List of usage examples for org.jfree.chart.plot PiePlot setBackgroundPaint
public void setBackgroundPaint(Paint paint)
From source file:edu.monash.merc.struts2.action.TLSumChartAction.java
@SuppressWarnings("unchecked") public String piechart() { DefaultPieDataset dataset = new DefaultPieDataset(); dataset.setValue("Green", l4); dataset.setValue("Yellow", l3); dataset.setValue("Red", l2); dataset.setValue("Black", l1); chart = ChartFactory.createPieChart(dt, dataset, true, true, false); PiePlot plot = (PiePlot) chart.getPlot(); plot.setBackgroundPaint(Color.WHITE); //no border/*from w w w.ja v a 2s .c o m*/ plot.setOutlineStroke(null); //no label plot.setLabelGenerator(null); NumberFormat percentFormat = NumberFormat.getPercentInstance(); percentFormat.setMaximumFractionDigits(2); plot.setLegendLabelGenerator( new StandardPieSectionLabelGenerator("{0}={2}", NumberFormat.getNumberInstance(), percentFormat)); //set specific colors green, yellow, red and black Color[] colors = { new Color(0, 140, 0), new Color(254, 172, 0), new Color(226, 0, 40), new Color(0, 0, 0) }; setColor(plot, dataset, colors); chart.setBackgroundPaint(Color.WHITE); chart.getTitle().setFont(chart.getTitle().getFont().deriveFont(11.0f)); return SUCCESS; }
From source file:cn.edu.thss.iise.bpmdemo.charts.PieChartDemo4.java
/** * Default constructor./*from w ww . j a v a 2 s .c o m*/ * * @param title * the frame title. */ public PieChartDemo4(final String title) { super(title); final PieDataset dataset = createDataset(14); // create the chart... final JFreeChart chart = ChartFactory.createPieChart("Pie Chart Demo 4", // chart title dataset, // dataset false, // include legend true, false); // set the background color for the chart... chart.setBackgroundPaint(new Color(222, 222, 255)); final PiePlot plot = (PiePlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setCircular(true); plot.setLabelGenerator(new StandardPieItemLabelGenerator("{0} = {2}", NumberFormat.getNumberInstance(), NumberFormat.getPercentInstance())); plot.setNoDataMessage("No data available"); // add the chart to a panel... final ChartPanel chartPanel = new ChartPanel(chart); chartPanel.setPreferredSize(new java.awt.Dimension(500, 270)); // add table Object[][] data = { { "Kathy0", new Integer(0) }, { "Kathy1", new Integer(2) }, { "Kathy2", new Integer(5) }, { "Kathy3", new Integer(5) }, { "Kathy4", new Integer(5) }, { "Kathy5", new Integer(5) }, { "Kathy6", new Integer(5) }, { "Kathy7", new Integer(5) }, { "Kathy8", new Integer(5) }, { "Kathy9", new Integer(5) } }; String[] columnNames = { "Model Name", "Reuse Number" }; JTable table = new JTable(data, columnNames); final JPanel panel = new JPanel(); panel.add(chartPanel); panel.add(table); setContentPane(panel); final Rotator rotator = new Rotator(plot); rotator.start(); }
From source file:gavisualizer.PieChart.java
@Override public void generate() { // Creates Pie Chart from variables JFreeChart chart = ChartFactory.createPieChart(_title, // chart title _dataset, // data false, // include legend false, false);//from w ww . j a v a2 s.c o m // Set Plot canvas color and direction PiePlot plot = (PiePlot) chart.getPlot(); plot.setDirection(Rotation.CLOCKWISE); plot.setForegroundAlpha(0.5f); plot.setBackgroundPaint(Color.WHITE); /* * Use these to edit the decimal percentage: * NumberFormat nf = NumberFormat.getPercentInstance(); * nf.setRoundingMode(RoundingMode.); * nf.setMinimumFractionDigits(2); * plot.setLabelGenerator(new StandardPieSectionLabelGenerator("{0} {2}", NumberFormat.getNumberInstance(), nf)); * * And remove line 63 */ plot.setLabelGenerator(new StandardPieSectionLabelGenerator("{0} {2}")); plot.setOutlinePaint(Color.white); _chart = chart; }
