
 *
 * @param deploymentConfig the DeploymentConfig to persist
 * @throws IOException indicating IO problems
 *//*from  w  ww.  j  ava2 s . c o  m*/
public void persist(DeploymentConfig deploymentConfig) throws IOException {
    Format format = Format.getPrettyFormat();
    format.setLineSeparator(LineSeparator.UNIX);
    format.setExpandEmptyElements(true);
    XMLOutputter outputter = new XMLOutputter(format);

    Element root = new Element(DOM_ROOT);
    String name = deploymentConfig.getName();
    if (name != null) {
        root.setAttribute(ATTR_NAME, name);
    }
    Document document = new Document();
    document.setRootElement(root);

    for (Task task : deploymentConfig.getTasks()) {
        Element node = new Element(task.getSerializedName());
        root.addContent(node);
        task.serialize(node, groupManager);
    }

    outputter.output(document, outputStream);
}

From source file:org.rascalmpl.library.lang.xml.DOM.java

License:Open Source License

public IString xmlPretty(IConstructor node) throws IOException {
    return xmlToString(node, Format.getPrettyFormat());
}

From source file:org.rhwlab.ace3d.Ace3D_Frame.java

private void saveSession(File xml) throws Exception {

    Element root = new Element("Ace3DSession");
    if (bhc != null) {
        root.addContent(bhc.toXML());/*from  w  ww .  j  a  va  2  s. c om*/
    }

    root.addContent(imagedEmbryo.toXML());

    Element dsProps = new Element("DataSets");
    for (String ds : dataSetProperties.keySet()) {
        DataSetProperties props = dataSetProperties.get(ds);
        Element dsEle = props.toXML();
        dsEle.setAttribute("Name", ds);
        dsProps.addContent(dsEle);
    }
    root.addContent(dsProps);

    OutputStream stream = new FileOutputStream(xml);
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);
    stream.close();
    props.setProperty("Session", xml.getPath());
    sessionXML = xml;

}

From source file:org.rhwlab.BHC.BHCTree.java

public void saveAsXML(String file) throws Exception {
    OutputStream stream = new FileOutputStream(file);
    Element root = new Element("BHCTrees");
    root.setAttribute("alpha", Double.toString(alpha));

    StringBuilder builder = new StringBuilder();
    builder.append("(");
    for (int i = 0; i < s.length; ++i) {
        builder.append(s[i]);// w  w w.  ja v  a2 s. com
        builder.append(" ");
    }
    builder.append(")");
    root.setAttribute("s", builder.toString());

    root.setAttribute("nu", Integer.toString(nu));
    builder = new StringBuilder();
    builder.append("(");
    for (int d = 0; d < mu.length; ++d) {
        builder.append(mu[d]);
        builder.append(" ");
    }
    builder.append(")");
    root.setAttribute("mu", builder.toString());

    for (Node node : roots) {
        ((NodeBase) node).saveAsTreeXML(time, root);
        TreeSet<Double> posts = new TreeSet<>();
        ((NodeBase) node).allPosteriors(posts);
        int aoshdfuihs = 0;
    }
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);
    stream.close();
}

From source file:org.rhwlab.BHC.BHCTree.java

public static void saveXML(String file, Element root) throws Exception {
    File f = new File(file);
    File outFile = new File(f.getParent(), f.getName());
    OutputStream stream = new FileOutputStream(outFile);
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);/*from   www  . ja va 2s  .  c om*/
    stream.close();
}

From source file:org.rhwlab.BHC.NodeBase.java

static public void saveAsTreeListXML(int time, String file, List<Node> nodes) throws Exception {
    OutputStream stream = new FileOutputStream(file);
    Element root = new Element("BHCTrees");
    for (Node node : nodes) {
        ((NodeBase) node).saveAsTreeXML(time, root);
    }/*from   ww w  .ja v  a 2 s.co m*/
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);
    stream.close();
}

From source file:org.rhwlab.BHCnotused.Cluster.java

static void saveClusterListAsXML(String file, List<Cluster> clusters, double threshold) throws Exception {
    OutputStream stream = new FileOutputStream(file);
    Element root = new Element("BHCClusterList");
    int id = 1;/*from w w w .  j  a  va  2 s . com*/
    for (Cluster cl : clusters) {
        id = cl.saveAsXML(root, threshold, id) + 1;
    }
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);
    stream.close();
}

