List of usage examples for org.jfree.chart ChartFactory createLineChart
public static JFreeChart createLineChart(String title, String categoryAxisLabel, String valueAxisLabel, CategoryDataset dataset, PlotOrientation orientation, boolean legend, boolean tooltips, boolean urls)
From source file:org.jfree.chart.demo.LineChartDemo1.java
/** * Creates a sample chart.//from ww w . j a v a2 s .c o m * * @param dataset a dataset. * * @return The chart. */ private JFreeChart createChart(final CategoryDataset dataset) { // create the chart... final JFreeChart chart = ChartFactory.createLineChart("Line Chart Demo 1", // chart title "Type", // domain axis label "Value", // range axis label dataset, // data PlotOrientation.VERTICAL, // orientation true, // include legend true, // tooltips false // urls ); // NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART... // final StandardLegend legend = (StandardLegend) chart.getLegend(); // legend.setDisplaySeriesShapes(true); // legend.setShapeScaleX(1.5); // legend.setShapeScaleY(1.5); //legend.setDisplaySeriesLines(true); chart.setBackgroundPaint(Color.white); final CategoryPlot plot = (CategoryPlot) chart.getPlot(); plot.setBackgroundPaint(Color.lightGray); plot.setRangeGridlinePaint(Color.white); // customise the range axis... final NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); rangeAxis.setAutoRangeIncludesZero(true); // **************************************************************************** // * JFREECHART DEVELOPER GUIDE * // * The JFreeChart Developer Guide, written by David Gilbert, is available * // * to purchase from Object Refinery Limited: * // * * // * http://www.object-refinery.com/jfreechart/guide.html * // * * // * Sales are used to provide funding for the JFreeChart project - please * // * support us so that we can continue developing free software. * // **************************************************************************** // customise the renderer... final LineAndShapeRenderer renderer = (LineAndShapeRenderer) plot.getRenderer(); // renderer.setDrawShapes(true); renderer.setSeriesStroke(0, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 10.0f, 6.0f }, 0.0f)); renderer.setSeriesStroke(1, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 6.0f, 6.0f }, 0.0f)); renderer.setSeriesStroke(2, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 2.0f, 6.0f }, 0.0f)); // OPTIONAL CUSTOMISATION COMPLETED. return chart; }
From source file:mzmatch.ipeak.normalisation.VanDeSompele.java
public static void main(String args[]) { try {//from ww w . jav a 2s . c o m Tool.init(); // parse the commandline options Options options = new Options(); CmdLineParser cmdline = new CmdLineParser(options); // check whether we need to show the help cmdline.parse(args); if (options.help) { Tool.printHeader(System.out, application, version); cmdline.printUsage(System.out, ""); return; } if (options.verbose) { Tool.printHeader(System.out, application, version); cmdline.printOptions(); } // check the command-line parameters { // if the output directories do not exist, create them if (options.output != null) Tool.createFilePath(options.output, true); } // load the data if (options.verbose) System.out.println("Loading data"); ParseResult result = PeakMLParser.parse(new FileInputStream(options.input), true); Header header = result.header; IPeakSet<IPeakSet<? extends IPeak>> peaksets = (IPeakSet<IPeakSet<? extends IPeak>>) result.measurement; int nrmeasurements = header.getNrMeasurementInfos(); // remove the stability factor annotation for (IPeak peak : peaksets) peak.removeAnnotation("stability factor"); // load the database if (options.verbose) System.out.println("Loading