Example usage for org.jdom2.output XMLOutputter outputString

List of usage examples for org.jdom2.output XMLOutputter outputString

  1. HOME
  2. Java
  3. org.jdom2
  4. org.jdom2.output.*
  5. XMLOutputter
  6. outputString

Introduction

In this page you can find the example usage for org.jdom2.output XMLOutputter outputString.

Prototype

public final String outputString(EntityRef entity)

Source Link

Document

Return a string representing an EntityRef .

Usage

From source file:org.graphwalker.StatisticsManager.java

License:Open Source License

public String getFullProgressXml() {
    XMLOutputter outputter = new XMLOutputter();
    return outputter.outputString(this.progress);
}

From source file:org.helm.notation2.MonomerFactory.java

License:Open Source License

private static String buildMonomerDbXMLFromCache(MonomerCache cache) throws MonomerException {
    XMLOutputter outputer = new XMLOutputter(Format.getPrettyFormat());

    StringBuilder sb = new StringBuilder();
    sb.append("<?xml version=\"1.0\" encoding=\"UTF-8\"?>" + System.getProperty("line.separator")
            + "<MonomerDB xmlns=\"lmr\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\">"
            + System.getProperty("line.separator"));

    Map<String, Map<String, Monomer>> mDB = cache.getMonomerDB();
    Element polymerListElement = new Element(POLYMER_LIST_ELEMENT);
    Set<String> polymerTypeSet = mDB.keySet();
    for (Iterator i = polymerTypeSet.iterator(); i.hasNext();) {
        String polymerType = (String) i.next();
        Element polymerElement = new Element(POLYMER_ELEMENT);
        Attribute att = new Attribute(POLYMER_TYPE_ATTRIBUTE, polymerType);
        polymerElement.setAttribute(att);
        polymerListElement.getChildren().add(polymerElement);

        Map<String, Monomer> monomerMap = mDB.get(polymerType);
        Set<String> monomerSet = monomerMap.keySet();

        for (Iterator it = monomerSet.iterator(); it.hasNext();) {
            String monomerID = (String) it.next();
            Monomer m = monomerMap.get(monomerID);
            Element monomerElement = MonomerParser.getMonomerElement(m);
            polymerElement.getChildren().add(monomerElement);
        }/*from w w  w.j av  a  2s . co  m*/
    }
    String polymerListString = outputer.outputString(polymerListElement);
    sb.append(polymerListString + System.getProperty("line.separator"));

    Map<String, Attachment> aDB = cache.getAttachmentDB();
    Element attachmentListElement = new Element(ATTACHMENT_LIST_ELEMENT);
    Set<String> attachmentSet = aDB.keySet();
    for (Iterator itr = attachmentSet.iterator(); itr.hasNext();) {
        String attachmentID = (String) itr.next();
        Attachment attachment = aDB.get(attachmentID);
        Element attachmentElement = MonomerParser.getAttachementElement(attachment);
        attachmentListElement.getChildren().add(attachmentElement);
    }
    String attachmentListString = outputer.outputString(attachmentListElement);
    sb.append(attachmentListString);

    sb.append(System.getProperty("line.separator") + "</MonomerDB>" + System.getProperty("line.separator"));

    return sb.toString();
}

From source file:org.helm.notation2.tools.NucleotideParser.java

License:Open Source License

public static String getNucleotideTemplatesXML(Map<String, Map<String, String>> templates) {
    XMLOutputter outputer = new XMLOutputter(Format.getPrettyFormat());

    StringBuilder sb = new StringBuilder();
    sb.append(/*from   www  .jav  a2  s.c  om*/
            "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<NUCLEOTIDE_TEMPLATES xsi:schemaLocation=\"lmr NucleotideTemplateSchema.xsd\" xmlns=\"lmr\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\">\n");

    Set<String> templateSet = templates.keySet();
    for (Iterator i = templateSet.iterator(); i.hasNext();) {
        String template = (String) i.next();
        Element templateElement = new Element(TEMPLATE_ELEMENT);
        Attribute att = new Attribute(TEMPLATE_NOTATION_SOURCE_ATTRIBUTE, template);
        templateElement.setAttribute(att);

