List of usage examples for org.jfree.chart.annotations XYLineAnnotation XYLineAnnotation
public XYLineAnnotation(double x1, double y1, double x2, double y2, Stroke stroke, Paint paint)
From source file:com.compomics.pepshell.view.statistics.RatioStatisticsScatterplotPane.java
@Override public void setGraphData(PepshellProtein aPepshellProtein) { List<XYLineAnnotation> annotations = new ArrayList<>(); XYSeriesCollection allExperiments = new XYSeriesCollection(); for (Experiment anExperiment : experiments) { int proteinIndex = anExperiment.getProteins().indexOf(aPepshellProtein); if (proteinIndex != -1) { XYSeries anExperimentSeries = new XYSeries(anExperiment.getExperimentName()); PepshellProtein experimentPepshellProtein = anExperiment.getProteins().get(proteinIndex); for (PeptideGroup aGroup : experimentPepshellProtein.getPeptideGroups()) { PeptideInterface shortestPeptide = aGroup.getRepresentativePeptide(); if (shortestPeptide instanceof QuantedPeptide && ((QuantedPeptide) shortestPeptide).getRatio() != null) { Double value = Math.log(((QuantedPeptide) shortestPeptide).getRatio()) / Math.log(2); //Double value = ((QuantedPeptide) shortestPeptide).getRatio(); if (value == Double.NEGATIVE_INFINITY) { value = 0.0;// ww w . j ava 2s.c om } double barWithErrors = (shortestPeptide.getEndProteinMatch() + shortestPeptide.getBeginningProteinMatch()) / 2; double error = Math.log(((QuantedPeptide) shortestPeptide).getStandardError()) / Math.log(2); //double error =((QuantedPeptide) shortestPeptide).getStandardError(); XYLineAnnotation vertical = new XYLineAnnotation(barWithErrors, value - error, barWithErrors, value + error, new BasicStroke(), Color.black); XYLineAnnotation horizontalUpper = new XYLineAnnotation(value + error - 0.25, value + error, value + error + 0.25, value + error, new BasicStroke(), Color.black); XYLineAnnotation horizontalLower = new XYLineAnnotation(value - error - 0.25, value - error, value - error + 0.25, value - error, new BasicStroke(), Color.black); annotations.add(vertical); annotations.add(horizontalUpper); annotations.add(horizontalLower); for (int i = shortestPeptide.getBeginningProteinMatch(); i < shortestPeptide .getEndProteinMatch(); i++) { anExperimentSeries.add(i, value); } } } allExperiments.addSeries(anExperimentSeries); } } JFreeChart ratioChart = ChartFactory.createHistogram( "ratio for " + aPepshellProtein.getVisibleAccession() + " over all experiments", "peptide start", "log^2 ratio", allExperiments, PlotOrientation.VERTICAL, true, true, false); chart.setChart(ratioChart); for (XYLineAnnotation anAnnotation : annotations) { ((XYPlot) ratioChart.getPlot()).addAnnotation(anAnnotation); } prettifyChart(ratioChart); }
From source file:org.limy.eclipse.qalab.task.DistanceGraphTask.java
/** * @param dataset // w w w. j ava2 s. c o m * @throws IOException * */ private void drawGraph(XYDataset dataset) throws IOException { JFreeChart chart = ChartFactory.createScatterPlot("Distance from the Main Sequence", "Instability", "Abstractness", dataset, PlotOrientation.VERTICAL, false, false, false); XYPlot plot = chart.getXYPlot(); plot.getRenderer().addAnnotation( new XYLineAnnotation(-0.1, 1.1, 1.1, -0.1, new BasicStroke(2), new Color(50, 220, 50)), Layer.BACKGROUND); plot.getRenderer().setShape(new Ellipse2D.Double(-4, -4, 8, 8)); plot.getRenderer().setPaint(new Color(0xec, 0x76, 0x37)); plot.getDomainAxis().setRangeWithMargins(0, 1); plot.getRangeAxis().setRangeWithMargins(0, 1); chart.getTitle().setPaint(Color.BLUE); plot.setDomainCrosshairVisible(true); plot.setDomainCrosshairPaint(Color.GRAY); plot.setRangeCrosshairVisible(true); plot.setRangeCrosshairPaint(Color.GRAY); LimyGraphUtils.writeImagePng(chart, out, 400, 380); }
From source file:org.owasp.benchmark.score.report.ScatterHome.java
