List of usage examples for org.jfree.chart.axis ValueAxis setRange
public void setRange(double lower, double upper)
From source file:apidemo.PanScrollZoomDemo.java
/** * Handles a {@link ChangeEvent} (in this case, coming from the scrollbar). * //from w w w . j a v a 2 s . c o m * @param event the event. */ public void stateChanged(final ChangeEvent event) { try { final Object src = event.getSource(); final BoundedRangeModel scrollBarModel = this.scrollBar.getModel(); if (src == scrollBarModel) { final int val = scrollBarModel.getValue(); final int ext = scrollBarModel.getExtent(); final Plot plot = this.chartPanel.getChart().getPlot(); if (plot instanceof XYPlot) { final XYPlot hvp = (XYPlot) plot; final ValueAxis axis = hvp.getDomainAxis(); // avoid problems this.chartPanel.getChart().removeChangeListener(this); axis.setRange(val / this.scrollFactor, (val + ext) / this.scrollFactor); // restore chart listener this.chartPanel.getChart().addChangeListener(this); } } } catch (Exception e) { e.printStackTrace(); } }
From source file:charts.Chart.java
public static void StepChart(CategoryDataset dataset, String title, String x_axis_label, String y_axis_label, boolean showlegend, float maxvalue, float minvalue) { JFrame chartwindow = new JFrame(title); CategoryItemRenderer renderer = new CategoryStepRenderer(true); CategoryAxis domainAxis = new CategoryAxis(x_axis_label); ValueAxis rangeAxis = new NumberAxis(y_axis_label); CategoryPlot categoryplot = new CategoryPlot(dataset, domainAxis, rangeAxis, renderer); JFreeChart jfreechart = new JFreeChart(title, categoryplot); categoryplot.setBackgroundPaint(Color.white); categoryplot.setRangeGridlinePaint(Color.black); //NumberAxis numberaxis = (NumberAxis)categoryplot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); if (minvalue == 0 && maxvalue == 0) { rangeAxis.setAutoRange(true);/* w w w . ja v a 2 s . c om*/ } else { rangeAxis.setRange(minvalue, maxvalue); } JPanel jpanel = new ChartPanel(jfreechart); jpanel.setPreferredSize(new Dimension(defaultwidth, defaultheight)); chartwindow.setContentPane(jpanel); chartwindow.pack(); RefineryUtilities.centerFrameOnScreen(chartwindow); chartwindow.setVisible(true); }
From source file:mil.tatrc.physiology.utilities.csv.plots.ActionEventPlotter.java
public void createGraph(PlotJob job, List<List<Double>> timeData, List<List<Double>> data, List<LogEvent> events, List<SEAction> actions) { CSVPlotTool plotTool = new CSVPlotTool(); //to leverage existing functions String title = job.name + "_"; XYSeriesCollection dataSet = new XYSeriesCollection(); double maxY = 0; double minY = Double.MAX_VALUE; for (int i = 0; i < timeData.size(); i++) { if (timeData.get(i) == null || data.get(i) == null) { job.bgColor = Color.white; //This hits when we have Expected data but NOT computed data continue; }/*from w ww . ja v a 2s . co m*/ title = title + job.headers.get(i) + "_"; XYSeries dataSeries; if (job.isComparePlot) { if (timeData.size() > 1) dataSeries = plotTool.createXYSeries(i == 0 ? "Expected" : "Computed", timeData.get(i), data.get(i)); else //If we're comparing but only have one data list, expected is missing, so rename to computed { dataSeries = plotTool.createXYSeries("Computed", timeData.get(i), data.get(i)); } } else dataSeries = plotTool.createXYSeries(job.headers.get(i), timeData.get(i), data.get(i)); dataSet.addSeries(dataSeries); maxY = maxY < dataSeries.getMaxY() ? dataSeries.getMaxY() : maxY; minY = minY > dataSeries.getMinY() ? dataSeries.getMinY() : minY; } title = title + "vs_Time_Action_Event_Plot"; //Override the constructed title if desired (usually for compare plots) if (job.titleOverride != null && !job.titleOverride.isEmpty() && !job.titleOverride.equalsIgnoreCase("None")) title = job.titleOverride; double rangeLength = maxY - minY; if (Math.abs(rangeLength) < 1e-6) { rangeLength = .01; } class AEEntry implements Comparable<AEEntry> { public String name; public List<Double> times = new ArrayList<Double>(); public List<Double> YVals = new ArrayList<Double>(); public String type = ""; public int compareTo(AEEntry entry) { return times.get(0) < entry.times.get(0) ? -1 : times.get(0) > entry.times.get(0) ? 1 : 0; } } List<AEEntry> allActionsAndEvents = new ArrayList<AEEntry>(); if (!job.skipAllEvents) { //Make points for each event //Treat each event like two points on the same vertical line for (LogEvent event : events) { boolean skip = false; for (String eventToSkip : job.eventOmissions) { if (event.text.contains(eventToSkip)) skip = true; } if (skip) continue; AEEntry entry = new AEEntry(); entry.times.add(event.time.getValue()); if (job.logAxis) entry.YVals.add(maxY); else if (job.forceZeroYAxisBound && maxY < 0) entry.YVals.add(-.01); else entry.YVals.add(maxY + 0.15 * rangeLength); entry.times.add(event.time.getValue()); if (job.logAxis) entry.YVals.add(minY); else if (job.forceZeroYAxisBound && minY > 0) entry.YVals.add(-.01); else entry.YVals.add(minY - 0.15 * rangeLength); entry.name = event.text + "\r\nt=" + event.time.getValue(); entry.type = "EVENT:"; allActionsAndEvents.add(entry); } } if (!job.skipAllActions) { //Make similar entries for actions for (SEAction action : actions) { boolean skip = false; for (String actionToSkip : job.actionOmissions) { if (action.toString().contains(actionToSkip)) skip = true; } if (skip) continue; if (action.toString().contains("Advance Time")) continue; AEEntry entry = new AEEntry(); entry.times.add(action.getScenarioTime().getValue()); if (job.logAxis) entry.YVals.add(maxY); else if (job.forceZeroYAxisBound && maxY < 0) entry.YVals.add(-.01); else entry.YVals.add(maxY + 0.15 * rangeLength); entry.times.add(action.getScenarioTime().getValue()); if (job.logAxis) entry.YVals.add(minY); else if (job.forceZeroYAxisBound && minY > 0) entry.YVals.add(-.01); else entry.YVals.add(minY - 0.15 * rangeLength); entry.name = action.toString() + "\r\nt=" + action.getScenarioTime().getValue(); entry.type = "ACTION:"; allActionsAndEvents.add(entry); } } //Sort the list Collections.sort(allActionsAndEvents); //Add a series for each entry for (AEEntry entry : allActionsAndEvents) { dataSet.addSeries(plotTool.createXYSeries(entry.type + entry.name, entry.times, entry.YVals)); } //If we have experimental data, try to load it and create a dataset for it XYSeriesCollection expDataSet = new XYSeriesCollection(); if (job.experimentalData != null && !job.experimentalData.isEmpty()) { Map<String, List<Double>> expData = new HashMap<String, List<Double>>(); List<String> expHeaders = new ArrayList<String>(); try { CSVContents csv = new CSVContents(job.experimentalData); csv.abbreviateContents = 0; csv.readAll(expData); expHeaders = csv.getHeaders(); } catch (Exception e) { Log.error("Unable to read experimental data"); } if (!expData.isEmpty() && !expHeaders.isEmpty()) { List<Double> expTimeData = new ArrayList<Double>(); expTimeData = expData.get("Time(s)"); for (String h : expHeaders) //Will assume all headers from exp file will be on same Y axis vs time { if (h.equalsIgnoreCase("Time(s)")) continue; expDataSet.addSeries(plotTool.createXYSeries("Experimental " + h, expTimeData, expData.get(h))); } } } //set labels String XAxisLabel = "Time(s)"; String YAxisLabel = job.headers.get(0); JFreeChart chart = ChartFactory.createXYLineChart( job.titleOverride != null && job.titleOverride.equalsIgnoreCase("None") ? "" : title, // chart title XAxisLabel, // x axis label YAxisLabel, // y axis label dataSet, // data PlotOrientation.VERTICAL, // orientation true, // include legend true, // tooltips false // urls ); Log.info("Creating Graph " + title); XYPlot plot = (XYPlot) chart.getPlot(); if (!job.logAxis) { // Determine Y range double resMax0 = maxY; double resMin0 = minY; if (Double.isNaN(resMax0) || Double.isNaN(resMin0)) plot.getDomainAxis().setLabel("Range is NaN"); if (DoubleUtils.isZero(resMin0)) resMin0 = -0.000001; if (DoubleUtils.isZero(resMax0)) resMax0 = 0.000001; if (job.forceZeroYAxisBound && resMin0 >= 0) resMin0 = -.000001; if (job.forceZeroYAxisBound && resMax0 <= 0) resMax0 = .000001; rangeLength = resMax0 - resMin0; ValueAxis yAxis = plot.getRangeAxis(); if (rangeLength != 0) yAxis.setRange(resMin0 - 0.15 * rangeLength, resMax0 + 0.15 * rangeLength);//15% buffer so we can see top and bottom clearly //Add another Y axis to the right side for easier reading ValueAxis rightYAxis = new NumberAxis(); rightYAxis.setRange(yAxis.getRange()); rightYAxis.setLabel(""); //Override the bounds if desired try { if (job.Y1LowerBound != null) { yAxis.setLowerBound(job.Y1LowerBound); rightYAxis.setLowerBound(job.Y1LowerBound); } if (job.Y1UpperBound != null) { yAxis.setUpperBound(job.Y1UpperBound); rightYAxis.setUpperBound(job.Y1UpperBound); } } catch (Exception e) { Log.error( "Couldn't set Y bounds. You probably tried to set a bound on an axis that doesn't exist."); } plot.setRangeAxis(0, yAxis); plot.setRangeAxis(1, rightYAxis); } else { double resMin = minY; double resMax = maxY; if (resMin <= 0.0) resMin = .00001; LogarithmicAxis yAxis = new LogarithmicAxis("Log(" + YAxisLabel + ")"); LogarithmicAxis rightYAxis = new LogarithmicAxis(""); yAxis.setLowerBound(resMin); rightYAxis.setLowerBound(resMin); yAxis.setUpperBound(resMax); rightYAxis.setUpperBound(resMax); //Override the bounds if desired try { if (job.Y1LowerBound != null) { yAxis.setLowerBound(job.Y1LowerBound); rightYAxis.setLowerBound(job.Y1LowerBound); } if (job.Y1UpperBound != null) { yAxis.setUpperBound(job.Y1UpperBound); rightYAxis.setUpperBound(job.Y1UpperBound); } } catch (Exception e) { Log.error( "Couldn't set Y bounds. You probably tried to set a bound on an axis that doesn't exist."); } plot.setRangeAxis(0, yAxis); plot.setRangeAxis(1, rightYAxis); } //Override X bounds if desired try { if (job.X1LowerBound != null) plot.getDomainAxis(0).setLowerBound(job.X1LowerBound); if (job.X1UpperBound != null) plot.getDomainAxis(0).setUpperBound(job.X1UpperBound); } catch (Exception e) { Log.error("Couldn't set X bounds. You probably tried to