the molecule database"); HashMap<String, Molecule> database = MoleculeIO.parseXml(new FileInputStream(options.database)); // filter the set to include only identifiable metabolites if (options.verbose) System.out.println("Creating selection"); Vector<IPeakSet<? extends IPeak>> selection = new Vector<IPeakSet<? extends IPeak>>(); for (Molecule molecule : database.values()) { double mass = molecule.getMass(Mass.MONOISOTOPIC); double delta = PeriodicTable.PPM(mass, options.ppm); // get the most intense peak containing all the measurements Vector<IPeakSet<? extends IPeak>> neighbourhoud = peaksets.getPeaksInMassRange(mass - delta, mass + delta); Collections.sort(neighbourhoud, IPeak.sort_intensity_descending); for (IPeakSet<? extends IPeak> neighbour : neighbourhoud) if (count(neighbour) == nrmeasurements) { selection.add(neighbour); break; } } // calculate the stability factor for each peak in the selection if (options.verbose) System.out.println("Calculating stability factors"); for (int peakid1 = 0; peakid1 < selection.size(); ++peakid1) { double stddeviations[] = new double[selection.size()]; IPeakSet<? extends IPeak> peakset1 = selection.get(peakid1); for (int peakid2 = 0; peakid2 < selection.size(); ++peakid2) { IPeakSet<? extends IPeak> peakset2 = selection.get(peakid2); double values[] = new double[nrmeasurements]; for (int measurementid = 0; measurementid < nrmeasurements; ++measurementid) { int measurementid1 = peakset1.get(measurementid).getMeasurementID(); int setid1 = header.indexOfSetInfo(header.getSetInfoForMeasurementID(measurementid1)); int measurementid2 = peakset2.get(measurementid).getMeasurementID(); int setid2 = header.indexOfSetInfo(header.getSetInfoForMeasurementID(measurementid2)); if (setid1 != setid2 || measurementid1 != measurementid2) System.err.println("[WARNING]: differing setid or spectrumid for comparison"); values[measurementid] = Math.log(peakset1.get(measurementid).getIntensity() / peakset2.get(measurementid).getIntensity()) / Math.log(2); } stddeviations[peakid2] = Statistical.stddev(values); } peakset1.addAnnotation("stability factor", Statistical.mean(stddeviations)); } // sort on the stability factor Collections.sort(selection, new IPeak.AnnotationAscending("stability factor")); // take the top 10% and calculate the geometric mean if (options.verbose) System.out.println("Calculating normalisation factors"); int nrselected = (int) (0.1 * selection.size()); if (nrselected < 10) nrselected = (10 < selection.size() ? 10 : selection.size()); double normalization_factors[] = new double[nrmeasurements]; for (int measurementid = 0; measurementid < nrmeasurements; ++measurementid) { double values[] = new double[nrselected]; for (int i = 0; i < nrselected; ++i) { IPeak peak = selection.get(i).get(measurementid); values[i] = peak.getIntensity(); } normalization_factors[measurementid] = Statistical.geomean(values); } // scale the found normalization factors double maxnf = Statistical.max(normalization_factors); for (int sampleid = 0; sampleid < nrmeasurements; ++sampleid) normalization_factors[sampleid] /= maxnf; // write the selection if needed if (options.selection != null) { if (options.verbose) System.out.println("Writing original selection data"); PeakMLWriter.write(result.header, selection, null, new GZIPOutputStream(new FileOutputStream(options.selection)), null); } // normalize all the peaks if (options.verbose) System.out.println("Normalizing all the entries"); for (IPeakSet<? extends IPeak> peakset : peaksets) { for (int measurementid = 0; measurementid < nrmeasurements; ++measurementid) { // TODO why did I do this again ? int id = 0; int setid = 0; int spectrumid = 0; for (int i = 0; i < header.getNrSetInfos(); ++i) { SetInfo set = header.getSetInfos().get(i); if (id + set.getNrMeasurementIDs() > measurementid) { setid = i; spectrumid = measurementid - id; break; } else id += set.getNrMeasurementIDs(); } MassChromatogram<Peak> masschromatogram = null; for (IPeak p : peakset) { int mymeasurementid = p.getMeasurementID(); int mysetid = header.indexOfSetInfo(header.getSetInfoForMeasurementID(mymeasurementid)); if (mysetid == setid && mymeasurementid == spectrumid) { masschromatogram = (MassChromatogram<Peak>) p; break; } } if (masschromatogram == null) continue; for (IPeak peak : masschromatogram.getPeaks()) peak.setIntensity(peak.getIntensity() / normalization_factors[measurementid]); } } // write the selection if needed if (options.selection_normalized != null) { if (options.verbose) System.out.println("Writing the normalized selection data"); PeakMLWriter.write(result.header, selection, null, new GZIPOutputStream(new FileOutputStream(options.selection_normalized)), null); } // write the factors if needed if (options.factors != null) { if (options.verbose) System.out.println("Writing the normalization factors"); PrintStream out = new PrintStream(options.factors); for (int measurementid = 0; measurementid < nrmeasurements; ++measurementid) out.println(header.getMeasurementInfo(measurementid).getLabel() + "\t" + normalization_factors[measurementid]); } // write the plot if needed if (options.img != null) { if (options.verbose) System.out.println("Writing the graph"); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); JFreeChart linechart = ChartFactory.createLineChart(null, "measurement", "normalization factor", dataset, PlotOrientation.VERTICAL, false, // legend false, // tooltips false // urls ); CategoryPlot plot = (CategoryPlot) linechart.getPlot(); CategoryAxis axis = (CategoryAxis) plot.getDomainAxis(); axis.setCategoryLabelPositions(CategoryLabelPositions.UP_45); LineAndShapeRenderer renderer = (LineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesShapesFilled(0, true); renderer.setSeriesShapesVisible(0, true); linechart.setBackgroundPaint(Color.WHITE); linechart.setBorderVisible(false); linechart.setAntiAlias(true); plot.setBackgroundPaint(Color.WHITE); plot.setDomainGridlinesVisible(true); plot.setRangeGridlinesVisible(true); // create the datasets for (int measurementid = 0; measurementid < nrmeasurements; ++measurementid) dataset.addValue(normalization_factors[measurementid], "", header.getMeasurementInfo(measurementid).getLabel()); JFreeChartTools.writeAsPDF(new FileOutputStream(options.img), linechart, 800, 500); } // write the normalized values if (options.verbose) System.out.println("Writing the normalized data"); PeakMLWriter.write(result.header, peaksets.getPeaks(), null, new GZIPOutputStream(new FileOutputStream(options.output)), null); } catch (Exception e) { Tool.unexpectedError(e, application); } }
From source file:org.bench4Q.console.ui.section.S_SPSSection.java
private JPanel printWIPSPic() throws IOException { double[][] value = sessionSmooth(); for (int i = 0; i < value[0].length; ++i) { value[0][i] = i;//from ww w .ja v a2s .co m // value[1][i] = webInteractionThroughput[i];. } DefaultCategoryDataset defaultcategorydataset = new DefaultCategoryDataset(); String series1 = "Basic"; String series2 = "real"; for (int i = 0; i < value[0].length; ++i) { defaultcategorydataset.addValue(value[1][i], series1, new Integer((int) value[0][i])); defaultcategorydataset.addValue(session[1][i], series2, new Integer((int) value[0][i])); } JFreeChart chart = ChartFactory.createLineChart("SPS = " + SPS, "time", "SPS", defaultcategorydataset, PlotOrientation.VERTICAL, true, true, false); chart.setBackgroundPaint(Color.white); CategoryPlot