List of usage examples for org.jfree.chart.axis ValueAxis MAXIMUM_TICK_COUNT
int MAXIMUM_TICK_COUNT
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From source file:edu.jhuapl.graphs.jfreechart.utils.CustomLabelNumberAxis.java
@Override protected List<Tick> refreshTicksHorizontal(Graphics2D g2, Rectangle2D dataArea, RectangleEdge edge) { List<Tick> result = new ArrayList<Tick>(); Font tickLabelFont = getTickLabelFont(); g2.setFont(tickLabelFont);//ww w .j a va 2s.c o m if (isAutoTickUnitSelection()) { selectAutoTickUnit(g2, dataArea, edge); } TickUnit tu = getTickUnit(); double size = tu.getSize(); int count = this.tickCount != null ? this.tickCount : calculateVisibleTickCount(); double lowestTickValue = this.lowestTickValue != null ? this.lowestTickValue : calculateLowestVisibleTickValue(); if (count <= ValueAxis.MAXIMUM_TICK_COUNT) { int minorTickSpaces = getMinorTickCount(); if (minorTickSpaces <= 0) { minorTickSpaces = tu.getMinorTickCount(); } for (int minorTick = 1; minorTick < minorTickSpaces; minorTick++) { double minorTickValue = lowestTickValue - size * minorTick / minorTickSpaces; if (getRange().contains(minorTickValue)) { result.add(new NumberTick(TickType.MINOR, minorTickValue, "", TextAnchor.TOP_CENTER, TextAnchor.CENTER, 0.0)); } } for (int i = 0; i < count; i++) { double currentTickValue = lowestTickValue + (i * size); String tickLabel = tickValueToLabelMapping.get(currentTickValue); if (tickLabel == null) { NumberFormat formatter = getNumberFormatOverride(); if (formatter != null) { tickLabel = formatter.format(currentTickValue); } else { tickLabel = getTickUnit().valueToString(currentTickValue); } } TextAnchor anchor = null; TextAnchor rotationAnchor = null; double angle = 0.0; if (isVerticalTickLabels()) { anchor = TextAnchor.CENTER_RIGHT; rotationAnchor = TextAnchor.CENTER_RIGHT; if (edge == RectangleEdge.TOP) { angle = Math.PI / 2.0; } else { angle = -Math.PI / 2.0; } } else { if (edge == RectangleEdge.TOP) { anchor = TextAnchor.BOTTOM_CENTER; rotationAnchor = TextAnchor.BOTTOM_CENTER; } else { anchor = TextAnchor.TOP_CENTER; rotationAnchor = TextAnchor.TOP_CENTER; } } Tick tick = new NumberTick(new Double(currentTickValue), tickLabel, anchor, rotationAnchor, angle); result.add(tick); double nextTickValue = lowestTickValue + ((i + 1) * size); for (int minorTick = 1; minorTick < minorTickSpaces; minorTick++) { double minorTickValue = currentTickValue + (nextTickValue - currentTickValue) * minorTick / minorTickSpaces; if (getRange().contains(minorTickValue)) { result.add(new NumberTick(TickType.MINOR, minorTickValue, "", TextAnchor.TOP_CENTER, TextAnchor.CENTER, 0.0)); } } } } return result; }
From source file:edu.jhuapl.graphs.jfreechart.utils.CustomLabelNumberAxis.java
@Override protected List<Tick> refreshTicksVertical(Graphics2D g2, Rectangle2D dataArea, RectangleEdge edge) { List<Tick> result = new ArrayList<Tick>(); Font tickLabelFont = getTickLabelFont(); g2.setFont(tickLabelFont);/*w w w . j a va 2 s . c o m*/ if (isAutoTickUnitSelection()) { selectAutoTickUnit(g2, dataArea, edge); } TickUnit tu = getTickUnit(); double size = tu.getSize(); int count = this.tickCount != null ? this.tickCount : calculateVisibleTickCount(); double lowestTickValue = this.lowestTickValue != null ? this.lowestTickValue : calculateLowestVisibleTickValue(); if (count <= ValueAxis.MAXIMUM_TICK_COUNT) { int minorTickSpaces = getMinorTickCount(); if (minorTickSpaces <= 0) { minorTickSpaces = tu.getMinorTickCount(); } for (int minorTick = 1; minorTick < minorTickSpaces; minorTick++) { double minorTickValue = lowestTickValue - size * minorTick / minorTickSpaces; if (getRange().contains(minorTickValue)) { result.add(new