set a bound on an axis that doesn't exist."); } //Override labels if desired if (job.X1Label != null && !plot.getDomainAxis(0).getLabel().contains("NaN")) plot.getDomainAxis(0).setLabel(job.X1Label.equalsIgnoreCase("None") ? "" : job.X1Label); if (job.Y1Label != null) plot.getRangeAxis(0).setLabel(job.Y1Label.equalsIgnoreCase("None") ? "" : job.Y1Label); //If we have experimental data, set up the renderer for it and add to plot if (expDataSet.getSeriesCount() != 0) { XYItemRenderer renderer1 = new XYLineAndShapeRenderer(false, true); // Shapes only renderer1.setSeriesShape(0, ShapeUtilities.createDiamond(8)); plot.setDataset(1, expDataSet); plot.setRenderer(1, renderer1); plot.mapDatasetToDomainAxis(1, 0); plot.mapDatasetToRangeAxis(1, 0); } formatAEPlot(job, chart); plot.setDomainGridlinesVisible(job.showGridLines); plot.setRangeGridlinesVisible(job.showGridLines); //Changing line widths and colors XYItemRenderer r = plot.getRenderer(); BasicStroke wideLine = new BasicStroke(2.0f); Color[] AEcolors = { Color.red, Color.green, Color.black, Color.magenta, Color.orange }; Color[] dataColors = { Color.blue, Color.cyan, Color.gray, Color.black, Color.red }; for (int i = 0, cIndex = 0; i < dataSet.getSeriesCount(); i++, cIndex++) { r.setSeriesStroke(i, wideLine); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(false); if (cIndex > 4) cIndex = 0; if (i < job.headers.size()) //Our actual data { renderer.setSeriesFillPaint(i, dataColors[cIndex]); renderer.setSeriesPaint(i, dataColors[cIndex]); } else //actions and events in procession of other colors { renderer.setSeriesFillPaint(i, AEcolors[cIndex]); renderer.setSeriesPaint(i, AEcolors[cIndex]); } } //Special color and format changes for compare plots if (job.isComparePlot) { XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); for (int i = 0; i < dataSet.getSeriesCount(); i++) { if (dataSet.getSeries(i).getKey().toString().equalsIgnoreCase("Expected")) { renderer.setSeriesStroke(//makes a dashed line i, //argument below float[]{I,K} -> alternates between solid and opaque (solid for I, opaque for K) new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 15.0f, 30.0f }, 0.0f)); renderer.setDrawSeriesLineAsPath(true); renderer.setUseFillPaint(true); renderer.setBaseShapesVisible(false); renderer.setSeriesFillPaint(i, Color.black); renderer.setSeriesPaint(i, Color.black); } if (dataSet.getSeries(i).getKey().toString().equalsIgnoreCase("Computed")) { renderer.setSeriesFillPaint(i, Color.red); renderer.setSeriesPaint(i, Color.red); } if (dataSet.getSeries(i).getKey().toString().startsWith("ACTION")) { renderer.setSeriesFillPaint(i, Color.green); renderer.setSeriesPaint(i, Color.green); } if (dataSet.getSeries(i).getKey().toString().startsWith("EVENT")) { renderer.setSeriesFillPaint(i, Color.blue); renderer.setSeriesPaint(i, Color.blue); } } } //Split the auto-generated legend into two legends, one for data and one for actions and events LegendItemCollection originalLegendCollection = plot.getLegendItems(); final LegendItemCollection dataLegendCollection = new LegendItemCollection(); int i; for (i = 0; i < job.headers.size() && i < originalLegendCollection.getItemCount(); i++) { if (originalLegendCollection.get(i).getLabel().startsWith("ACTION") || originalLegendCollection.get(i).getLabel().startsWith("EVENT")) break; dataLegendCollection.add(originalLegendCollection.get(i)); } final LegendItemCollection remainingLegendCollection = new LegendItemCollection(); for (; i < originalLegendCollection.getItemCount(); i++) { remainingLegendCollection.add(originalLegendCollection.get(i)); } chart.removeLegend(); LegendItemSource source = new LegendItemSource() { LegendItemCollection lic = new LegendItemCollection(); { lic.addAll(dataLegendCollection); } public LegendItemCollection getLegendItems() { return lic; } }; LegendTitle dataLegend = new LegendTitle(source); dataLegend.setMargin(new RectangleInsets(1.0, 1.0, 1.0, 1.0)); dataLegend.setBorder(2, 2, 2, 2); dataLegend.setBackgroundPaint(Color.white); dataLegend.setPosition(RectangleEdge.TOP); dataLegend.setItemFont(new Font("SansSerif", Font.PLAIN, 22)); chart.addLegend(dataLegend); source = new LegendItemSource() { LegendItemCollection lic = new LegendItemCollection(); { lic.addAll(remainingLegendCollection); } public LegendItemCollection getLegendItems() { return lic; } }; LegendTitle actionEventsLegend = new LegendTitle(source); actionEventsLegend.setMargin(new RectangleInsets(1.0, 1.0, 1.0, 1.0)); actionEventsLegend.setBorder(2, 2, 2, 2); actionEventsLegend.setBackgroundPaint(Color.white); actionEventsLegend.setPosition(RectangleEdge.BOTTOM); actionEventsLegend.setItemFont(new Font("SansSerif", Font.PLAIN, 22)); if (!job.hideAELegend && !job.removeAllLegends) chart.addLegend(actionEventsLegend); if (job.removeAllLegends) chart.removeLegend(); int verticalPixels = 800 + 170 * (allActionsAndEvents.size() / 5); //This is a little hacky, but if we want only the legend, just extend Plot() and remove the draw