categoryplot = (CategoryPlot) chart.getPlot(); categoryplot.setBackgroundPaint(Color.WHITE); categoryplot.setRangeGridlinePaint(Color.white); NumberAxis numberaxis = (NumberAxis) categoryplot.getRangeAxis(); numberaxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); numberaxis.setAutoRangeIncludesZero(true); LineAndShapeRenderer lineandshaperenderer = (LineAndShapeRenderer) categoryplot.getRenderer(); lineandshaperenderer.setShapesVisible(false); lineandshaperenderer.setSeriesStroke(0, new BasicStroke(2.0F, 1, 1, 1.0F, new float[] { 1F, 1F }, 0.0F)); lineandshaperenderer.setSeriesStroke(1, new BasicStroke(2.0F, 1, 0, 2.0F, new float[] { 1F, 10000F }, 0.0F)); return new ChartPanel(chart); }
From source file:Controlador.ControladorLecturas.java
public JInternalFrame graficoHumedadAmbiental() { DefaultCategoryDataset defaultCategoryDataset = new DefaultCategoryDataset(); for (Object row : vectorHumedadAmbiental()) { int porcentaje = Integer.parseInt(((Vector) row).elementAt(0).toString()); String rowKey = "Sensor 1"; String columnKey = ((Vector) row).elementAt(1).toString(); defaultCategoryDataset.addValue(porcentaje, rowKey, columnKey); }//from w w w . j av a 2 s . co m JFreeChart jFreeChart = ChartFactory.createLineChart(null, "Hora", "Porcentaje Humedad", defaultCategoryDataset, PlotOrientation.VERTICAL, true, true, true); ChartPanel chartPanel = new ChartPanel(jFreeChart); JInternalFrame jInternalFrame = new JInternalFrame("Grafico de Humedad Ambiental", true, true, true, true); jInternalFrame.add(chartPanel, BorderLayout.CENTER); jInternalFrame.pack(); return jInternalFrame; }
From source file:org.cyberoam.iview.charts.CustomDomainAxis.java
public static JFreeChart getChart(int reportID, ResultSetWrapper rsw, HttpServletRequest request) { ReportBean reportBean = ReportBean.getRecordbyPrimarykey(reportID); JFreeChart chart = null;/*from w w w.ja va 2 s .com*/ // DefaultCategoryDataset dataset=null; CustomCategoryDataset datasetCustom = null; try { ReportColumnBean reportColumnBeanX = null; ReportColumnBean reportColumnBeanY = null; ReportColumnBean reportColumnBeanZ = null; GraphBean graphBean = null; graphBean = GraphBean.getRecordbyPrimarykey(reportBean.getGraphId()); reportColumnBeanX = ReportColumnBean.getRecordByPrimaryKey(reportBean.getReportId(), graphBean.getXColumnId());//getting ReportColumnBean For X Axis String xColumnDBname = reportColumnBeanX.getDbColumnName(); reportColumnBeanY = ReportColumnBean.getRecordByPrimaryKey(reportBean.getReportId(), graphBean.getYColumnId()); String yColumnDBname = reportColumnBeanY.getDbColumnName(); String zColumnDBname = null; datasetCustom = new CustomCategoryDataset(); rsw.beforeFirst(); String data = ""; int count = -1; Boolean showLegend = false; if (graphBean.getZColumnId() == -1) { while (rsw.next()) { data = rsw.getString(xColumnDBname); datasetCustom.addValue(rsw.getLong(yColumnDBname), "", data); } } else { String zData; showLegend = true; reportColumnBeanZ = ReportColumnBean.getRecordByPrimaryKey(reportBean.getReportId(), graphBean.getZColumnId()); zColumnDBname = reportColumnBeanZ.getDbColumnName(); while (rsw.next()) { data = rsw.getString(xColumnDBname); zData = rsw.getString(zColumnDBname); datasetCustom.addValue(rsw.getLong(yColumnDBname), zData, data); count++; } } chart = ChartFactory.createLineChart("", // chart title "", // domain axis label "", // range axis label datasetCustom, // data PlotOrientation.VERTICAL, // orientation showLegend, // include legend true, // tooltips false // urls ); LegendTitle legendTitle = chart.getLegend(); if (legendTitle != null) legendTitle.setItemFont(new Font("Vandara", Font.BOLD, 