        Map<String, String> nucMap = templates.get(template);
        Set<String> nucleotideSet = nucMap.keySet();

        for (Iterator it = nucleotideSet.iterator(); it.hasNext();) {
            Element nucleotideElement = new Element(NUCLEOTIDE_ELEMENT);
            templateElement.getChildren().add(nucleotideElement);

            String symbol = (String) it.next();
            Element symbolElement = new Element(NUCLEOTIDE_SYMBOL_ELEMENT);
            symbolElement.setText(symbol);
            nucleotideElement.getChildren().add(symbolElement);

            String notation = nucMap.get(symbol);
            Element notationElement = new Element(NUCLEOTIDE_MONOMER_NOTATION_ELEMENT);
            notationElement.setText(notation);
            nucleotideElement.getChildren().add(notationElement);
        }

        String templateString = outputer.outputString(templateElement);
        sb.append(templateString);
    }

    sb.append("\n</NUCLEOTIDE_TEMPLATES>");

    return sb.toString();
}

From source file:org.helm.notation2.tools.xHelmNotationExporter.java

License:Open Source License

/**
 * method to get xhelm for the helm2 notation with the new functionality
 *
 * @param helm2notation, HELM2Notation object
 * @return xhelm/* w  w  w  .  j ava  2 s  .c o m*/
 * @throws MonomerException
 * @throws JDOMException
 * @throws IOException
 * @throws ChemistryException
 */
public static String getXHELM2(HELM2Notation helm2notation)
        throws MonomerException, IOException, JDOMException, ChemistryException {
    set = new HashSet<Monomer>();
    Element root = new Element(xHelmNotationExporter.XHELM_ELEMENT);

    Document doc = new Document(root);

    Element helmElement = new Element(xHelmNotationExporter.HELM_NOTATION_ELEMENT);
    helmElement.setText(helm2notation.toHELM2());

    root.addContent(helmElement);

    Element monomerListElement = new Element(xHelmNotationExporter.MONOMER_LIST_ELEMENT);

    /* save all adhocMonomers */
    for (MonomerNotation monomernotation : MethodsMonomerUtils
            .getListOfMonomerNotation(helm2notation.getListOfPolymers())) {
        /* get all elements of an rna */
        if (monomernotation instanceof MonomerNotationUnitRNA) {
            for (MonomerNotationUnit unit : ((MonomerNotationUnitRNA) monomernotation).getContents()) {
                addAdHocMonomer(unit);
            }
        } else {
            addAdHocMonomer(monomernotation);

        }

    }
    /* give the adhocMonomer's information */
    for (Monomer distinctmonomer : set) {
        Element monomerElement = MonomerParser.getMonomerElement(distinctmonomer);
        monomerListElement.getChildren().add(monomerElement);
    }

    root.addContent(monomerListElement);
    XMLOutputter xmlOutput = new XMLOutputter();
    // display nice
    xmlOutput.setFormat(Format.getPrettyFormat());
    return xmlOutput.outputString(doc);
}

From source file:org.helm.notation2.tools.xHelmNotationExporter.java

License:Open Source License

/**
 * method to get xhelm for the helm notation, only if it was possible to
 * convert the helm in the old format//from w w  w . java  2s  . c om
 *
 * @param helm2notation, HELM2Notation object
 * @return xhelm
 * @throws MonomerException
 * @throws HELM1FormatException
 * @throws JDOMException
 * @throws IOException
 * @throws NotationException
 * @throws CTKException
 * @throws ValidationException
 * @throws ChemistryException if the Chemistry Engine can not be initialized
 */
public static String getXHELM(HELM2Notation helm2notation) throws MonomerException, HELM1FormatException,
        IOException, JDOMException, NotationException, CTKException, ValidationException, ChemistryException {
    set = new HashSet<Monomer>();
    Element root = new Element(xHelmNotationExporter.XHELM_ELEMENT);

    Document doc = new Document(root);

    Element helmElement = new Element(xHelmNotationExporter.HELM_NOTATION_ELEMENT);
    helmElement.setText(HELM1Utils.getStandard(helm2notation));

    root.addContent(helmElement);