functionality so it makes a blank plot class legendPlot extends Plot { public void draw(Graphics2D arg0, Rectangle2D arg1, Point2D arg2, PlotState arg3, PlotRenderingInfo arg4) { } public String getPlotType() { return null; } } //Then add the legend to that and throw away the original plot if (job.legendOnly) { chart = new JFreeChart("", null, new legendPlot(), false); chart.addLegend(actionEventsLegend); } try { FileUtils.createDirectory(job.outputDir); String filename = job.outputFilename == null ? job.outputDir + "/" + plotTool.MakeFileName(title) + ".jpg" : job.outputDir + "/" + job.outputFilename; if (!filename.endsWith(".jpg")) filename = filename + ".jpg"; File JPGFile = new File(filename); if (job.imageHeight != null && job.imageWidth != null) ChartUtilities.saveChartAsJPEG(JPGFile, chart, job.imageWidth, job.imageHeight); else if (!job.hideAELegend && !job.removeAllLegends) ChartUtilities.saveChartAsJPEG(JPGFile, chart, 1600, verticalPixels); else ChartUtilities.saveChartAsJPEG(JPGFile, chart, 1600, 800); } catch (IOException e) { Log.error(e.getMessage()); } }
From source file:org.gumtree.vis.core.internal.SWTChartComposite.java
@Override public void restoreAutoRangeBounds() { ValueAxis rangeAxis = getChart().getXYPlot().getRangeAxis(); if (rangeAxis instanceof LogarithmicAxis) { super.restoreAutoRangeBounds(); } else {/*from w w w. j a v a2s .co m*/ double marginRate = 0.05; // double upperRange = getChart().getXYPlot().getRangeAxis().getUpperBound(); // double lowerRange = getChart().getXYPlot().getRangeAxis().getLowerBound(); double margin = (rangeUpperBound - rangeLowerBound) * marginRate; // double margin = Math.abs(getChart().getXYPlot().getDataset() - rangeAxis.getLowerBound()) * marginRate; rangeAxis.setRange(rangeLowerBound - margin, rangeUpperBound + margin); } }
From source file:net.sf.maltcms.chromaui.chromatogram1Dviewer.ui.panel.Chromatogram1DHeatmapViewerPanel.java
private void setViewPortAround(final double value) { Runnable r = new Runnable() { @Override//from w w w .j a va 2s . co m public void run() { double value2 = value / 100.0d; System.out.println("ViewPort around " + value2); Range dataDomainBounds = DatasetUtilities .findDomainBounds(chartPanel.getChart().getXYPlot().getDataset()); ValueAxis domainAxis = chartPanel.getChart().getXYPlot().getDomainAxis(); double lowerBound = Math.max(dataDomainBounds.getLowerBound(), dataDomainBounds.getLowerBound() + (value / 99.0d * dataDomainBounds.getLength())); double upperBound = Math.min(dataDomainBounds.getUpperBound(), dataDomainBounds.getLowerBound() + ((value + 10.0d) / 99.0d * dataDomainBounds.getLength())); domainAxis.setRange(lowerBound, upperBound); } }; SwingUtilities.invokeLater(r); }
From source file:ubic.gemma.web.controller.expression.experiment.ExpressionExperimentQCController.java
/** * @param os response output stream/* ww w.j a v a 2s .co m*/ * @param mvr MeanVarianceRelation object to plot * @return true if mvr data points were plotted */ private boolean writeMeanVariance(OutputStream os, MeanVarianceRelation mvr, Double size) throws Exception { // if number of datapoints > THRESHOLD then alpha = TRANSLUCENT, else alpha = OPAQUE final int THRESHOLD = 1000; final int TRANSLUCENT = 50; final int OPAQUE = 255; // Set maximum plot range to Y_MAX + YRANGE * OFFSET to leave some extra white space final double OFFSET_FACTOR = 0.05f; // set the final image size to be the minimum of MAX_IMAGE_SIZE_PX or size final int MAX_IMAGE_SIZE_PX = 5; if (mvr == null) { return false; } // get data points XYSeriesCollection collection = this.getMeanVariance(mvr); if (collection.getSeries().size() == 0) { return false; } ChartFactory.setChartTheme(StandardChartTheme.createLegacyTheme()); JFreeChart chart = ChartFactory.createScatterPlot("", "mean (log2)", "variance (log2)", collection, PlotOrientation.VERTICAL, false, false, false); // adjust colors and shapes XYRegressionRenderer renderer = new XYRegressionRenderer(); renderer.setBasePaint(Color.white); XYSeries series = collection.getSeries(0); int alpha = series.getItemCount() > THRESHOLD ? TRANSLUCENT : OPAQUE; renderer.setSeriesPaint(0, new Color(0, 0, 0, alpha)); renderer.setSeriesPaint(1, Color.red); renderer.setSeriesStroke(1, new BasicStroke(1)); renderer.setSeriesShape(0, new Ellipse2D.Double(4, 4, 4, 4)); renderer.setSeriesShapesFilled(0, false); renderer.setSeriesLinesVisible(0, false); renderer.setSeriesLinesVisible(1, true); renderer.setSeriesShapesVisible(1, false); XYPlot plot = chart.getXYPlot(); plot.setRenderer(renderer); plot.setRangeGridlinesVisible(false); plot.setDomainGridlinesVisible(false); // adjust the chart domain and ranges double yRange = series.getMaxY() - series.getMinY(); double xRange = series.getMaxX() - series.getMinX(); if (xRange < 0) { log.warn("Min X was greater than Max X: Max=" + series.getMaxY() + " Min= " + series.getMinY()); return false; } double ybuffer = (yRange) * OFFSET_FACTOR; double xbuffer = (xRange) * OFFSET_FACTOR; double newYMin = series.getMinY() - ybuffer; double newYMax = series.getMaxY() + ybuffer; double newXMin = series.getMinX() - xbuffer; double newXMax = series.getMaxX() + xbuffer; ValueAxis yAxis = new NumberAxis("Variance"); yAxis.setRange(newYMin, newYMax); ValueAxis xAxis = new NumberAxis("Mean"); xAxis.setRange(newXMin, newXMax); chart.getXYPlot().setRangeAxis(yAxis); chart.getXYPlot().setDomainAxis(xAxis); int finalSize = (int) Math.min( MAX_IMAGE_SIZE_PX * ExpressionExperimentQCController.DEFAULT_QC_IMAGE_SIZE_PX, size * ExpressionExperimentQCController.DEFAULT_QC_IMAGE_SIZE_PX); ChartUtilities.writeChartAsPNG(os, chart, finalSize, finalSize); return true; }