From source file:uom.research.thalassemia.util.PieChartCreator.java
/** * Creates a chart.//from www . ja va 2s. com * * @param dataset the dataset. * * @return A chart. */ private JFreeChart createChart(PieDataset dataset) { JFreeChart chart = ChartFactory.createPieChart(title, // chart title dataset, // data true, // no legend true, // tooltips false // no URL generation ); // set a custom background for the chart chart.setBackgroundPaint( new GradientPaint(new Point(0, 0), new Color(20, 20, 20), new Point(400, 200), Color.DARK_GRAY)); // customise the title position and font TextTitle t = chart.getTitle(); t.setHorizontalAlignment(HorizontalAlignment.LEFT); t.setPaint(new Color(240, 240, 240)); t.setFont(new Font("Arial", Font.BOLD, 26)); PiePlot plot = (PiePlot) chart.getPlot(); plot.setBackgroundPaint(null); plot.setInteriorGap(0.04); plot.setOutlineVisible(false); // use gradients and white borders for the section colours int itemIndex = 0; for (Object col : pieDataset.getKeys()) { plot.setSectionPaint(col.toString(), gradientPaints[itemIndex]); if (itemIndex == pieDataset.getItemCount() - 1) { itemIndex = 0; } itemIndex++; } plot.setBaseSectionOutlinePaint(Color.WHITE); plot.setSectionOutlinesVisible(true); plot.setBaseSectionOutlineStroke(new BasicStroke(2.0f)); // customise the section label appearance plot.setLabelFont(new Font("Courier New", Font.BOLD, 20)); plot.setLabelLinkPaint(Color.WHITE); plot.setLabelLinkStroke(new BasicStroke(2.0f)); plot.setLabelOutlineStroke(null); plot.setLabelPaint(Color.WHITE); plot.setLabelBackgroundPaint(null); // add a subtitle giving the data source TextTitle source = new TextTitle("Source: http://www.bbc.co.uk/news/business-15489523", new Font("Courier New", Font.PLAIN, 12)); source.setPaint(Color.WHITE); source.setPosition(RectangleEdge.BOTTOM); source.setHorizontalAlignment(HorizontalAlignment.RIGHT); chart.addSubtitle(source); return chart; }
From source file:cn.edu.thss.iise.bpmdemo.statistics.actions.ModelReusePanel.java
private JPanel createPanel() throws IOException { createDataSet();// www . j av a 2s . c o m // create the chart... final JFreeChart chart = ChartFactory.createPieChart("Reused Times", // chart // title data1, // dataset false, // include legend true, false); // set the background color for the chart... chart.setBackgroundPaint(new Color(222, 222, 255)); final PiePlot plot = (PiePlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setCircular(true); plot.setLabelGenerator(new StandardPieItemLabelGenerator("{0} = {2}", NumberFormat.getNumberInstance(), NumberFormat.getPercentInstance())); plot.setNoDataMessage("No data available"); // add the chart to a panel... final ChartPanel chartPanel = new ChartPanel(chart); chartPanel.setPreferredSize(new java.awt.Dimension(500, 270)); String[] columnNames = { "Name", "Reuse Times" }; JTable table = new JTable(data2, columnNames); JPanel panel = new JPanel(); panel.add(chartPanel); panel.add(table); final Rotator rotator = new Rotator(plot); rotator.start(); return panel; }
From source file:Software_Jframes.chart.java