private JFreeChart display(String title, int height, Set<Report> toolResults) { JFrame f = new JFrame(title); f.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); //averages/* w w w . j a v a 2 s.c o m*/ ArrayList<Double> averageCommercialFalseRates = new ArrayList<Double>(); ArrayList<Double> averageCommercialTrueRates = new ArrayList<Double>(); XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries series = new XYSeries("Scores"); for (Report toolReport : toolResults) { if (!toolReport.isCommercial()) { OverallResults overallResults = toolReport.getOverallResults(); series.add(overallResults.getFalsePositiveRate() * 100, overallResults.getTruePositiveRate() * 100); if (toolReport.isCommercial()) { averageCommercialFalseRates.add(overallResults.getFalsePositiveRate()); averageCommercialTrueRates.add(overallResults.getTruePositiveRate()); } } } int commercialToolCount = 0; for (Report toolReport : toolResults) { if (toolReport.isCommercial()) { commercialToolCount++; OverallResults overallResults = toolReport.getOverallResults(); if (!BenchmarkScore.showAveOnlyMode) { series.add(overallResults.getFalsePositiveRate() * 100, overallResults.getTruePositiveRate() * 100); } if (toolReport.isCommercial()) { averageCommercialFalseRates.add(overallResults.getFalsePositiveRate()); averageCommercialTrueRates.add(overallResults.getTruePositiveRate()); } } } for (double d : averageCommercialFalseRates) { afr += d; } afr = afr / averageCommercialFalseRates.size(); for (double d : averageCommercialTrueRates) { atr += d; } atr = atr / averageCommercialTrueRates.size(); if (commercialToolCount > 1 || (BenchmarkScore.showAveOnlyMode && commercialToolCount == 1)) { series.add(afr * 100, atr * 100); } dataset.addSeries(series); chart = ChartFactory.createScatterPlot(title, "False Positive Rate", "True Positive Rate", dataset, PlotOrientation.VERTICAL, true, true, false); theme.apply(chart); XYPlot xyplot = chart.getXYPlot(); initializePlot(xyplot); makeDataLabels(toolResults, xyplot); makeLegend(toolResults, 103, 100.5, dataset, xyplot); for (XYDataItem item : (List<XYDataItem>) series.getItems()) { double x = item.getX().doubleValue(); double y = item.getY().doubleValue(); double z = (x + y) / 2; XYLineAnnotation score = new XYLineAnnotation(x, y, z, z, dashed, Color.blue); xyplot.addAnnotation(score); } ChartPanel cp = new ChartPanel(chart, height, height, 400, 400, 1200, 1200, false, false, false, false, false, false); f.add(cp); f.pack(); f.setLocationRelativeTo(null); // f.setVisible(true); return chart; }
From source file:org.owasp.benchmark.score.report.ScatterVulns.java
private JFreeChart display(String title, int height, String category, Set<Report> toolResults) { JFrame f = new JFrame(title); f.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); // averages/*from w w w . j av a 2 s . com*/ ArrayList<Double> averageFalseRates = new ArrayList<Double>(); ArrayList<Double> averageTrueRates = new ArrayList<Double>(); int commercialToolCount = 0; XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries series = new XYSeries("Scores"); for (Report toolReport : toolResults) { if (!toolReport.isCommercial()) { OverallResult overallResult = toolReport.getOverallResults().getResults(category); series.add(overallResult.falsePositiveRate * 100, overallResult.truePositiveRate * 100); } } for (Report toolReport : toolResults) { if (toolReport.isCommercial()) { OverallResult overallResult = toolReport.getOverallResults().getResults(category); if (!BenchmarkScore.showAveOnlyMode) { series.add(overallResult.falsePositiveRate * 100, overallResult.truePositiveRate * 100); } commercialToolCount++; averageFalseRates.add(overallResult.falsePositiveRate); averageTrueRates.add(overallResult.truePositiveRate); } } for (double d : averageFalseRates) { afr += d; } afr = afr / averageFalseRates.size(); for (double d : averageTrueRates) { atr += d; } atr = atr / averageTrueRates.size(); if (commercialToolCount > 1 || (BenchmarkScore.showAveOnlyMode && commercialToolCount == 1)) { series.add(afr * 100, atr * 100); } dataset.addSeries(series); chart = ChartFactory.createScatterPlot(title, "False Positive Rate", "True Positive Rate", dataset, PlotOrientation.VERTICAL, true, true, false); theme.apply(chart); XYPlot xyplot = chart.getXYPlot(); initializePlot(xyplot); makeDataLabels(category, toolResults, xyplot); makeLegend(category, toolResults, 103, 100.5, dataset, xyplot); for (XYDataItem item : (List<XYDataItem>) series.getItems()) { double x = item.getX().doubleValue(); double y = item.getY().doubleValue(); double z = (x + y) / 2; XYLineAnnotation score = new XYLineAnnotation(x, y, z, z, dashed, Color.blue); xyplot.addAnnotation(score); } ChartPanel cp = new ChartPanel(chart, height, height, 400, 400, 1200, 1200, false, false, false, false, false, false); f.add(cp); f.pack(); f.setLocationRelativeTo(null); // f.setVisible(true); return chart; }