NumberTick(TickType.MINOR, minorTickValue, "", TextAnchor.TOP_CENTER, TextAnchor.CENTER, 0.0)); } } for (int i = 0; i < count; i++) { double currentTickValue = lowestTickValue + (i * size); String tickLabel = tickValueToLabelMapping.get(currentTickValue); if (tickLabel == null) { NumberFormat formatter = getNumberFormatOverride(); if (formatter != null) { tickLabel = formatter.format(currentTickValue); } else { tickLabel = getTickUnit().valueToString(currentTickValue); } } TextAnchor anchor = null; TextAnchor rotationAnchor = null; double angle = 0.0; if (isVerticalTickLabels()) { if (edge == RectangleEdge.LEFT) { anchor = TextAnchor.BOTTOM_CENTER; rotationAnchor = TextAnchor.BOTTOM_CENTER; angle = -Math.PI / 2.0; } else { anchor = TextAnchor.BOTTOM_CENTER; rotationAnchor = TextAnchor.BOTTOM_CENTER; angle = Math.PI / 2.0; } } else { if (edge == RectangleEdge.LEFT) { anchor = TextAnchor.CENTER_RIGHT; rotationAnchor = TextAnchor.CENTER_RIGHT; } else { anchor = TextAnchor.CENTER_LEFT; rotationAnchor = TextAnchor.CENTER_LEFT; } } Tick tick = new NumberTick(new Double(currentTickValue), tickLabel, anchor, rotationAnchor, angle); result.add(tick); double nextTickValue = lowestTickValue + ((i + 1) * size); for (int minorTick = 1; minorTick < minorTickSpaces; minorTick++) { double minorTickValue = currentTickValue + (nextTickValue - currentTickValue) * minorTick / minorTickSpaces; if (getRange().contains(minorTickValue)) { result.add(new NumberTick(TickType.MINOR, minorTickValue, "", TextAnchor.TOP_CENTER, TextAnchor.CENTER, 0.0)); } } } } return result; }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.ComparisonsSelectionOverviewBubbleChart.java
private JFreeChart updateBubbleChartChart(Set<QuantDiseaseGroupsComparison> selectedComparisonList) { if (userCustomizedComparison != null) { return updateBubbleChartChartWithCustUserData(selectedComparisonList); }// w ww. j a v a 2 s .c om tooltipsProtNumberMap.clear(); DefaultXYZDataset defaultxyzdataset = new DefaultXYZDataset(); int counter = 0; int upper = -1; boolean significantOnly = this.Quant_Central_Manager.isSignificantOnly(); for (QuantDiseaseGroupsComparison qc : selectedComparisonList) { if (significantOnly) { int upperCounter = 0; for (DiseaseGroupsComparisonsProteinLayout qp : qc.getComparProtsMap().values()) { if (qp == null) { continue; } if (qp.getSignificantTrindCategory() == 2 || qp.getSignificantTrindCategory() == 5) { continue; } upperCounter++; } if (upperCounter > upper) { upper = upperCounter; } } else { if (qc.getComparProtsMap() == null) { System.out.println("null qc " + qc.getComparisonHeader()); } if (qc.getComparProtsMap().size() > upper) { upper = qc.getComparProtsMap().size(); } } } final Map<Integer, Color[]> seriousColorMap = new HashMap<Integer, Color[]>(); Color[] dataColor = new Color[] { Color.WHITE, new Color(0, 153, 0), new Color(0, 229, 132), stableColor, new Color(247, 119, 119), new Color(204, 0, 0), Color.WHITE }; double[] yAxisValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[] xAxisValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[] widthValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[][] seriesValuesI = { yAxisValueI, xAxisValueI, widthValueI }; seriousColorMap.put(0, new Color[] { Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE }); defaultxyzdataset.addSeries(" ", seriesValuesI); for (QuantDiseaseGroupsComparison qc : selectedComparisonList) { double[] tempWidthValue = new double[8]; if (qc.getComparProtsMap() == null) { continue; } for (String key : qc.getComparProtsMap().keySet()) { qc.getComparProtsMap().get(key).updateLabelLayout(); if (significantOnly && (qc.getComparProtsMap().get(key).getSignificantTrindCategory() == 2 || qc.getComparProtsMap().get(key).getSignificantTrindCategory() == 5)) { tempWidthValue[3] = 0; tempWidthValue[6] = 0; } else { tempWidthValue[qc.getComparProtsMap().get(key).getSignificantTrindCategory() + 1] = tempWidthValue[qc.getComparProtsMap().get(key).getSignificantTrindCategory() + 1] + 1; } } if (tempWidthValue[3] > 0 && tempWidthValue[3] >= 0) { stableColor = new Color(1, 141, 244); } else { stableColor = Color.decode("#b5babb"); } tempWidthValue[3] = tempWidthValue[3] + tempWidthValue[6]; tempWidthValue[6] = 0; dataColor[3] = stableColor; int length = 0; if (upper < 10) { upper = 10; } double[] tooltipNumbess = new double[tempWidthValue.length]; System.arraycopy(tempWidthValue, 0, tooltipNumbess, 0, tempWidthValue.length); this.tooltipsProtNumberMap.put(qc.getComparisonHeader(), tooltipNumbess); for (int x = 0; x < tempWidthValue.length; x++) { if (tempWidthValue[x] > 0) { tempWidthValue[x] = scaleValues(tempWidthValue[x], upper, 2.5, 0.05);//Math.max(tempWidthValue[x] * 1.5 / upper, 0.05); length++; } } double[] yAxisValue = new double[length]; double[] xAxisValue = new double[length]; double[] widthValue = new double[length]; Color[] serColorArr = new Color[length]; length = 0; for (int x = 0; x < tempWidthValue.length; x++) { if (tempWidthValue[x] > 0) { xAxisValue[length] = x; yAxisValue[length] = counter + 1; widthValue[length] = tempWidthValue[x]; serColorArr[length] = dataColor[x]; length++; } } if (length == 1 && selectedComparisonList.size() == 1) { widthValue[0] = 1; } seriousColorMap.put(counter + 1, serColorArr); double[][] seriesValues = { yAxisValue, xAxisValue, widthValue }; defaultxyzdataset.addSeries(qc.getComparisonHeader(), seriesValues); counter++; } double[] yAxisValueII = new double[0]; double[] xAxisValueII = new double[0]; double[] widthValueII = new double[0]; seriousColorMap.put(counter + 1, new Color[] {}); double[][] seriesValuesII = { yAxisValueII, xAxisValueII, widthValueII }; defaultxyzdataset.addSeries(" ", seriesValuesII); final Color[] labelsColor = new Color[] { Color.LIGHT_GRAY, new Color(80, 183, 71), Color.LIGHT_GRAY, new Color(1, 141, 244), Color.LIGHT_GRAY, new Color(204, 0, 0), Color.LIGHT_GRAY }; Font font = new Font("Verdana", Font.BOLD, 13); SymbolAxis yAxis = new SymbolAxis(null, new String[] { " ", "Decreased", " ", "Equal", " ", "Increased", " " }) { int i = 0; @Override public RectangleInsets getTickLabelInsets() { // System.out.println("at ---- super.getTickLabelInsets() " + super.getTickLabelInsets()); // if (i == 0) { // i++; // return new RectangleInsets(-5, -5, 0, 0); // }else // return super.getTickLabelInsets(); //To change body of generated methods, choose Tools | Templates. } int x = 0; @Override public Paint getTickLabelPaint() { if (x >= labelsColor.length) { x = 0; } return labelsColor[x++]; } }; yAxis.setAutoRangeStickyZero(true); yAxis.setFixedAutoRange(8); yAxis.setTickLabelFont(font); yAxis.setGridBandsVisible(false); yAxis.setAxisLinePaint(Color.LIGHT_GRAY); yAxis.setTickMarksVisible(false); yAxis.setUpperBound(6); String[] xAxisLabels = new String[selectedComparisonList.size() + 2]; int x = 0; xAxisLabels[x] = ""; int maxLength = -1; //init labels color final Color[] diseaseGroupslabelsColor = new Color[selectedComparisonList.size() + 2]; diseaseGroupslabelsColor[x] = Color.WHITE; x++; for (QuantDiseaseGroupsComparison comp : selectedComparisonList) { String header = comp.getComparisonHeader(); String updatedHeader = header.split(" / ")[0].split("\n")[0] + " / " + header.split(" / ")[1].split("\n")[0] + ""; xAxisLabels[x] = updatedHeader + " (" + comp.getDatasetIndexes().length + ") "; if (xAxisLabels[x].length() > maxLength) { maxLength = xAxisLabels[x].length(); } diseaseGroupslabelsColor[x] = diseaseColorMap.get(header.split(" / ")[0].split("\n")[1]); x++; } xAxisLabels[x] = ""; diseaseGroupslabelsColor[x] = Color.WHITE; SymbolAxis xAxis; final boolean finalNum; finalNum = maxLength > 30 && selectedComparisonList.size() > 4; xAxis = new SymbolAxis(null, xAxisLabels) { int x = 0; @Override public Paint getTickLabelPaint() { if (x >= diseaseGroupslabelsColor.length) { x = 0; } return diseaseGroupslabelsColor[x++]; } private final boolean localfinal = finalNum; @Override protected List refreshTicksHorizontal(Graphics2D g2, Rectangle2D dataArea, RectangleEdge edge) { if (localfinal) { setVerticalTickLabels(localfinal); return super.refreshTicksHorizontal(g2, dataArea, edge); } List ticks = new java.util.ArrayList(); Font tickLabelFont = getTickLabelFont(); g2.setFont(tickLabelFont); double size = getTickUnit().getSize(); int count = calculateVisibleTickCount(); double lowestTickValue = calculateLowestVisibleTickValue(); double previousDrawnTickLabelPos = 0.0; double previousDrawnTickLabelLength = 0.0; if (count <= ValueAxis.MAXIMUM_TICK_COUNT) { for (int i = 0; i < count; i++) { double currentTickValue = lowestTickValue + (i * size); double xx = valueToJava2D(currentTickValue, dataArea, edge); String tickLabel; NumberFormat formatter = getNumberFormatOverride(); if (formatter != null) { tickLabel = formatter.format(currentTickValue) + " "; } else { tickLabel = valueToString(currentTickValue) + " "; } // avoid to draw overlapping tick labels Rectangle2D bounds = TextUtilities.getTextBounds(tickLabel, g2, g2.getFontMetrics()); double tickLabelLength = isVerticalTickLabels() ? bounds.getHeight() : bounds.getWidth(); boolean tickLabelsOverlapping = false; if (i > 0) { double avgTickLabelLength = (previousDrawnTickLabelLength + tickLabelLength) / 2.0; if (Math.abs(xx - previousDrawnTickLabelPos) < avgTickLabelLength) { tickLabelsOverlapping = true; } } if (tickLabelsOverlapping) { setVerticalTickLabels(true); } else { // remember these values for next comparison previousDrawnTickLabelPos = xx; previousDrawnTickLabelLength = tickLabelLength; } TextAnchor anchor; TextAnchor rotationAnchor; double angle = 0.0; if (isVerticalTickLabels()) { anchor = TextAnchor.CENTER_RIGHT; rotationAnchor = TextAnchor.CENTER_RIGHT; if (edge == RectangleEdge.TOP) { angle = 76.5; } else { angle = -76.5; } } else { if (edge == RectangleEdge.TOP) { anchor = TextAnchor.BOTTOM_CENTER; rotationAnchor = TextAnchor.BOTTOM_CENTER; } else { anchor = TextAnchor.TOP_CENTER; rotationAnchor = TextAnchor.TOP_CENTER; } } Tick tick = new NumberTick(new Double(currentTickValue), tickLabel, anchor, rotationAnchor, angle); ticks.add(tick); } } return ticks; } }; // } xAxis.setTickLabelFont(font); xAxis.setTickLabelInsets(new RectangleInsets(2, 20, 2, 20)); xAxis.setAutoRangeStickyZero(true); xAxis.setTickMarksVisible(false); xAxis.setUpperBound(diseaseGroupslabelsColor.length - 1); xAxis.setGridBandsVisible(false); xAxis.setAxisLinePaint(Color.LIGHT_GRAY); int scale = XYBubbleRenderer.SCALE_ON_RANGE_AXIS; XYItemRenderer xyitemrenderer = new XYBubbleRenderer(scale) { private int counter = 0; private int localSerious = -1; private final Map<Integer, Color[]> localSeriousColorMap = seriousColorMap; @Override public Paint getSeriesPaint(int series) { if (series != localSerious || isNewImge || localSeriousColorMap.get(series).length == counter) { counter = 0; isNewImge = false; } localSerious = series; Color c = localSeriousColorMap.get(series)[counter]; counter++; return c; } }; XYPlot