public void piechart(JDesktopPane jDesktopPane1, String pid) { DefaultPieDataset piedataset = new DefaultPieDataset(); try {//from w ww.j a v a 2 s.co m ResultSet rs = db.statement() .executeQuery("select name,cost from project_level_payment where projectid='" + pid + "' "); while (rs.next()) { String cost = rs.getString("cost"); int cost_int1 = Integer.parseInt(cost); String name = rs.getString("name"); piedataset.setValue(name, new Integer(cost_int1)); } } catch (Exception e) { e.printStackTrace(); } JFreeChart chart = ChartFactory.createPieChart("Costs for Project", piedataset, true, true, true); PiePlot p = (PiePlot) chart.getPlot(); p.setBackgroundPaint(Color.white); ChartPanel panel = new ChartPanel(chart); jDesktopPane1.add(panel).setSize(440, 300); }
From source file:Software_Jframes.chart.java
public void piechart_customer(JDesktopPane jDesktopPane1, String pid) { DefaultPieDataset piedataset = new DefaultPieDataset(); int cost_total = 0; try {/* www . j a va 2 s. c o m*/ ResultSet rs = db.statement().executeQuery("select * from cus_payment where Project_id='" + pid + "' "); while (rs.next()) { String cost = rs.getString("Amount"); int cost_int1 = Integer.parseInt(cost); cost_total = cost_total + cost_int1; } } catch (Exception e) { e.printStackTrace(); } piedataset.setValue("Amount Received", cost_total); piedataset.setValue("Amount to be Received", 7854); JFreeChart chart = ChartFactory.createPieChart("Costs for Project", piedataset, true, true, true); PiePlot p = (PiePlot) chart.getPlot(); p.setBackgroundPaint(Color.white); ChartPanel panel = new ChartPanel(chart); jDesktopPane1.add(panel).setSize(500, 230); }
From source file:com.itemanalysis.jmetrik.graph.piechart.PieChartPanel.java
public void setGraph() { if (hasGroupVariable) { DefaultCategoryDataset piedat = new DefaultCategoryDataset(); chart = ChartFactory.createMultiplePieChart(chartTitle, piedat, TableOrder.BY_ROW, showLegend, true, false);/*from w w w . j a va 2 s .c om*/ if (chartSubtitle != null && !"".equals(chartSubtitle)) { TextTitle subtitle1 = new TextTitle(chartSubtitle); chart.addSubtitle(subtitle1); } MultiplePiePlot plot = (MultiplePiePlot) chart.getPlot(); JFreeChart subchart = plot.getPieChart(); PiePlot p = (PiePlot) subchart.getPlot(); p.setBackgroundPaint(Color.WHITE); p.setLabelGenerator(new StandardPieSectionLabelGenerator("{0} ({2})")); if (explode) p.setExplodePercent(explodeValue, explodePercent); ChartPanel panel = new ChartPanel(chart); panel.setPreferredSize(new Dimension(width, height)); chart.setPadding(new RectangleInsets(20.0, 5.0, 20.0, 5.0)); this.add(panel); } else { DefaultPieDataset piedat = new DefaultPieDataset(); if (command.getSelectOneOption("view").isValueSelected("3D")) { chart = ChartFactory.createPieChart3D(chartTitle, piedat, showLegend, true, false); PiePlot3D plot = (PiePlot3D) chart.getPlot(); plot.setStartAngle(290); plot.setDirection(Rotation.CLOCKWISE); plot.setForegroundAlpha(0.5f); plot.setNoDataMessage("No data to display"); if (explode) plot.setExplodePercent(explodeValue, explodePercent); } else { chart = ChartFactory.createPieChart(command.getFreeOption("title").getString(), piedat, showLegend, true, false); } if (chartSubtitle != null && !"".equals(chartSubtitle)) { TextTitle subtitle = new TextTitle(chartSubtitle); chart.addSubtitle(subtitle); } PiePlot plot = (PiePlot) chart.getPlot(); plot.setLabelGap(0.02); plot.setLabelGenerator(new StandardPieSectionLabelGenerator("{0} ({2})")); plot.setBackgroundPaint(Color.WHITE); if (explode) plot.setExplodePercent(explodeValue, explodePercent); ChartPanel panel = new ChartPanel(chart); panel.getPopupMenu().addSeparator(); this.addJpgMenuItem(this, panel.getPopupMenu()); panel.setPreferredSize(new Dimension(width, height)); chart.setPadding(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); this.setBackground(Color.WHITE); this.add(panel); } }