From source file:org.openscience.cdk.applications.taverna.basicutilities.ChartTool.java
/** * Creates a residue plot./*from www . j av a2 s . co m*/ * * @param yValues * @param header * @param xAxis * @param yAxis * @param seriesNames * @return */ public JFreeChart createResiduePlot(List<Double[]> yValues, String header, String xAxis, String yAxis, List<String> seriesNames) { LinkedList<XYLineAnnotation> lines = new LinkedList<XYLineAnnotation>(); DefaultXYDataset xyDataSet = new DefaultXYDataset(); for (int j = 0; j < yValues.size(); j++) { XYSeries series = new XYSeries(seriesNames.get(j)); for (int i = 0; i < yValues.get(j).length; i++) { series.add(i + 1, yValues.get(j)[i]); float dash[] = { 10.0f }; BasicStroke stroke = new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 10.0f, dash, 0.0f); XYLineAnnotation annotation = new XYLineAnnotation(i + 1, 0, i + 1, yValues.get(j)[i], stroke, Color.BLUE); lines.add(annotation); } xyDataSet.addSeries(seriesNames.get(j), series.toArray()); } JFreeChart chart = ChartFactory.createScatterPlot(header, xAxis, yAxis, xyDataSet, PlotOrientation.VERTICAL, true, false, false); XYPlot plot = (XYPlot) chart.getPlot(); plot.setNoDataMessage("NO DATA"); plot.setDomainZeroBaselineVisible(true); plot.setRangeZeroBaselineVisible(true); for (int i = 0; i < lines.size(); i++) { plot.addAnnotation(lines.get(i)); } XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesOutlinePaint(0, Color.black); renderer.setUseOutlinePaint(true); NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis(); domainAxis.setAutoRangeIncludesZero(false); domainAxis.setTickMarkInsideLength(2.0f); domainAxis.setTickMarkOutsideLength(0.0f); NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setTickMarkInsideLength(2.0f); rangeAxis.setTickMarkOutsideLength(0.0f); return chart; }
From source file:org.fhcrc.cpl.viewer.mrm.Utils.java
public static XYLineAnnotation line2Annotation(Line2D.Double l2dd, Stroke s, Paint p) { return new XYLineAnnotation(l2dd.getX1(), l2dd.getY1(), l2dd.getX2(), l2dd.getY2(), s, p); }
From source file:org.owasp.benchmark.score.report.Scatter.java
private JFreeChart display(String title, int height, int width, OverallResults or) { JFrame f = new JFrame(title); f.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); // Note: this is a little weird, since each point is a separate series XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries series = new XYSeries("Scores"); for (OverallResult r : or.getResults()) { series.add(r.fpr * 100, r.tpr * 100); }//from w w w . j a va2s . c o m dataset.addSeries(series); chart = ChartFactory.createScatterPlot(title, "False Positive Rate", "True Positive Rate", dataset, PlotOrientation.VERTICAL, true, true, false); String fontName = "Arial"; DecimalFormat pctFormat = new DecimalFormat("0'%'"); theme = (StandardChartTheme) org.jfree.chart.StandardChartTheme.createJFreeTheme(); theme.setExtraLargeFont(new Font(fontName, Font.PLAIN, 24)); // title theme.setLargeFont(new Font(fontName, Font.PLAIN, 20)); // axis-title theme.setRegularFont(new Font(fontName, Font.PLAIN, 16)); theme.setSmallFont(new Font(fontName, Font.PLAIN, 12)); theme.setRangeGridlinePaint(Color.decode("#C0C0C0")); theme.setPlotBackgroundPaint(Color.white); theme.setChartBackgroundPaint(Color.white); theme.setGridBandPaint(Color.red); theme.setAxisOffset(new RectangleInsets(0, 0, 0, 0)); theme.setBarPainter(new StandardBarPainter()); theme.setAxisLabelPaint(Color.decode("#666666")); theme.apply(chart); XYPlot xyplot = chart.getXYPlot(); NumberAxis rangeAxis = (NumberAxis) xyplot.getRangeAxis(); NumberAxis domainAxis = (NumberAxis) xyplot.getDomainAxis(); xyplot.setOutlineVisible(true); rangeAxis.setRange(-9.99, 109.99); rangeAxis.setNumberFormatOverride(pctFormat); rangeAxis.setTickLabelPaint(Color.decode("#666666")); rangeAxis.setMinorTickCount(5); rangeAxis.setTickUnit(new NumberTickUnit(10)); rangeAxis.setAxisLineVisible(true); rangeAxis.setMinorTickMarksVisible(true); rangeAxis.setTickMarksVisible(true); rangeAxis.setLowerMargin(10); rangeAxis.setUpperMargin(10); xyplot.setRangeGridlineStroke(new BasicStroke()); xyplot.setRangeGridlinePaint(Color.lightGray); xyplot.setRangeMinorGridlinePaint(Color.decode("#DDDDDD")); xyplot.setRangeMinorGridlinesVisible(true); domainAxis.setRange(-5, 105); domainAxis.setNumberFormatOverride(pctFormat); domainAxis.setTickLabelPaint(Color.decode("#666666")); domainAxis.setMinorTickCount(5); domainAxis.setTickUnit(new NumberTickUnit(10)); domainAxis.setAxisLineVisible(true); domainAxis.setTickMarksVisible(true); domainAxis.setMinorTickMarksVisible(true); domainAxis.setLowerMargin(10); domainAxis.setUpperMargin(10); xyplot.setDomainGridlineStroke(new BasicStroke()); xyplot.setDomainGridlinePaint(Color.lightGray); xyplot.setDomainMinorGridlinePaint(Color.decode("#DDDDDD")); xyplot.setDomainMinorGridlinesVisible(true); chart.setTextAntiAlias(true); chart.setAntiAlias(true); chart.removeLegend(); chart.setPadding(new RectangleInsets(20, 20, 20, 20)); xyplot.getRenderer().setSeriesPaint(0, Color.decode("#4572a7")); // // setup item labels // XYItemRenderer renderer = xyplot.getRenderer(); // Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 7.0f, 7.0f); // for ( int i = 0; i < dataset.getSeriesCount(); i++ ) { // renderer.setSeriesShape(i, circle); // renderer.setSeriesPaint(i, Color.blue); // String letter = "" + ((String)dataset.getSeries(i).getKey()).charAt(0); // StandardXYItemLabelGenerator generator = new StandardXYItemLabelGenerator(letter); // renderer.setSeriesItemLabelGenerator(i, generator); // renderer.setSeriesItemLabelsVisible(i, true); // ItemLabelPosition position = new ItemLabelPosition(ItemLabelAnchor.OUTSIDE12, TextAnchor.BASELINE_CENTER ); // renderer.setSeriesPositiveItemLabelPosition(i, position); // } makeDataLabels(or, xyplot); makeLegend(or, 57, 48, dataset, xyplot); // put legend inside plot // LegendTitle lt = new LegendTitle(xyplot); // lt.setItemFont(theme.getSmallFont()); // lt.setPosition(RectangleEdge.RIGHT); // lt.setItemFont(theme.getSmallFont()); // XYTitleAnnotation ta = new XYTitleAnnotation(.7, .55, lt, RectangleAnchor.TOP_LEFT); // ta.setMaxWidth(0.48); // xyplot.addAnnotation(ta); // draw guessing line Stroke dashed = new BasicStroke(1, BasicStroke.CAP_BUTT, BasicStroke.JOIN_BEVEL, 0, new float[] { 6, 3 }, 0); XYLineAnnotation guessing = new XYLineAnnotation(-5, -5, 105, 105, dashed, Color.red); xyplot.addAnnotation(guessing); XYPointerAnnotation worse = makePointer(75, 0, "Worse than guessing", TextAnchor.TOP_CENTER, 90); xyplot.addAnnotation(worse); XYPointerAnnotation better = makePointer(25, 100, "Better than guessing", TextAnchor.BOTTOM_CENTER, 270); xyplot.addAnnotation(better); XYTextAnnotation time = new XYTextAnnotation("Tool run time: " + or.getTime(), 12, -5.6); time.setTextAnchor(TextAnchor.TOP_LEFT); time.setFont(theme.getRegularFont()); time.setPaint(Color.red); xyplot.addAnnotation(time); XYTextAnnotation stroketext = new XYTextAnnotation(" Random Guess", 88, 107); stroketext.setTextAnchor(TextAnchor.CENTER_RIGHT); stroketext.setBackgroundPaint(Color.white); stroketext.setPaint(Color.red); stroketext.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext); XYLineAnnotation strokekey = new XYLineAnnotation(58, 107, 68, 107, dashed, Color.red); xyplot.setBackgroundPaint(Color.white); xyplot.addAnnotation(strokekey); ChartPanel cp = new ChartPanel(chart, height, width, 400, 400, 1200, 1200, false, false, false, false, false, false); f.add(cp); f.pack(); f.setLocationRelativeTo(null); // f.setVisible(true); return chart; }
From source file:org.owasp.benchmark.score.report.ScatterScores.java