From source file:org.rhwlab.dispim.datasource.ClusteredDataSource.java

public void saveAsXML(String file) throws Exception {
    OutputStream stream = new FileOutputStream(file);
    Element root = new Element("KMeansClustering");
    root.setAttribute("NumberOfClusters", Integer.toString(centers.length));
    root.setAttribute("Partitions", Integer.toString(partitions));
    root.setAttribute("Dimensions", Integer.toString(D));
    root.setAttribute("NumberOfPoints", Long.toString(this.getN()));
    root.setAttribute("SegmentationThreshold", Double.toString(segThresh));
    root.setAttribute("MinimumIntensity", Integer.toString(minIntensity));
    root.setAttribute("MaximumIntensity", Integer.toString(maxIntensity));
    for (int c = 0; c < gaussians.size(); ++c) {
        GaussianComponent comp = gaussians.get(c);
        Element ele = new Element("Cluster");

        double[] center = comp.getMean().toArray();
        StringBuilder builder = new StringBuilder();
        for (int i = 0; i < center.length; ++i) {
            if (i > 0) {
                builder.append(" ");
            }//from   w w w.j a  va 2  s .com
            builder.append(center[i]);
        }
        ele.setAttribute("Center", builder.toString());

        ele.setAttribute("PointCount", Integer.toString(comp.getN()));
        ele.setAttribute("MinimumIntensity", Integer.toString(this.clusterMinIntensity[c]));
        ele.setAttribute("MaximumIntensity", Integer.toString(this.clusterMaxIntensity[c]));
        double avgAdjusted = 0.0;
        for (int n : comp.getIndexes()) {
            Element pointEle = new Element("Point");
            double[] point = this.X[n].coords.toArray();
            int intensity = this.X[n].intensity;
            pointEle.setAttribute("Intensity", Integer.toString(intensity));
            double adj = this.X[n].getAdjusted();
            avgAdjusted = avgAdjusted + adj;
            pointEle.setAttribute("Adjusted", Double.toString(adj));
            builder = new StringBuilder();
            for (int d = 0; d < point.length; ++d) {
                if (d > 0) {
                    builder.append(" ");
                }
                builder.append(point[d]);
            }
            pointEle.addContent(builder.toString());
            ele.addContent(pointEle);
        }
        ele.setAttribute("AvgAdjusted", Double.toString(avgAdjusted / comp.indexes.size()));
        root.addContent(ele);
    }
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);
    stream.close();
}

From source file:org.rhwlab.variationalbayesian.GaussianMixture.java

public void saveAsXML(String file) throws Exception {
    FileOutputStream stream = new FileOutputStream(file, false);
    Element root = new Element("document");
    for (int k = 0; k < K; ++k) {
        if (N[k] > 1) {
            Element gmm = new Element("GaussianMixtureModel");
            gmm.setAttribute("id", String.format("%d", k));
            gmm.setAttribute("parent", "-1");
            gmm.setAttribute("N", String.format("%f", N[k]));
            gmm.setAttribute("detW", String.format("%e", detW[k]));
            gmm.setAttribute("lnLamdbaTilde", String.format("%f", this.lnLambdaTilde[k]));
            gmm.setAttribute("nu", String.format("%f", nu[k]));
            gmm.setAttribute("lnPi", String.format("%f", lnPi[k]));
            StringBuilder builder = new StringBuilder();
            for (int d = 0; d < X.getD(); ++d) {
                if (d > 0) {
                    builder.append(" ");
                }//from   ww  w .  ja v  a2  s .  co  m
                builder.append(m[k].getEntry(d));

            }
            gmm.setAttribute("m", builder.toString());

            //               double c = Math.pow(Math.exp(this.lnLambdaTilde[k])/this.detW[k],1.0/X.getD());
            builder = new StringBuilder();
            for (int row = 0; row < X.getD(); ++row) {
                for (int col = 0; col < X.getD(); ++col) {
                    if (row > 0 || col > 0) {
                        builder.append(" ");
                    }
                    builder.append(W[k].getEntry(row, col));
                }
            }
            gmm.setAttribute("W", builder.toString());

            builder = new StringBuilder();
            for (int row = 0; row < X.getD(); ++row) {
                for (int col = 0; col < X.getD(); ++col) {
                    if (row > 0 || col > 0) {
                        builder.append(" ");
                    }
                    builder.append(W[k].getEntry(row, col));
                }
            }
            gmm.setAttribute("W", builder.toString());

            LUDecomposition cd = new LUDecomposition(S[k]);
            RealMatrix Sinv = cd.getSolver().getInverse();
            builder = new StringBuilder();
            for (int row = 0; row < X.getD(); ++row) {
                for (int col = 0; col < X.getD(); ++col) {
                    if (row > 0 || col > 0) {
                        builder.append(" ");
                    }
                    builder.append(Sinv.getEntry(row, col));
                }
            }
            gmm.setAttribute("Sinv", builder.toString());
            root.addContent(gmm);

        }
    }
    XMLOutputter out = new XMLOutputter(Format.getPrettyFormat());
    out.output(root, stream);

}