xyplot = new XYPlot(defaultxyzdataset, xAxis, yAxis, xyitemrenderer) { @Override protected void drawRangeGridlines(Graphics2D g2, Rectangle2D area, List ticks) { try { if (!ticks.isEmpty()) { ticks.remove(0); } if (!ticks.isEmpty()) { ticks.remove(ticks.size() - 1); } } catch (Exception e) { } super.drawRangeGridlines(g2, area, ticks); //To change body of generated methods, choose Tools | Templates. } // private final Color[] labelsColor = new Color[]{new Color(0, 153, 0), new Color(0, 229, 132), new Color(1, 141, 244), new Color(255, 51, 51), new Color(204, 0, 0), Color.decode("#b5babb")}; // // private final Font font = new Font("Verdana", Font.PLAIN, 12); // private final String[] labels = new String[]{"Decreased 100%", "Decreased <100% ", "Equal", " Increased <100%", "Increased 100%", "No Quant. Info."}; // // @Override // public LegendItemCollection getLegendItems() { // LegendItemCollection legendItemCollection = new LegendItemCollection(); // for (int i = 0; i < labelsColor.length; i++) { // LegendItem item = new LegendItem(labels[i], labelsColor[i]); // item.setLabelFont(font); // // legendItemCollection.add(item); // // } // // return legendItemCollection;//To change body of generated methods, choose Tools | Templates. // } }; JFreeChart generatedChart = new JFreeChart(xyplot) { }; xyplot.setOutlineVisible(false); LegendTitle legend = generatedChart.getLegend(); legend.setVisible(false); // legend.setMargin(20, 0, 0, 0); //// legend.setBorder(1, 1, 1, 1); // legend.setFrame(new BlockBorder(1, 0, 1, 0, Color.LIGHT_GRAY)); // generatedChart.removeLegend(); // xyplot.setForegroundAlpha(0.65F); xyplot.setBackgroundPaint(Color.WHITE); generatedChart.setBackgroundPaint(Color.WHITE); generatedChart.setPadding(new RectangleInsets(0, 0, 0, 0)); Quant_Central_Manager.setProteinsOverviewBubbleChart(generatedChart); // exporter.writeChartToPDFFile(generatedChart, 595, 842, "bublechart.pdf"); return generatedChart; }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.ComparisonsSelectionOverviewBubbleChart.java
private JFreeChart updateBubbleChartChartWithCustUserData( Set<QuantDiseaseGroupsComparison> selectedComparisonList) { tooltipsProtNumberMap.clear();//from ww w . ja v a 2 s . c om DefaultXYZDataset defaultxyzdataset = new DefaultXYZDataset(); int counter = 0; int upper = -1; boolean significantOnly = this.Quant_Central_Manager.isSignificantOnly(); if (userCustomizedComparison.getComparProtsMap().size() > upper) { upper = userCustomizedComparison.getComparProtsMap().size(); } for (QuantDiseaseGroupsComparison qc : selectedComparisonList) { if (significantOnly) { int upperCounter = 0; for (DiseaseGroupsComparisonsProteinLayout qp : qc.getComparProtsMap().values()) { if (qp == null) { continue; } if (qp.getSignificantTrindCategory() == 2) { continue; } upperCounter++; } if (upperCounter > upper) { upper = upperCounter; } } else { if (qc.getComparProtsMap() == null) { System.out.println("null qc " + qc.getComparisonHeader()); } if (qc.getComparProtsMap().size() > upper) { upper = qc.getComparProtsMap().size(); } } } final Map<Integer, Color[]> seriousColorMap = new HashMap<Integer, Color[]>(); Color[] dataColor = new Color[] { Color.WHITE, new Color(0, 153, 0), new Color(0, 229, 132), stableColor, new Color(247, 119, 119), new Color(204, 0, 0), Color.WHITE }; double[] tempWidthValue = new double[8]; double[] yAxisValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[] xAxisValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[] widthValueI = new double[] { 0, 0, 0, 0, 0, 0, 0 }; double[][] seriesValuesI = { yAxisValueI, xAxisValueI, widthValueI }; seriousColorMap.put(0, new