11)); chart.setBackgroundPaint(Color.white); CategoryPlot plot = chart.getCategoryPlot(); plot.setBackgroundPaint(Color.white); plot.setDomainGridlinePaint(Color.LIGHT_GRAY); plot.setDomainGridlinesVisible(true); plot.setRangeGridlinePaint(Color.LIGHT_GRAY); plot.setAxisOffset(new RectangleInsets(0, 0, 0, 0)); NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createStandardTickUnits()); rangeAxis.setTickLabelFont(new Font("Vandara", Font.CENTER_BASELINE, 10)); rangeAxis.setTickLabelInsets(new RectangleInsets(0, 0, 0, 5)); rangeAxis.setTickLabelsVisible(true); rangeAxis.setTickMarksVisible(false); rangeAxis.setAxisLineVisible(false); CustomDomainAxis catAxis = new CustomDomainAxis(); CustomDomainAxis.counter = 0; CustomDomainAxis.colCount = datasetCustom.getColumnCount(); catAxis.setTickLabelFont(new Font("Arial", Font.CENTER_BASELINE, 10)); catAxis.setTickMarksVisible(false); catAxis.setTickLabelInsets(new RectangleInsets(10, 15, 30, 10)); catAxis.setAxisLineVisible(false); catAxis.setCategoryLabelPositions( CategoryLabelPositions.createUpRotationLabelPositions(20 * Math.PI / 180)); plot.setDomainAxis(catAxis); final LineAndShapeRenderer renderer = (LineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesPaint(0, Color.DARK_GRAY); if (count > 0) { Color[] colors = null; colors = new Color[5]; colors[0] = new Color(24, 112, 176); colors[1] = new Color(168, 192, 232); colors[2] = new Color(248, 120, 8); colors[3] = new Color(248, 184, 120); colors[4] = new Color(152, 216, 136); for (int i = 0; i < count && i < colors.length; i++) renderer.setSeriesPaint(i, colors[i]); } } catch (Exception e) { CyberoamLogger.appLog.debug("LineChart: " + e.getMessage(), e); } return chart; }
From source file:org.usip.osp.graphs.GraphServer.java
public static JFreeChart getLineChart() { DefaultCategoryDataset cd = new DefaultCategoryDataset(); cd.addValue(20, "Population Satisfaction", new Integer(1)); //$NON-NLS-1$ cd.addValue(40, "Population Satisfaction", new Integer(2)); //$NON-NLS-1$ cd.addValue(60, "Population Satisfaction", new Integer(3)); //$NON-NLS-1$ cd.addValue(80, "Population Satisfaction", new Integer(4)); //$NON-NLS-1$ // create the chart... JFreeChart chart = ChartFactory.createLineChart("Population Satisfaction", // chart title //$NON-NLS-1$ "Game Round", // domain axis label //$NON-NLS-1$ "Satisfaction Level", // range axis label //$NON-NLS-1$ cd, // data PlotOrientation.VERTICAL, // orientation false, // include legend true, // tooltips false // urls );// ww w. j a v a 2 s. c o m return chart; }
From source file:edu.ucla.stat.SOCR.chart.demo.StatisticalLineChartDemo1.java
protected JFreeChart createLegend(CategoryDataset dataset) { // JFreeChart chart = ChartFactory.createAreaChart( JFreeChart chart = ChartFactory.createLineChart(chartTitle, // chart title domainLabel, // domain axis label rangeLabel, // range axis label dataset, // data PlotOrientation.VERTICAL, // orientation true, // include legend true, // tooltips false // urls );/*from w w w . j a va2 s . c om*/ // NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART... chart.setBackgroundPaint(Color.white); CategoryPlot plot = chart.getCategoryPlot(); StatisticalLineAndShapeRenderer renderer = new StatisticalLineAndShapeRenderer(true, false); plot.setRenderer(renderer); return chart; }
From source file:org.yooreeka.util.gui.ScatterGui.java