From source file:Main.Interface_Main.java
private JFreeChart createChartDp(final XYDataset dataset) { final JFreeChart result = ChartFactory.createTimeSeriesChart("D+", "Time", "Volts", dataset, false, true, false);/*from ww w . j ava 2 s . co m*/ final XYPlot plot = result.getXYPlot(); XYItemRenderer xyir = plot.getRenderer(); xyir.setSeriesPaint(0, Color.GREEN); plot.setBackgroundPaint(Color.BLACK); ValueAxis axis = plot.getDomainAxis(); axis.setAutoRange(true); axis = plot.getRangeAxis(); axis.setRange(0.0, 5.2); return result; }
From source file:Main.Interface_Main.java
private JFreeChart createChartDm(final XYDataset dataset) { final JFreeChart result = ChartFactory.createTimeSeriesChart("D-", "Time", "Volts", dataset, false, true, false);// w ww . j a va 2s. c o m final XYPlot plot = result.getXYPlot(); XYItemRenderer xyir = plot.getRenderer(); xyir.setSeriesPaint(0, Color.GREEN); plot.setBackgroundPaint(Color.BLACK); ValueAxis axis = plot.getDomainAxis(); axis.setAutoRange(true); axis = plot.getRangeAxis(); axis.setRange(0.0, 5.2); return result; }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.ProteinStudyComparisonScatterPlotLayout.java
/** * Creates a sample jFreeChart.// www . j av a 2 s .c o m * * @param dataset the dataset. * * @return The jFreeChart. */ private void generateScatterplotchart(DiseaseGroupsComparisonsProteinLayout cp, int w, int h) { final XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries downSer = new XYSeries(0); XYSeries stableSer = new XYSeries(1); XYSeries upSer = new XYSeries(2); XYSeries novalueProvidedSer = new XYSeries(3); XYSeries downSerII = new XYSeries(4); XYSeries stableSerII = new XYSeries(5); XYSeries upSerII = new XYSeries(6); XYSeries novalueProvidedSerII = new XYSeries(7); // XYSeries plusSeries = new XYSeries(6); double downCounter = 1; double stableCounter = 3; double upCounter = 5; double novalueProvidedCounter = 3; patientGroupsNumToDsIdMap.clear(); final Map<Integer, int[]> paTGrNumbtrendMap = new HashMap<Integer, int[]>(); double maxPatNumber = -1.0; for (String protTrend : cp.getPatientsNumToTrindMap().keySet()) { List<Integer> patNums = cp.getPatientsNumToTrindMap().get(protTrend); int coun = 0; for (int i : patNums) { if (i > maxPatNumber) { maxPatNumber = i; } if (!patientGroupsNumToDsIdMap.containsKey(i)) { ComparisonDetailsBean pGr = new ComparisonDetailsBean(); patientGroupsNumToDsIdMap.put(i, pGr); } if (!paTGrNumbtrendMap.containsKey(i)) { int[] values = new int[4]; paTGrNumbtrendMap.put(i, values); } int[] values = paTGrNumbtrendMap.get(i); ComparisonDetailsBean pGr = patientGroupsNumToDsIdMap.get(i); if (protTrend.equalsIgnoreCase("noValueProvided")) { values[3] = values[3] + 1; pGr.addNovalueProvided(cp.getDSID(3, coun)); } else if (protTrend.equalsIgnoreCase("up")) { values[2] = values[2] + 1; pGr.addUpRegulated(cp.getDSID(0, coun)); } else if (protTrend.equalsIgnoreCase("down")) { values[0] = values[0] + 1; pGr.addDownRegulated(cp.getDSID(2, coun)); } else { values[1] = values[1] + 1; pGr.addNotRegulated(cp.getDSID(1, coun)); } paTGrNumbtrendMap.put(i, values); patientGroupsNumToDsIdMap.put(i, pGr); coun++; } } for (int i : paTGrNumbtrendMap.keySet()) { int[] values = paTGrNumbtrendMap.get(i); if ((values[2] > 1)) { upSer.add(upCounter, i); upSerII.add(upCounter, i); } else if ((values[2] == 1)) { upSer.add(upCounter, i); } if ((values[1] == 1)) { stableSer.add(stableCounter, i); } else if ((values[1] > 1)) { stableSer.add(stableCounter, i); stableSerII.add(stableCounter, i); } if ((values[0] > 1)) { downSer.add(downCounter, i); downSerII.add(downCounter, i); } else if ((values[0] == 1)) { downSer.add(downCounter, i); } if ((values[3] == 1)) { novalueProvidedSer.add(novalueProvidedCounter, i); } else if ((values[3] > 1)) { novalueProvidedSer.add(stableCounter, i); novalueProvidedSerII.add(stableCounter, i); } } dataset.addSeries(downSer); dataset.addSeries(stableSer); dataset.addSeries(upSer); dataset.addSeries(novalueProvidedSer); dataset.addSeries(downSerII); dataset.addSeries(stableSerII); dataset.addSeries(upSerII); dataset.addSeries(novalueProvidedSerII); // if((downSerII.getItemCount()+stableSerII.getItemCount()+upSerII.getItemCount()+downSer.getItemCount()+stableSer.getItemCount()+upSer.getItemCount())==0) // return; // dataset.addSeries(plusSeries); final String[] labels = new