From source file:net.footballpredictions.footballstats.swing.ResultsPieChart.java
/** * Updates the relative sizes of the pie chart segments. *///from w ww . ja va 2s. c om public void updateGraph(int won, int drawn, int lost) { DefaultKeyedValues values = new DefaultKeyedValues(); values.addValue(messageResources.getString("headToHead.won"), won); values.addValue(messageResources.getString("headToHead.drawn"), drawn); values.addValue(messageResources.getString("headToHead.lost"), lost); PieDataset dataSet = new DefaultPieDataset(values); JFreeChart chart = ChartFactory.createPieChart(title, dataSet, false, // Legend. true, // Tooltips. false); // URLs. PiePlot plot = (PiePlot) chart.getPlot(); plot.setInteriorGap(0); plot.setSectionPaint(0, Colours.WIN); plot.setSectionPaint(1, Colours.DRAW); plot.setSectionPaint(2, Colours.DEFEAT); plot.setBackgroundPaint(null); plot.setOutlinePaint(null); plot.setLabelGenerator(null); plot.setToolTipGenerator(new StandardPieToolTipGenerator("{0} {1} ({2})")); setChart(chart); }
From source file:uk.ac.bbsrc.tgac.miso.core.util.ReportsUtils.java
public static String buildHTMLReport(List<? extends Reportable> reportables, String type, List<String> options) throws ReportingException { Random generator = new Random(); StringBuilder sb = new StringBuilder(); Boolean chartbool = false;/*from www . jav a 2 s. c o m*/ if (options.contains("Chart")) { chartbool = true; } // header sb.append( "<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.1//EN\" \"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd\">\n" + "<?xml version=\"1.0\" encoding=\"UTF-8\" ?>\n" + "<html xmlns=\"http://www.w3.org/1999/xhtml\" xml:lang=\"en-gb\">\n" + "<head>\n" + " <meta http-equiv=\"Content-Type\" content=\"text/html; charset=ISO-8859-1\">\n" + "<meta http-equiv=\"Pragma\" content=\"no-cache\">\n" + "<meta http-equiv=\"Cache-Control\" content=\"no-cache\">\n" + "<meta http-equiv=\"Expires\" content=\"Sat, 01 Dec 2001 00:00:00 GMT\">\n" + " <link rel=\"stylesheet\" href=\"/styles/style.css\" type=\"text/css\">\n" + "<title>MISO Report</title>" + "</head><body onLoad=\"self.focus()\"><table border=\"0\" width=\"100%\">\n" + " <tr>\n" + " <td class=\"headertable\" align=\"left\" \">\n" + " <img src=\"/styles/images/miso_logo.png\" alt=\"MISO Logo\" name=\"logo\"\n" + " border=\"0\" id=\"misologo\"/>\n" + " </td>\n" + " <td class=\"headertable\" align=\"right\" \">\n" + " <img src=\"/styles/images/tgac_new_logo.png\" alt=\"TGAC Logo\" name=\"logo\"\n" + " border=\"0\" id=\"tgaclogo\"/>\n" + " </td>\n" + " </tr>\n" + "</table><hr/>"); // end of header if (type.equals("Project")) { Boolean incOverview = false; Boolean incSamples = false; if (options.contains("Overview")) { incOverview = true; } if (options.contains("Samples")) { incSamples = true; } if (reportables.size() == 1) { //Single Project report List reportableslist = new ArrayList<Reportable>(reportables); Reportable reportable = (Reportable) reportableslist.get(0); Project project = (Project) reportable; sb.append("<h1>Project Information</h1><br/><div class='report'>"); sb.append("<b>Project Name: </b> " + project.getName()); sb.append("<br/><br/>"); sb.append("<b>Project