private JFreeChart display(String title, int height, int width, List<Report> toolResults) { JFrame f = new JFrame(title); f.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries series = new XYSeries("Scores"); for (int i = 0; i < toolResults.size(); i++) { Report toolReport = toolResults.get(i); OverallResults overallResults = toolReport.getOverallResults(); series.add(overallResults.getFalsePositiveRate() * 100, overallResults.getTruePositiveRate() * 100); }/*from ww w. jav a 2s .c o m*/ dataset.addSeries(series); chart = ChartFactory.createScatterPlot(title, "False Positive Rate", "True Positive Rate", dataset, PlotOrientation.VERTICAL, true, true, false); String fontName = "Arial"; DecimalFormat pctFormat = new DecimalFormat("0'%'"); theme = (StandardChartTheme) org.jfree.chart.StandardChartTheme.createJFreeTheme(); theme.setExtraLargeFont(new Font(fontName, Font.PLAIN, 24)); // title theme.setLargeFont(new Font(fontName, Font.PLAIN, 20)); // axis-title theme.setRegularFont(new Font(fontName, Font.PLAIN, 16)); theme.setSmallFont(new Font(fontName, Font.PLAIN, 12)); theme.setRangeGridlinePaint(Color.decode("#C0C0C0")); theme.setPlotBackgroundPaint(Color.white); theme.setChartBackgroundPaint(Color.white); theme.setGridBandPaint(Color.red); theme.setAxisOffset(new RectangleInsets(0, 0, 0, 0)); theme.setBarPainter(new StandardBarPainter()); theme.setAxisLabelPaint(Color.decode("#666666")); theme.apply(chart); XYPlot xyplot = chart.getXYPlot(); NumberAxis rangeAxis = (NumberAxis) xyplot.getRangeAxis(); NumberAxis domainAxis = (NumberAxis) xyplot.getDomainAxis(); xyplot.setOutlineVisible(true); rangeAxis.setRange(-5, 109.99); rangeAxis.setNumberFormatOverride(pctFormat); rangeAxis.setTickLabelPaint(Color.decode("#666666")); rangeAxis.setMinorTickCount(5); rangeAxis.setTickUnit(new NumberTickUnit(10)); rangeAxis.setAxisLineVisible(true); rangeAxis.setMinorTickMarksVisible(true); rangeAxis.setTickMarksVisible(true); rangeAxis.setLowerMargin(10); rangeAxis.setUpperMargin(10); xyplot.setRangeGridlineStroke(new BasicStroke()); xyplot.setRangeGridlinePaint(Color.lightGray); xyplot.setRangeMinorGridlinePaint(Color.decode("#DDDDDD")); xyplot.setRangeMinorGridlinesVisible(true); domainAxis.setRange(-5, 105); domainAxis.setNumberFormatOverride(pctFormat); domainAxis.setTickLabelPaint(Color.decode("#666666")); domainAxis.setMinorTickCount(5); domainAxis.setTickUnit(new NumberTickUnit(10)); domainAxis.setAxisLineVisible(true); domainAxis.setTickMarksVisible(true); domainAxis.setMinorTickMarksVisible(true); domainAxis.setLowerMargin(10); domainAxis.setUpperMargin(10); xyplot.setDomainGridlineStroke(new BasicStroke()); xyplot.setDomainGridlinePaint(Color.lightGray); xyplot.setDomainMinorGridlinePaint(Color.decode("#DDDDDD")); xyplot.setDomainMinorGridlinesVisible(true); chart.setTextAntiAlias(true); chart.setAntiAlias(true); chart.removeLegend(); chart.setPadding(new RectangleInsets(20, 20, 20, 20)); xyplot.getRenderer().setSeriesPaint(0, Color.decode("#4572a7")); // // setup item labels // XYItemRenderer renderer = xyplot.getRenderer(); // Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 7.0f, 7.0f); // for ( int i = 0; i < dataset.getSeriesCount(); i++ ) { // renderer.setSeriesShape(i, circle); // renderer.setSeriesPaint(i, Color.blue); // String label = ""+((String)dataset.getSeries(i).getKey()); // int idx = label.indexOf( ':'); // label = label.substring( 0, idx ); // StandardXYItemLabelGenerator generator = new StandardXYItemLabelGenerator(label); // renderer.setSeriesItemLabelGenerator(i, generator); // renderer.setSeriesItemLabelsVisible(i, true); // ItemLabelPosition position = new ItemLabelPosition(ItemLabelAnchor.OUTSIDE12, TextAnchor.BASELINE_CENTER ); // renderer.setSeriesPositiveItemLabelPosition(i, position); // } makeDataLabels(toolResults, xyplot); makeLegend(toolResults, 57, 48, dataset, xyplot); Stroke dashed = new BasicStroke(1, BasicStroke.CAP_BUTT, BasicStroke.JOIN_BEVEL, 0, new float[] { 6, 3 }, 0); for (XYDataItem item : (List<XYDataItem>) series.getItems()) { double x = item.getX().doubleValue(); double y = item.getY().doubleValue(); double z = (x + y) / 2; XYLineAnnotation score = new