String[] { " ", ("Decreased (" + cp.getSignificantDown() + ")"), " ", ("Equal (" + cp.getStable() + ")"), " ", ("Increased (" + cp.getSignificantUp() + ")"), "" }; final Color[] labelsColor = new Color[] { Color.LIGHT_GRAY, new Color(80, 183, 71), Color.LIGHT_GRAY, new Color(1, 141, 244), Color.LIGHT_GRAY, Color.RED, Color.LIGHT_GRAY }; final SymbolAxis domainAxis = new SymbolAxis("X", labels) { @Override protected void drawGridBandsVertical(Graphics2D g2, Rectangle2D drawArea, Rectangle2D plotArea, boolean firstGridBandIsDark, List ticks) { List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } // System.out.println("at ticks is "+ticks); // System.out.println("at udatedTicksList is "+udatedTicksList); // int factor = (int) ((plotArea.getHeight() / 5) * 0.25); // // Rectangle2D up = new Rectangle((int) drawArea.getX(), (int) drawArea.getY() - factor, (int) drawArea.getWidth(), (int) drawArea.getHeight()); // Rectangle2D pa = new Rectangle((int) plotArea.getX(), (int) plotArea.getY() - factor, (int) plotArea.getWidth(), (int) plotArea.getHeight()); super.drawGridBandsVertical(g2, drawArea, plotArea, firstGridBandIsDark, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } int x = 0; @Override public Paint getTickLabelPaint() { if (x >= labels.length) { x = 0; } return labelsColor[x++]; } }; domainAxis.setAutoRangeIncludesZero(false); Font f = new Font("Verdana", Font.PLAIN, 11); domainAxis.setTickLabelFont(f); domainAxis.setAutoRange(false); domainAxis.setLabel(null); // domainAxis.setGridBandsVisible(false); String xTile = "#Patients"; JFreeChart jFreeChart = ChartFactory.createScatterPlot(null, null, // domain axis label null, // range axis label dataset, // data PlotOrientation.HORIZONTAL, // orientation false, // include legend false, // tooltips? false // URLs? ); XYPlot plot1 = (XYPlot) jFreeChart.getPlot(); XYPlot xyplot = new XYPlot(dataset, plot1.getDomainAxis(), plot1.getRangeAxis(), plot1.getRenderer()) { @Override public void drawDomainTickBands(Graphics2D g2, Rectangle2D dataArea, List ticks) { if (custTrend == -1) { super.drawDomainTickBands(g2, dataArea, ticks); return; } List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } Rectangle2D up; int factor = (int) ((dataArea.getHeight() / 5) * 0.5); if (custTrend == 4) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() + factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else if (custTrend == 2) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } super.drawDomainTickBands(g2, up, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } @Override protected void drawDomainGridlines(Graphics2D g2, Rectangle2D dataArea, List ticks) { super.drawDomainGridlines(g2, dataArea, ticks); //To change body of generated methods, choose Tools | Templates. } private int x = 0; @Override public Paint getDomainGridlinePaint() { if (x >= labels.length) { x = 0; } if (x == 1 || x == 3 || x == 5) { x++; return Color.WHITE; } else { x++; return super.getDomainGridlinePaint(); //To change body of generated methods, choose Tools | Templates. } } }; if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(Color.white); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(Color.white); } } else { domainAxis.setGridBandsVisible(false); } xyplot.setOrientation(PlotOrientation.HORIZONTAL); JFreeChart tempScatterPlot = new JFreeChart(xyplot); tempScatterPlot.setBackgroundPaint(Color.WHITE); tempScatterPlot.getLegend().setVisible(false); Color c = new Color(242, 242, 242); xyplot.setDomainAxis(domainAxis); xyplot.setDomainGridlinePaint(Color.GRAY); xyplot.setDomainGridlinesVisible(true); xyplot.setRangeGridlinesVisible(true); xyplot.setRangeGridlinePaint(Color.GRAY); xyplot.setOutlinePaint(Color.GRAY); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) xyplot.getRenderer(); ValueAxis va = xyplot.getDomainAxis(); va.setAutoRange(false); va.setMinorTickCount(0); va.setVisible(true); maxPatNumber = Math.ceil(maxPatNumber / 100.0) * 100; xyplot.getRangeAxis().setRange(0, maxPatNumber); NumberAxis rangeAxis = (NumberAxis) xyplot.getRangeAxis(); rangeAxis.setTickUnit(new NumberTickUnit(10)); rangeAxis.setLabel(xTile); rangeAxis.setLabelFont(f); rangeAxis.setLabelPaint(Color.GRAY); va.setRange(0, 6); xyplot.setBackgroundPaint(Color.WHITE); renderer.setUseOutlinePaint(true); Color c0 = new Color(80, 183, 71); renderer.setSeriesPaint(0, c0); renderer.setSeriesOutlinePaint(0, Color.WHITE); Color c1 = new Color(1, 141, 244); renderer.setSeriesPaint(1, c1); renderer.setSeriesOutlinePaint(1, Color.WHITE); Color c2 = new Color(204, 0, 0); renderer.setSeriesPaint(2, c2); renderer.setSeriesOutlinePaint(2, Color.WHITE); renderer.setSeriesPaint(3, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(3, Color.WHITE); renderer.setSeriesPaint(4, new Color(150, 212, 145)); renderer.setSeriesOutlinePaint(4, new Color(150, 212, 145)); renderer.setSeriesPaint(5, new Color(103, 187, 248)); renderer.setSeriesOutlinePaint(5, new Color(103, 187, 248)); renderer.setSeriesPaint(6, new Color(224, 