Color[] { Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE, Color.WHITE }); defaultxyzdataset.addSeries(" ", seriesValuesI); for (String key : userCustomizedComparison.getComparProtsMap().keySet()) { userCustomizedComparison.getComparProtsMap().get(key).updateLabelLayout(); { tempWidthValue[userCustomizedComparison.getComparProtsMap().get(key).getSignificantTrindCategory() + 1] = tempWidthValue[userCustomizedComparison.getComparProtsMap().get(key) .getSignificantTrindCategory() + 1] + 1; } } int length = 0; if (upper < 10) { upper = 10; } double[] tooltipNumbess = new double[tempWidthValue.length]; System.arraycopy(tempWidthValue, 0, tooltipNumbess, 0, tempWidthValue.length); this.tooltipsProtNumberMap.put(userCustomizedComparison.getComparisonHeader(), tooltipNumbess); for (int z = 0; z < tempWidthValue.length; z++) { if (tempWidthValue[z] > 0) { tempWidthValue[z] = scaleValues(tempWidthValue[z], upper, 2.5, 0.05);//Math.max(tempWidthValue[z] * 1.5 / upper, 0.05); length++; } } double[] yAxisValue = new double[length]; double[] xAxisValue = new double[length]; double[] widthValue = new double[length]; Color[] serColorArr = new Color[length]; length = 0; for (int z = 0; z < tempWidthValue.length; z++) { if (tempWidthValue[z] > 0) { xAxisValue[length] = z; yAxisValue[length] = counter + 1; widthValue[length] = tempWidthValue[z]; serColorArr[length] = dataColor[z]; length++; } } if (length == 1 && selectedComparisonList.size() == 1) { widthValue[0] = 1; } seriousColorMap.put(++counter, serColorArr); double[][] seriesValues = { yAxisValue, xAxisValue, widthValue }; defaultxyzdataset.addSeries(userCustomizedComparison.getComparisonHeader(), seriesValues); for (QuantDiseaseGroupsComparison qc : selectedComparisonList) { tempWidthValue = new double[8]; if (qc.getComparProtsMap() == null) { continue; } for (String key : qc.getComparProtsMap().keySet()) { qc.getComparProtsMap().get(key).updateLabelLayout(); if (significantOnly && (qc.getComparProtsMap().get(key).getSignificantTrindCategory() == 2 || qc.getComparProtsMap().get(key).getSignificantTrindCategory() == 5)) { tempWidthValue[3] = 0; tempWidthValue[6] = 0; } else { tempWidthValue[qc.getComparProtsMap().get(key).getSignificantTrindCategory() + 1] = tempWidthValue[qc.getComparProtsMap().get(key).getSignificantTrindCategory() + 1] + 1; } } if (tempWidthValue[3] > 0 && tempWidthValue[6] >= 0) { stableColor = new Color(1, 141, 244); } else { stableColor = Color.decode("#b5babb"); } tempWidthValue[3] = tempWidthValue[3] + tempWidthValue[6]; tempWidthValue[6] = 0; dataColor[3] = stableColor; length = 0; if (upper < 10) { upper = 10; } tooltipNumbess = new double[tempWidthValue.length]; System.arraycopy(tempWidthValue, 0, tooltipNumbess, 0, tempWidthValue.length); this.tooltipsProtNumberMap.put(qc.getComparisonHeader(), tooltipNumbess); for (int x = 0; x < tempWidthValue.length; x++) { if (tempWidthValue[x] > 0) { tempWidthValue[x] = scaleValues(tempWidthValue[x], upper, 2.5, 0.05);//Math.max(tempWidthValue[z] * 1.5 / upper, 0.05); length++; } } yAxisValue = new double[length]; xAxisValue = new double[length]; widthValue = new double[length]; serColorArr = new Color[length]; length = 0; for (int x = 0; x < tempWidthValue.length; x++) { if (tempWidthValue[x] > 0) { xAxisValue[length] = x; yAxisValue[length] = counter + 1; widthValue[length] = tempWidthValue[x]; serColorArr[length] = dataColor[x]; length++; } } if (length == 1 && selectedComparisonList.size() == 1) { widthValue[0] = 1; } seriousColorMap.put(counter + 1, serColorArr); seriesValues = new double[][] { yAxisValue, xAxisValue, widthValue }; defaultxyzdataset.addSeries(qc.getComparisonHeader(), seriesValues); counter++; } double[] yAxisValueII = new double[0]; double[] xAxisValueII = new double[0]; double[] widthValueII = new double[0]; seriousColorMap.put(counter + 1, new Color[] {}); double[][] seriesValuesII = { yAxisValueII, xAxisValueII, widthValueII }; defaultxyzdataset.addSeries(" ", seriesValuesII); final Color[] labelsColor = new Color[] { Color.WHITE, new Color(80, 183, 71), Color.LIGHT_GRAY, new Color(1, 141, 244), Color.LIGHT_GRAY, new Color(204, 0, 0), Color.WHITE }; Font font = new Font("Verdana", Font.BOLD, 13); SymbolAxis yAxis = new SymbolAxis(null, new String[] { " ", "Decreased", " ", "Equal", " ", "Increased", " " }) { int x = 0; @Override public Paint getTickLabelPaint() { if (x >= labelsColor.length) { x = 0; } return labelsColor[x++]; } }; yAxis.setAutoRangeStickyZero(true); yAxis.setFixedAutoRange(8); yAxis.setTickLabelFont(font); yAxis.setGridBandsVisible(false); yAxis.setAxisLinePaint(Color.LIGHT_GRAY); yAxis.setTickMarksVisible(false); yAxis.setUpperBound(6); String[] xAxisLabels = new String[selectedComparisonList.size() + 3]; xAxisLabels[0] = " "; final Color[] diseaseGroupslabelsColor = new Color[selectedComparisonList.size() + 3]; int x = 0; int maxLength = -1; //init labels color String updatedHeader = userCustomizedComparison.getComparisonHeader().split(" / ")[0].split("\n")[0] + " / " + userCustomizedComparison.getComparisonHeader().split(" / ")[1].split("\n")[0] + ""; diseaseGroupslabelsColor[0] = Color.WHITE; diseaseGroupslabelsColor[x + 1] = diseaseColorMap.get("UserData"); xAxisLabels[x + 1] = updatedHeader + " (" + userCustomizedComparison.getDatasetIndexes().length + ") "; if (xAxisLabels[x + 1].length() > maxLength) { maxLength = xAxisLabels[++x].length(); } for (QuantDiseaseGroupsComparison comp : selectedComparisonList) { String header = comp.getComparisonHeader(); updatedHeader = header.split(" / ")[0].split("\n")[0] + " / " + header.split(" / ")[1].split("\n")[0] + ""; xAxisLabels[x + 1] = updatedHeader + " (" + comp.getDatasetIndexes().length + ") "; if (xAxisLabels[x + 1].length() > maxLength) { maxLength = xAxisLabels[x + 1].length(); } diseaseGroupslabelsColor[x + 1] = diseaseColorMap.get(header.split(" / ")[0].split("\n")[1]); x++; } xAxisLabels[x + 1] = " "; SymbolAxis xAxis; final boolean finalNum; finalNum = maxLength > 30 && selectedComparisonList.size() > 4; xAxis = new SymbolAxis(null, xAxisLabels) { int x = 0; @Override public Paint getTickLabelPaint() { if (x >= diseaseGroupslabelsColor.length) { x = 0; } return diseaseGroupslabelsColor[x++]; } private final boolean localfinal = finalNum; @Override protected List refreshTicksHorizontal(Graphics2D g2, Rectangle2D dataArea, RectangleEdge edge) { if (localfinal) { setVerticalTickLabels(localfinal); return super.refreshTicksHorizontal(g2, dataArea, edge); } List ticks = new java.util.ArrayList(); Font tickLabelFont = getTickLabelFont(); g2.setFont(tickLabelFont); double size = getTickUnit().getSize(); int count = calculateVisibleTickCount(); double lowestTickValue = calculateLowestVisibleTickValue(); double previousDrawnTickLabelPos = 0.0; double previousDrawnTickLabelLength = 0.0; if (count <= ValueAxis.MAXIMUM_TICK_COUNT) { for (int i = 0; i < count; i++) { double currentTickValue = lowestTickValue + (i * size); double xx = valueToJava2D(currentTickValue, dataArea, edge); String tickLabel; NumberFormat formatter = getNumberFormatOverride(); if (formatter != null) { tickLabel = formatter.format(currentTickValue) + " "; } else { tickLabel = valueToString(currentTickValue) + " "; } // avoid to draw overlapping tick labels Rectangle2D bounds = TextUtilities.getTextBounds(tickLabel, g2, g2.getFontMetrics()); double