XYLineAnnotation(x, y, z, z, dashed, Color.blue); xyplot.addAnnotation(score); } // // put legend inside plot // LegendTitle lt = new LegendTitle(xyplot); // lt.setItemFont(theme.getSmallFont()); // lt.setPosition(RectangleEdge.RIGHT); // lt.setItemFont(theme.getSmallFont()); // XYTitleAnnotation ta = new XYTitleAnnotation(.7, .55, lt, RectangleAnchor.TOP_LEFT); // ta.setMaxWidth(0.48); // xyplot.addAnnotation(ta); // draw guessing line XYLineAnnotation guessing = new XYLineAnnotation(-5, -5, 105, 105, dashed, Color.red); xyplot.addAnnotation(guessing); XYPointerAnnotation worse = makePointer(75, 5, "Worse than guessing", TextAnchor.TOP_CENTER, 90); xyplot.addAnnotation(worse); XYPointerAnnotation better = makePointer(25, 100, "Better than guessing", TextAnchor.BOTTOM_CENTER, 270); xyplot.addAnnotation(better); XYTextAnnotation stroketext = new XYTextAnnotation(" Random Guess", 88, 107); stroketext.setTextAnchor(TextAnchor.CENTER_RIGHT); stroketext.setBackgroundPaint(Color.white); stroketext.setPaint(Color.red); stroketext.setFont(theme.getRegularFont()); xyplot.addAnnotation(stroketext); XYLineAnnotation strokekey = new XYLineAnnotation(58, 107, 68, 107, dashed, Color.red); xyplot.setBackgroundPaint(Color.white); xyplot.addAnnotation(strokekey); ChartPanel cp = new ChartPanel(chart, height, width, 400, 400, 1200, 1200, false, false, false, false, false, false); f.add(cp); f.pack(); f.setLocationRelativeTo(null); // f.setVisible(true); return chart; }
From source file:asl.util.PlotMaker2.java
public void writePlot(String fileName) { //System.out.format("== plotTitle=[%s] fileName=[%s]\n", plotTitle, fileName); File outputFile = new File(fileName); // Check that we will be able to output the file without problems and if not --> return if (!checkFileOut(outputFile)) { System.out.format("== plotMaker: request to output plot=[%s] but we are unable to create it " + " --> skip plot\n", fileName); return;/* www . j a v a 2 s . c om*/ } NumberAxis horizontalAxis = new NumberAxis("x-axis default"); // x = domain if (fileName.contains("nlnm") || fileName.contains("coher") || fileName.contains("stn")) { // NLNM or StationDeviation horizontalAxis = new LogarithmicAxis("Period (sec)"); horizontalAxis.setRange(new Range(1, 11000)); horizontalAxis.setTickUnit(new NumberTickUnit(5.0)); } else { // EventCompareSynthetics/StrongMotion horizontalAxis = new NumberAxis("Time (s)"); double x[] = panels.get(0).getTraces().get(0).getxData(); horizontalAxis.setRange(new Range(x[0], x[x.length - 1])); } CombinedDomainXYPlot combinedPlot = new CombinedDomainXYPlot(horizontalAxis); combinedPlot.setGap(15.); // Loop over (3) panels for this plot: for (Panel panel : panels) { NumberAxis verticalAxis = new NumberAxis("y-axis default"); // y = range if (fileName.contains("nlnm") || fileName.contains("stn")) { // NLNM or StationDeviation verticalAxis = new NumberAxis("PSD 10log10(m**2/s**4)/Hz dB"); verticalAxis.setRange(new Range(-190, -95)); verticalAxis.setTickUnit(new NumberTickUnit(5.0)); } else if (fileName.contains("coher")) { // Coherence verticalAxis = new NumberAxis("Coherence, Gamma"); verticalAxis.setRange(new Range(0, 1.2)); verticalAxis.setTickUnit(new NumberTickUnit(0.1)); } else { // EventCompareSynthetics/StrongMotion verticalAxis = new NumberAxis("Displacement (m)"); } Font fontPlain = new Font("Verdana", Font.PLAIN, 14); Font fontBold = new Font("Verdana", Font.BOLD, 18); verticalAxis.setLabelFont(fontBold); verticalAxis.setTickLabelFont(fontPlain); horizontalAxis.setLabelFont(fontBold); horizontalAxis.setTickLabelFont(fontPlain); XYSeriesCollection seriesCollection = new XYSeriesCollection(); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); XYPlot xyplot = new XYPlot((XYDataset) seriesCollection, horizontalAxis, verticalAxis, renderer); xyplot.setDomainGridlinesVisible(true); xyplot.setRangeGridlinesVisible(true); xyplot.setRangeGridlinePaint(Color.black); xyplot.setDomainGridlinePaint(Color.black); // Plot each trace on this panel: int iTrace = 0; for (Trace trace : panel.getTraces()) { XYSeries series = new XYSeries(trace.getName()); double