102, 102)); renderer.setSeriesOutlinePaint(6, new Color(224, 102, 102)); renderer.setSeriesPaint(7, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(7, Color.GRAY); // renderer.setSeriesPaint(6, Color.BLACK); // renderer.setSeriesOutlinePaint(6, Color.BLACK); Shape downArr = ShapeUtilities.createDownTriangle(7f); Shape notRShape = ShapeUtilities.createDiamond(7f); Shape upArr = ShapeUtilities.createUpTriangle(7); Shape downArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDownTriangle(6f), 5, -5); Shape notRShapeII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDiamond(6f), 0, -7); Shape upArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createUpTriangle(6f), 4, -4); // Shape plus = ShapeUtilities.createTranslatedShape(ShapeUtilities.createRegularCross(3f, 0.4f), 11, -7); renderer.setSeriesShape(0, downArr); renderer.setSeriesShape(1, notRShape); renderer.setSeriesShape(2, upArr); renderer.setSeriesShape(3, notRShape); renderer.setSeriesShape(4, downArrII); renderer.setSeriesShape(5, notRShapeII); renderer.setSeriesShape(6, upArrII); renderer.setSeriesShape(7, notRShapeII); // renderer.setSeriesShape(6, plus); renderer.setBaseItemLabelsVisible(true); renderer.setBaseItemLabelGenerator(new SymbolicXYItemLabelGenerator() { private final int[] indexer = new int[] { 0, 1, 2, 3, 0, 1, 2, 3 }; @Override public String generateLabel(XYDataset dataset, int series, int category) { if (series > 3) { int patNumber = (int) dataset.getYValue(series, category); // int trend = (int) dataset.getXValue(series, category); if (series == 7 || series == 5) { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } else { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } } return ""; //To change body of generated methods, choose Tools | Templates. } }); ItemLabelPosition position = new ItemLabelPosition(ItemLabelAnchor.OUTSIDE12, TextAnchor.BASELINE_LEFT, TextAnchor.TOP_LEFT, 0.0); renderer.setSeriesPositiveItemLabelPosition(4, position); renderer.setSeriesPositiveItemLabelPosition(5, position); renderer.setSeriesPositiveItemLabelPosition(6, position); renderer.setSeriesPositiveItemLabelPosition(7, position); renderer.setBaseItemLabelFont(f); tempScatterPlot.setBorderVisible(false); xyplot.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); heighlightedScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); xyplot.setBackgroundPaint(Color.WHITE); defaultScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); // xyplot.setBackgroundPaint(c); if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(c); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(c); } } String textTitle = comparisonTitle.getValue().split("bold;'>")[1].replace("</font>", ""); TextTitle title = new TextTitle(textTitle, f); scatterPlot = new JFreeChart(xyplot); scatterPlot.setTitle(title); scatterPlot.setBorderVisible(false); scatterPlot.setBackgroundPaint(Color.WHITE); scatterPlot.getLegend().setVisible(false); dsKeyDatasetMap.clear(); for (int i = 0; i < defaultScatterPlotRenderingInfo.getEntityCollection().getEntityCount(); i++) { final ChartEntity entity = defaultScatterPlotRenderingInfo.getEntityCollection().getEntity(i); if (entity instanceof XYItemEntity) { int x = ((XYItemEntity) entity).getSeriesIndex(); int y = ((XYItemEntity) entity).getItem(); if (((XYItemEntity) entity).getDataset().getYValue(x, y) > (int) ((XYItemEntity) entity).getDataset().getYValue(x, y)) { continue; } if (((XYItemEntity) entity).getSeriesIndex() > 3) { continue; } String[] arr = ((XYItemEntity) entity).getShapeCoords().split(","); int xSer = Integer.valueOf(arr[0]); int ySer = Integer.valueOf(arr[1]); int ySerEnd = Integer.valueOf(arr[3]); int patGrNumber = (int) ((XYItemEntity) entity).getDataset().getYValue(x, y); int trend = Integer.valueOf(((XYItemEntity) entity).getDataset() .getSeriesKey(((XYItemEntity) entity).getSeriesIndex()).toString()); ComparisonDetailsBean cpDetails = patientGroupsNumToDsIdMap.get(patGrNumber); List<Integer> dsList = cpDetails.getRegulatedList(trend); StringBuilder sb = new StringBuilder(); for (int dsId : dsList) { QuantDatasetObject ds; sb.append("<h4>").append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getAuthor()) .append(" ") .append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getYear()) .append("<h4/>"); sb.append("<p></p>"); ds = Quant_Central_Manager.getFullQuantDatasetMap().get(dsId); dsKeyDatasetMap.put("_-_" + dsId + "_-_" + comparisonProtein.getProteinAccssionNumber() + "_-_", ds); } String tooltip = sb.toString().substring(0, sb.toString().length() - 7); SquaredDot square = new SquaredDot("squared"); if (paTGrNumbtrendMap.get(patGrNumber)[trend] > 1) { square.setWidth(20 + "px"); square.setHeight(15 + "px"); } else { square.setWidth(10 + "px"); square.setHeight(10 + "px"); } square.setDescription(tooltip); square.setParam("trend", trend); square.setParam("pGrNumber", patGrNumber); int top = (ySer - 4); if (ySer > ySerEnd) { top = ySerEnd - 3; } defaultChartLayout.addComponent(square, "left: " + (xSer - 5) + "px; top: " + top + "px;"); } } }