Alias: </b> " + project.getAlias()); sb.append("<br/><br/>"); sb.append("<b>Project Description: </b> " + project.getDescription()); sb.append("<br/><br/>"); sb.append("<b>Progress: </b> " + project.getProgress().name()); sb.append("<br/><br/>"); if (project.getOverviews().size() > 0 && incOverview) { sb.append("<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>Principal Investigator</th>\n" + " <th>Start Date</th>\n" + " <th>End Date</th>\n" + " <th>Proposed Samples</th>\n" + " <th>QC Passed Sample</th>\n" + " </tr>\n" + " </thead>\n" + " <tbody>"); for (ProjectOverview overview : project.getOverviews()) { sb.append("<tr>\n" + " <td>" + overview.getPrincipalInvestigator() + "</td>\n" + " <td>" + overview.getStartDate() + "</td>\n" + " <td>" + overview.getEndDate() + "</td>\n" + " <td>" + overview.getNumProposedSamples().toString() + "</td>\n" + " <td>" + overview.getQcPassedSamples().size() + "</td>\n" + " </tr>"); } sb.append("</tbody>\n" + " </table>"); } else { if (incOverview) { sb.append("<b>Overview:</b> None."); } } sb.append("<br/>"); if (project.getSamples().size() > 0 && incSamples) { sb.append("<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>Sample Name</th>\n" + " <th>Sample Alias</th>\n" + " <th>Type</th>\n" + " <th>QC Passed</th>\n" + " </tr>\n" + " </thead>\n" + " <tbody>"); for (Sample sample : project.getSamples()) { sb.append("<tr>\n" + " <td><b>" + sample.getName() + "</b></td>\n" + " <td>" + sample.getAlias() + "</td>\n" + " <td>" + sample.getSampleType() + "</td>\n" + " <td>" + sample.getQcPassed().toString() + "</td>\n" + " </tr>"); } sb.append("</tbody>\n" + " </table>"); } else { if (incSamples) { sb.append("<b>Samples:</b> None."); } } } // Lists of Projects report else if (reportables.size() > 1) { sb.append("<h1>Projects Information</h1><br/><div class='report'>"); Map<String, Integer> map = new HashMap<String, Integer>(); sb.append("<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>Project Name</th>\n" + " <th>Project Alias</th>\n" + " <th>Project Description</th>\n" + " <th>Progress</th>\n"); if (incOverview) { sb.append(" <th>Overviews</th>\n"); } if (incSamples) { sb.append(" <th>Samples</th>\n"); } sb.append(" </tr>\n" + " </thead>\n" + " <tbody>"); for (Reportable reportable : reportables) { Project project = (Project) reportable; sb.append("<tr><td>" + project.getName()); sb.append("</td>"); sb.append("<td> " + project.getAlias()); sb.append("</td>"); sb.append("<td> " + project.getDescription()); sb.append("</td>"); sb.append("<td> " + project.getProgress().name()); sb.append("</td>"); if (incOverview) { sb.append("<td>"); if (project.getOverviews().size() > 0) { sb.append("<ul class='bullets'>"); for (ProjectOverview overview : project.getOverviews()) { sb.append("<li>Principal Investigator: " + overview.getPrincipalInvestigator() + "<br/> Start Date: " + overview.getStartDate() + "<br/> End Date: " + overview.getEndDate() + "<br/> Proposed Samples: " + overview.getNumProposedSamples().toString() + "<br/> QC Passed Samples: " + overview.getQcPassedSamples().size() + "</li>"); } sb.append("</ul>"); } else { sb.append("None"); } sb.append("</td>"); } if (incSamples) { sb.append("<td>"); if (project.getSamples().size() > 0) { sb.append("<ul class='bullets'>"); for (Sample sample : project.getSamples()) { sb.append("<li>" + sample.getAlias() + "</li>"); } sb.append("</ul>"); } else { sb.append("None"); } sb.append("</td>"); } sb.append("</tr>"); int