xdata[] = trace.getxData(); double ydata[] = trace.getyData(); for (int k = 0; k < xdata.length; k++) { series.add(xdata[k], ydata[k]); } renderer.setSeriesPaint(iTrace, trace.getColor()); renderer.setSeriesStroke(iTrace, trace.getStroke()); renderer.setSeriesLinesVisible(iTrace, true); renderer.setSeriesShapesVisible(iTrace, false); seriesCollection.addSeries(series); iTrace++; } // Add Annotations for each trace - This is done in a separate loop so that // the upper/lower limits for this panel will be known double xmin = horizontalAxis.getRange().getLowerBound(); double xmax = horizontalAxis.getRange().getUpperBound(); double ymin = verticalAxis.getRange().getLowerBound(); double ymax = verticalAxis.getRange().getUpperBound(); double delX = Math.abs(xmax - xmin); double delY = Math.abs(ymax - ymin); // Annotation (x,y) in normalized units - where upper-right corner = (1,1) double xAnn = 0.97; // Right center coords of the trace name (e.g., "00-LHZ") double yAnn = 0.95; double yOff = 0.05; // Vertical distance between different trace legends iTrace = 0; for (Trace trace : panel.getTraces()) { if (!trace.getName().contains("NLNM") && !trace.getName().contains("NHNM")) { // x1 > x2 > x3, e.g.: // o-------o 00-LHZ // x3 x2 x1 double scale = .01; // Controls distance between trace label and line segment double xL = .04; // Length of trace line segment in legend double xAnn2 = xAnn - scale * trace.getName().length(); double xAnn3 = xAnn - scale * trace.getName().length() - xL; double x1 = xAnn * delX + xmin; // Right hand x-coord of text in range units double x2 = xAnn2 * delX + xmin; // x-coord of line segment end in range units double x3 = xAnn3 * delX + xmin; // x-coord of line segment end in range units double y = (yAnn - (iTrace * yOff)) * delY + ymin; if (horizontalAxis instanceof LogarithmicAxis) { double logMin = Math.log10(xmin); double logMax = Math.log10(xmax); delX = logMax - logMin; x1 = Math.pow(10, xAnn * delX + logMin); x2 = Math.pow(10, xAnn2 * delX + logMin); x3 = Math.pow(10, xAnn3 * delX + logMin); } xyplot.addAnnotation(new XYLineAnnotation(x3, y, x2, y, trace.getStroke(), trace.getColor())); XYTextAnnotation xyText = new XYTextAnnotation(trace.getName(), x1, y); xyText.setFont(new Font("Verdana", Font.BOLD, 18)); xyText.setTextAnchor(TextAnchor.CENTER_RIGHT); xyplot.addAnnotation(xyText); } iTrace++; } combinedPlot.add(xyplot, 1); } // panel final JFreeChart chart = new JFreeChart(combinedPlot); chart.setTitle(new TextTitle(plotTitle, new Font("Verdana", Font.BOLD, 18))); chart.removeLegend(); try { ChartUtilities.saveChartAsPNG(outputFile, chart, 1400, 1400); } catch (IOException e) { System.err.println("Problem occurred creating chart."); } }
From source file:asl.plotmaker.PlotMaker2.java
public void writePlot(String fileName) { // System.out.format("== plotTitle=[%s] fileName=[%s]\n", plotTitle, // fileName); File outputFile = new File(fileName); // Check that we will be able to output the file without problems and if // not --> return if (!checkFileOut(outputFile)) { // System.out.format("== plotMaker: request to output plot=[%s] but we are unable to create it " // + " --> skip plot\n", fileName ); logger.warn("== Request to output plot=[{}] but we are unable to create it " + " --> skip plot\n", fileName);/* w ww . j av a 2s . com*/ return; } NumberAxis horizontalAxis = new NumberAxis("x-axis default"); // x = // domain if (fileName.contains("alnm") || fileName.contains("nlnm") || fileName.contains("coher") || fileName.contains("stn")) { // NLNM or StationDeviation horizontalAxis = new LogarithmicAxis("Period (sec)"); horizontalAxis.setRange(new Range(1, 11000)); horizontalAxis.setTickUnit(new NumberTickUnit(5.0)); } else { // EventCompareSynthetics/StrongMotion horizontalAxis = new NumberAxis("Time (s)"); double x[] = panels.get(0).getTraces().get(0).getxData(); horizontalAxis.setRange(new Range(x[0], x[x.length - 1])); } CombinedDomainXYPlot combinedPlot = new CombinedDomainXYPlot(horizontalAxis); combinedPlot.setGap(15.); // Loop over (3) panels for this plot: for (Panel panel : panels) { NumberAxis verticalAxis = new