From source file:velocitekProStartAnalyzer.MainWindow.java
private void createChartPanel() { XYSeriesCollection dataset = JDBCPointDao.dataSet; JFreeChart chart = createChart(dataset); ChartPanel chartPanel = new ChartPanel(chart, true, false, false, true, false); chartPanel.setMinimumDrawWidth(0);// ww w . ja v a2 s .co m chartPanel.setMinimumDrawHeight(0); chartPanel.setMaximumDrawWidth(1920); chartPanel.setMaximumDrawHeight(1200); chartPanel.getPopupMenu().addSeparator(); chartPanel.getPopupMenu().add(btnAvgSpeedChart); chartPanel.getPopupMenu().add(btnMedianSpeedChart); chartPanel.getPopupMenu().add(btnResetSpeedChart); chartPanel.getPopupMenu().addSeparator(); btnMenuSaveSubmenuForChart = new JMenu("Save"); chartPanel.getPopupMenu().add(btnMenuSaveSubmenuForChart); if (JDBCPointDao.points.isEmpty()) { btnSaveAsVCC.setEnabled(false); } saveChartAsPng(chartPanel); btnMenuSaveSubmenuForChart.add(btnSaveChartAsPngForChart); btnMenuSaveSubmenuForChart.add(btnSaveTableAsPngForChart); btnMenuSaveSubmenuForChart.add(btnSaveMapAsPngForChart); btnMenuSaveSubmenuForChart.addSeparator(); btnMenuSaveSubmenuForChart.add(btnSaveAsVCC); chartPanel.addChartMouseListener(new ChartMouseListener() { @Override public void chartMouseClicked(ChartMouseEvent event) { Rectangle2D dataArea = chartPanel.getScreenDataArea(); JFreeChart chart = event.getChart(); XYPlot plot = (XYPlot) chart.getPlot(); ValueAxis xAxis = plot.getDomainAxis(); double x = xAxis.java2DToValue(event.getTrigger().getX(), dataArea, RectangleEdge.BOTTOM); // make the crosshairs disappear if the mouse is out of range if (!xAxis.getRange().contains(x)) { x = Double.NaN; } x = Math.round(x); if (SwingUtilities.isLeftMouseButton(event.getTrigger()) && event.getTrigger().isShiftDown()) { for (PointDto cord : JDBCPointDao.points) { { if (cord.getPointID() == x) { if (pointTable.getSelectionModel() == null) { for (int i = 0; i < pointTable.getModel().getRowCount(); i++) { if (pointTable.getModel().getValueAt(i, 0).equals(cord.getPointID())) { pointTable.setRowSelectionInterval(i, i); } } } else { for (int i = 0; i < pointTable.getModel().getRowCount(); i++) { if (pointTable.getModel().getValueAt(i, 0).equals(cord.getPointID())) { pointTable.addRowSelectionInterval(pointTable.getSelectedRow(), i); } } } pointTable.scrollRectToVisible( pointTable.getCellRect(pointTable.getSelectedRow(), 0, true)); } } } } else { for (PointDto cord : JDBCPointDao.points) { { if (cord.getPointID() == x) { if (pointTable.getSelectionModel() != null) { pointTable.getSelectionModel().clearSelection(); } for (int i = 0; i < pointTable.getModel().getRowCount(); i++) { if (pointTable.getModel().getValueAt(i, 0).equals(cord.getPointID())) { pointTable.setRowSelectionInterval(i, i); } } pointTable.scrollRectToVisible( pointTable.getCellRect(pointTable.getSelectedRow(), 0, true)); //MainWindow.pointTable.revalidate(); } } } } } @Override public void chartMouseMoved(ChartMouseEvent event) { Rectangle2D dataArea = chartPanel.getScreenDataArea(); JFreeChart chart = event.getChart(); XYPlot plot = (XYPlot) chart.getPlot(); ValueAxis xAxis = plot.getDomainAxis(); double x = xAxis.java2DToValue(event.getTrigger().getX(), dataArea, RectangleEdge.BOTTOM); // make the crosshairs disappear if the mouse is out of range if (!xAxis.getRange().contains(x)) { x = Double.NaN; } double y = DatasetUtilities.findYValue(plot.getDataset(), 0, x); xCrosshair.setValue(x); yCrosshair.setValue(y); x = Math.round(x); for (PointDto cord : JDBCPointDao.points) { if (cord.getPointID() == x) { mapPanel.map().removeMapMarker(mapPanel.getMapPoint()); mapPanel.setMapPoint( new MapMarkerDot(null, null, cord.getPointLatidude(), cord.getPointLongtidude())); mapPanel.setMapPoint(mapPanel.getMapPoint()); mapPanel.getMapPoint().setColor(colorMapMarkerCircle); mapPanel.getMapPoint().setBackColor(colorMapMarkerHover); mapPanel.map().addMapMarker(mapPanel.getMapPoint()); } } } }); XYPlot xyPlot = (XYPlot) chart.getPlot(); ValueAxis rangeAxis = xyPlot.getRangeAxis(); NavigableMap<Double, PointDto> pointDtoSortedSpeedMap = new TreeMap<Double, PointDto>(); if (!JDBCPointDao.points.isEmpty()) { for (PointDto pointDto : JDBCPointDao.points) { pointDtoSortedSpeedMap.put(pointDto.getPointSpeed(), pointDto); } rangeAxis.setRange(pointDtoSortedSpeedMap.firstEntry().getKey() - 0.1, pointDtoSortedSpeedMap.lastEntry().getKey() + 0.1); } CrosshairOverlay crosshairOverlay = new CrosshairOverlay(); xCrosshair = new Crosshair(Double.NaN, Color.GRAY, new BasicStroke(0f)); xCrosshair.setLabelVisible(true); yCrosshair = new Crosshair(Double.NaN, Color.GRAY, new BasicStroke(0f)); yCrosshair.setLabelVisible(true); crosshairOverlay.addDomainCrosshair(xCrosshair); crosshairOverlay.addRangeCrosshair(yCrosshair); chartPanel.addOverlay(crosshairOverlay); graphPanel.removeAll(); graphPanel.add(chartPanel, BorderLayout.CENTER); graphPanel.revalidate(); graphPanel.repaint(); graphMapSplitPanel.revalidate(); }