    Element monomerListElement = new Element(xHelmNotationExporter.MONOMER_LIST_ELEMENT);

    /* save all adhocMonomers in the set */
    for (MonomerNotation monomernotation : MethodsMonomerUtils
            .getListOfMonomerNotation(helm2notation.getListOfPolymers())) {
        /* get all elements of an rna */
        if (monomernotation instanceof MonomerNotationUnitRNA) {
            for (MonomerNotationUnit unit : ((MonomerNotationUnitRNA) monomernotation).getContents()) {
                addAdHocMonomer(unit);
            }
        } else {
            addAdHocMonomer(monomernotation);
        }
    }

    /* give adhoc monomer's information */
    for (Monomer distinctmonomer : set) {
        Element monomerElement = MonomerParser.getMonomerElement(distinctmonomer);
        monomerListElement.getChildren().add(monomerElement);
    }

    root.addContent(monomerListElement);

    XMLOutputter xmlOutput = new XMLOutputter();
    // display nice
    xmlOutput.setFormat(Format.getPrettyFormat());

    return xmlOutput.outputString(doc);

}

From source file:org.isisaddons.module.docx.fixture.dom.templates.CustomerConfirmation.java

License:Apache License

@Action(semantics = SemanticsOf.SAFE, restrictTo = RestrictTo.PROTOTYPING)
@ActionLayout(contributed = Contributed.AS_ACTION)
@MemberOrder(sequence = "11")
public Clob downloadCustomerConfirmationInputHtml(final Order order)
        throws IOException, JDOMException, MergeException {

    final Document orderAsHtmlJdomDoc = asInputDocument(order);

    final XMLOutputter xmlOutput = new XMLOutputter();
    xmlOutput.setFormat(Format.getPrettyFormat());

    final String html = xmlOutput.outputString(orderAsHtmlJdomDoc);

    final String clobName = "customerConfirmation-" + order.getNumber() + ".html";
    final String clobMimeType = "text/html";
    final String clobBytes = html;

    return new Clob(clobName, clobMimeType, clobBytes);
}

From source file:org.jls.toolbox.util.xml.XMLParser.java

License:Open Source License

/**
 * Permet  partir d'un document XML gnr par JDom de rcuprer la chane
 * formate en XML.//from   w  w w. j  a v a  2s.c o  m
 * 
 * @param xmlDocument
 *            Fichier XML gnr avec JDom.
 * @return Chane formate en XML.
 */
public static String getStream(Document xmlDocument) {
    Format format = Format.getPrettyFormat();
    format.setIndent("\t");
    XMLOutputter output = new XMLOutputter(format);
    return output.outputString(xmlDocument);
}

From source file:org.jumpmind.metl.core.runtime.component.AbstractXMLComponentRuntime.java

License:Open Source License

protected String toXML(Element element) {
    XMLOutputter xmlOutputter = new XMLOutputter();
    return xmlOutputter.outputString(element);
}

From source file:org.jumpmind.metl.core.runtime.component.XmlFormatter.java

License:Open Source License

private void createXml(ISendMessageCallback callback) {

    Document generatedXml = new Document();
    Stack<DocElement> parentStack = new Stack<DocElement>();
    ArrayList<String> outboundPayload = new ArrayList<String>();

    for (Message msg : messagesToProcess) {
        processMsgEntities(parentStack, msg, generatedXml);
    }/*from ww  w.j a  va2s.c  om*/
    XMLOutputter xmlOutputter = new XMLOutputter();
    Format format = null;
    if (xmlFormat.equals(COMPACT_FORMAT)) {
        format = Format.getCompactFormat();
    } else if (xmlFormat.equals(RAW_FORMAT)) {
        format = Format.getRawFormat();
    } else {
        format = Format.getPrettyFormat();
    }
    xmlOutputter.setFormat(format);
    outboundPayload.add(xmlOutputter.outputString(generatedXml));
    callback.sendTextMessage(null, outboundPayload);
}

From source file:org.kisst.cordys.caas.util.XmlNode.java

License:Open Source License

public String compact() {
    XMLOutputter out = new XMLOutputter(Format.getCompactFormat());
    return out.outputString(element);
}