NumberAxis("y-axis default"); // y = // range if (fileName.contains("alnm") || fileName.contains("nlnm") || fileName.contains("stn")) { // NLNM // or // StationDeviation verticalAxis = new NumberAxis("PSD 10log10(m**2/s**4)/Hz dB"); verticalAxis.setRange(new Range(-190, -80)); verticalAxis.setTickUnit(new NumberTickUnit(5.0)); } else if (fileName.contains("coher")) { // Coherence verticalAxis = new NumberAxis("Coherence, Gamma"); verticalAxis.setRange(new Range(0, 1.2)); verticalAxis.setTickUnit(new NumberTickUnit(0.1)); } else { // EventCompareSynthetics/StrongMotion verticalAxis = new NumberAxis("Displacement (m)"); } Font fontPlain = new Font("Verdana", Font.PLAIN, 14); Font fontBold = new Font("Verdana", Font.BOLD, 18); verticalAxis.setLabelFont(fontBold); verticalAxis.setTickLabelFont(fontPlain); horizontalAxis.setLabelFont(fontBold); horizontalAxis.setTickLabelFont(fontPlain); XYSeriesCollection seriesCollection = new XYSeriesCollection(); XYDotRenderer renderer = new XYDotRenderer(); XYPlot xyplot = new XYPlot(seriesCollection, horizontalAxis, verticalAxis, renderer); xyplot.setDomainGridlinesVisible(true); xyplot.setRangeGridlinesVisible(true); xyplot.setRangeGridlinePaint(Color.black); xyplot.setDomainGridlinePaint(Color.black); // Plot each trace on this panel: int iTrace = 0; for (Trace trace : panel.getTraces()) { XYSeries series = new XYSeries(trace.getName()); double xdata[] = trace.getxData(); double ydata[] = trace.getyData(); for (int k = 0; k < xdata.length; k++) { series.add(xdata[k], ydata[k]); } renderer.setSeriesPaint(iTrace, trace.getColor()); renderer.setSeriesStroke(iTrace, trace.getStroke()); seriesCollection.addSeries(series); iTrace++; } // Add Annotations for each trace - This is done in a separate loop // so that // the upper/lower limits for this panel will be known double xmin = horizontalAxis.getRange().getLowerBound(); double xmax = horizontalAxis.getRange().getUpperBound(); double ymin = verticalAxis.getRange().getLowerBound(); double ymax = verticalAxis.getRange().getUpperBound(); double delX = Math.abs(xmax - xmin); double delY = Math.abs(ymax - ymin); // Annotation (x,y) in normalized units - where upper-right corner = // (1,1) double xAnn = 0.97; // Right center coords of the trace name (e.g., // "00-LHZ") double yAnn = 0.95; double yOff = 0.05; // Vertical distance between different trace // legends iTrace = 0; for (Trace trace : panel.getTraces()) { if (!trace.getName().contains("NLNM") && !trace.getName().contains("NHNM") && !trace.getName().contains("ALNM")) { // x1 > x2 > x3, e.g.: // o-------o 00-LHZ // x3 x2 x1 double scale = .01; // Controls distance between trace label // and line segment double xL = .04; // Length of trace line segment in legend double xAnn2 = xAnn - scale * trace.getName().length(); double xAnn3 = xAnn - scale * trace.getName().length() - xL; double x1 = xAnn * delX + xmin; // Right hand x-coord of // text in range units double x2 = xAnn2 * delX + xmin; // x-coord of line segment // end in range units double x3 = xAnn3 * delX + xmin; // x-coord of line segment // end in range units double y = (yAnn - (iTrace * yOff)) * delY + ymin; if (horizontalAxis instanceof LogarithmicAxis) { double logMin = Math.log10(xmin); double logMax = Math.log10(xmax); delX = logMax - logMin; x1 = Math.pow(10, xAnn * delX + logMin); x2 = Math.pow(10, xAnn2 * delX + logMin); x3 = Math.pow(10, xAnn3 * delX + logMin); } xyplot.addAnnotation(new XYLineAnnotation(x3, y, x2, y, trace.getStroke(), trace.getColor())); XYTextAnnotation xyText = new XYTextAnnotation(trace.getName(), x1, y); xyText.setFont(new Font("Verdana", Font.BOLD, 18)); xyText.setTextAnchor(TextAnchor.CENTER_RIGHT); xyplot.addAnnotation(xyText); } iTrace++; } combinedPlot.add(xyplot, 1); } // panel final JFreeChart chart = new JFreeChart(combinedPlot); chart.setTitle(new TextTitle(plotTitle, new Font("Verdana", Font.BOLD, 18))); chart.removeLegend(); try { ChartUtilities.saveChartAsPNG(outputFile, chart, 1400, 1400); } catch (IOException e) { // System.err.println("Problem occurred creating chart."); logger.error("IOException:", e); } }