public JFreeChart createLineChart(String[] items, LineChartData data1, LineChartData data2) { DefaultCategoryDataset dataset = new DefaultCategoryDataset(); for (int i = 0, n = items.length; i < n; i++) { dataset.addValue(data1.getData()[i], data1.getLabel(), items[i]); dataset.addValue(data2.getData()[i], data2.getLabel(), items[i]); }/*from w w w . j ava 2s. c o m*/ //TODO: Externalize the hardcoded values final JFreeChart chart = ChartFactory.createLineChart(getTitle(), getXLabel(), getYLabel(), dataset, PlotOrientation.VERTICAL, true, // does it have a legend? true, // does it have tooltips? false); // does it have URLs? return chart; }
From source file:edu.ucla.stat.SOCR.chart.demo.LineChartDemo5.java
/** * Creates a sample chart.// w w w .j a va 2 s . c o m * * @param dataset the dataset. * * @return a chart. */ protected JFreeChart createChart(CategoryDataset dataset) { JFreeChart chart = ChartFactory.createLineChart(chartTitle, // chart title domainLabel, // domain axis label rangeLabel, // range axis label dataset, // data PlotOrientation.VERTICAL, // orientation !legendPanelOn, // include legend true, // tooltips false // urls ); chart.setBackgroundPaint(Color.white); Shape[] shapes = new Shape[3]; int[] xpoints; int[] ypoints; // right-pointing triangle xpoints = new int[] { -3, 3, -3 }; ypoints = new int[] { -3, 0, 3 }; shapes[0] = new Polygon(xpoints, ypoints, 3); // vertical rectangle shapes[1] = new Rectangle2D.Double(-2, -3, 3, 6); // left-pointing triangle xpoints = new int[] { -3, 3, 3 }; ypoints = new int[] { 0, -3, 3 }; shapes[2] = new Polygon(xpoints, ypoints, 3); DrawingSupplier supplier = new DefaultDrawingSupplier(DefaultDrawingSupplier.DEFAULT_PAINT_SEQUENCE, DefaultDrawingSupplier.DEFAULT_OUTLINE_PAINT_SEQUENCE, DefaultDrawingSupplier.DEFAULT_STROKE_SEQUENCE, DefaultDrawingSupplier.DEFAULT_OUTLINE_STROKE_SEQUENCE, shapes); CategoryPlot plot = chart.getCategoryPlot(); plot.setOrientation(PlotOrientation.HORIZONTAL); plot.setBackgroundPaint(Color.lightGray); plot.setDomainGridlinePaint(Color.white); plot.setRangeGridlinePaint(Color.white); plot.setDrawingSupplier(supplier); // set the stroke for each series... plot.getRenderer().setSeriesStroke(0, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 10.0f, 6.0f }, 0.0f)); plot.getRenderer().setSeriesStroke(1, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 6.0f, 6.0f }, 0.0f)); plot.getRenderer().setSeriesStroke(2, new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, new float[] { 2.0f, 6.0f }, 0.0f)); // customise the renderer... LineAndShapeRenderer renderer = (LineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); renderer.setBaseItemLabelsVisible(true); renderer.setBaseItemLabelGenerator(new StandardCategoryItemLabelGenerator()); renderer.setLegendItemLabelGenerator(new SOCRCategorySeriesLabelGenerator()); // customise the range axis... NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); rangeAxis.setAutoRangeIncludesZero(false); rangeAxis.setUpperMargin(0.12); setCategorySummary(dataset); return chart; }
From source file:org.yooreeka.util.gui.XyLogGui.java
/** * @param title// w w w . j a v a 2 s. c om * chart title * @param nameForData1 * identifier for a data group/series * @param nameForData2 * identifier for a data group/series * @param items * values/categories that correspond to data values */ public XyLogGui(String title, String nameForData1, String nameForData2, String[] items, double[] data1, double[] data2) { super(title); DefaultCategoryDataset dataset = new DefaultCategoryDataset(); for (int i = 0, n = items.length; i < n; i++) { dataset.addValue(data1[i], nameForData1, items[i]); dataset.addValue(data2[i], nameForData2, items[i]); } final JFreeChart chart = ChartFactory.createLineChart("User Similarity", "Items", "Rating", dataset, PlotOrientation.VERTICAL, true, true, false); final ChartPanel chartPanel = new ChartPanel(chart); chartPanel.setPreferredSize(new java.awt.Dimension(500, 270)); setContentPane(chartPanel); }