tickLabelLength = isVerticalTickLabels() ? bounds.getHeight() : bounds.getWidth(); boolean tickLabelsOverlapping = false; if (i > 0) { double avgTickLabelLength = (previousDrawnTickLabelLength + tickLabelLength) / 2.0; if (Math.abs(xx - previousDrawnTickLabelPos) < avgTickLabelLength) { tickLabelsOverlapping = true; } } if (tickLabelsOverlapping) { setVerticalTickLabels(true); } else { // remember these values for next comparison previousDrawnTickLabelPos = xx; previousDrawnTickLabelLength = tickLabelLength; } TextAnchor anchor; TextAnchor rotationAnchor; double angle = 0.0; if (isVerticalTickLabels()) { anchor = TextAnchor.CENTER_RIGHT; rotationAnchor = TextAnchor.CENTER_RIGHT; if (edge == RectangleEdge.TOP) { angle = 76.5; } else { angle = -76.5; } } else { if (edge == RectangleEdge.TOP) { anchor = TextAnchor.BOTTOM_CENTER; rotationAnchor = TextAnchor.BOTTOM_CENTER; } else { anchor = TextAnchor.TOP_CENTER; rotationAnchor = TextAnchor.TOP_CENTER; } } Tick tick = new NumberTick(new Double(currentTickValue), tickLabel, anchor, rotationAnchor, angle); ticks.add(tick); } } return ticks; } }; // } xAxis.setTickLabelFont(font); xAxis.setTickLabelInsets(new RectangleInsets(2, 20, 2, 20)); xAxis.setAutoRangeStickyZero(true); xAxis.setAutoRangeStickyZero(true); xAxis.setTickMarksVisible(false); xAxis.setUpperBound(diseaseGroupslabelsColor.length - 1); xAxis.setGridBandsVisible(false); xAxis.setAxisLinePaint(Color.LIGHT_GRAY); int scale = XYBubbleRenderer.SCALE_ON_RANGE_AXIS; XYItemRenderer xyitemrenderer = new XYBubbleRenderer(scale) { private int counter = 0; private int localSerious = -1; private final Map<Integer, Color[]> localSeriousColorMap = seriousColorMap; @Override public Paint getSeriesPaint(int series) { if (series != localSerious || isNewImge || localSeriousColorMap.get(series).length == counter) { counter = 0; isNewImge = false; } localSerious = series; Color c = localSeriousColorMap.get(series)[counter]; counter++; return c; } }; XYPlot xyplot = new XYPlot(defaultxyzdataset, xAxis, yAxis, xyitemrenderer) { @Override protected void drawRangeGridlines(Graphics2D g2, Rectangle2D area, List ticks) { try { if (!ticks.isEmpty()) { ticks.remove(0); } if (!ticks.isEmpty()) { ticks.remove(ticks.size() - 1); } } catch (Exception e) { } super.drawRangeGridlines(g2, area, ticks); //To change body of generated methods, choose Tools | Templates. } // private final Color[] labelsColor = new Color[]{new Color(0, 153, 0), new Color(0, 229, 132), new Color(1, 141, 244), new Color(255, 51, 51), new Color(204, 0, 0), Color.decode("#b5babb")}; // // private final Font font = new Font("Verdana", Font.PLAIN, 12); // private final String[] labels = new String[]{"Decreased 100%", "Decreased <100% ", "Equal", " Increased <100%", "Increased 100%", "No Quant. Info."}; // // @Override // public LegendItemCollection getLegendItems() { // LegendItemCollection legendItemCollection = new LegendItemCollection(); // for (int i = 0; i < labelsColor.length; i++) { // LegendItem item = new LegendItem(labels[i], labelsColor[i]); // item.setLabelFont(font); // legendItemCollection.add(item); // // } // // return legendItemCollection;//To change body of generated methods, choose Tools | Templates. // } }; JFreeChart generatedChart = new JFreeChart(xyplot) { }; xyplot.setOutlineVisible(false); LegendTitle legend = generatedChart.getLegend(); legend.setVisible(false); xyplot.setBackgroundPaint(Color.WHITE); generatedChart.setBackgroundPaint(Color.WHITE); generatedChart.setPadding(new RectangleInsets(0, 0, 0, 0)); Quant_Central_Manager.setProteinsOverviewBubbleChart(generatedChart); return generatedChart; }