count = map.containsKey(project.getProgress().getKey()) ? map.get(project.getProgress().getKey()) : 0; count++; map.put(project.getProgress().getKey(), count); } sb.append(" </tbody>\n" + "</table>"); Integer unknown = map.containsKey("Unknown") ? map.get("Unknown") : 0; Integer active = map.containsKey("Active") ? map.get("Active") : 0; Integer inactive = map.containsKey("Inactive") ? map.get("Inactive") : 0; Integer cancelled = map.containsKey("Cancelled") ? map.get("Cancelled") : 0; Integer proposed = map.containsKey("Proposed") ? map.get("Proposed") : 0; Integer pending = map.containsKey("Pending") ? map.get("Pending") : 0; Integer approved = map.containsKey("Approved") ? map.get("Approved") : 0; Integer completed = map.containsKey("Completed") ? map.get("Completed") : 0; //jfreechart final DefaultPieDataset data = new DefaultPieDataset(); data.setValue("Unknown " + unknown, unknown); data.setValue("Active " + active, active); data.setValue("Inactive " + inactive, inactive); data.setValue("Cancelled " + cancelled, cancelled); data.setValue("Proposed " + proposed, proposed); data.setValue("Pending " + pending, pending); data.setValue("Approved " + approved, approved); data.setValue("Completed " + completed, completed); final JFreeChart chart = ChartFactory.createPieChart("Projects Status Information", // chart title data, // data false, // include legend true, false); final PiePlot plot = (PiePlot) chart.getPlot(); plot.setStartAngle(290); plot.setDirection(Rotation.CLOCKWISE); plot.setBackgroundPaint(Color.white); plot.setForegroundAlpha(0.5f); plot.setNoDataMessage("No data to display"); int r = generator.nextInt(); File projectchart = new File("../webapps/ROOT/styles/images/projectschart" + r + ".png"); try { ChartUtilities.saveChartAsPNG(projectchart, chart, 500, 300); } catch (IOException e) { e.printStackTrace(); } if (chartbool) { sb.append("<br/><img src='/styles/images/projectschart" + r + ".png'/>"); } } else { sb.append("<h1>Project Information</h1><br/><div class='report'>Nothing to Report."); } } else if (type.equals("Sample")) { Boolean incQC = false; if (options.contains("QC")) { incQC = true; } if (reportables.size() == 1) { //Single Sample report List reportableslist = new ArrayList<Reportable>(reportables); Reportable reportable = (Reportable) reportableslist.get(0); Sample sample = (Sample) reportable; sb.append("<h1>Sample Information</h1><br/><div class='report'>"); sb.append("<b>Sample Name: </b> " + sample.getName()); sb.append("<br/><br/>"); sb.append("<b>Project Alias: </b> " + sample.getProject().getAlias()); sb.append("<br/><br/>"); sb.append("<b>Sample Alias: </b> " + sample.getAlias()); sb.append("<br/><br/>"); sb.append("<b>Sample Description: </b> " + sample.getDescription()); sb.append("<br/><br/>"); sb.append("<b>Scientific Name: </b> " + sample.getScientificName()); sb.append("<br/><br/>"); sb.append("<b>Sample Type: </b> " + sample.getSampleType()); sb.append("<br/><br/>"); sb.append("<b>QC Passed: </b> " + sample.getQcPassed().toString()); sb.append("<br/><br/>"); if (sample.getSampleQCs().size() > 0 && incQC) { sb.append("<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>QCed By</th>\n" + " <th>QC Date</th>\n" + " <th>Method</th>\n" + " <th>Results</th>\n" + " </tr>\n" + " </thead>\n" + " <tbody>"); for (SampleQC sampleQC : sample.getSampleQCs()) { sb.append("<tr>\n" + " <td>" + sampleQC.getQcCreator() + "</td>\n" + " <td>" + sampleQC.getQcDate().toString() + "</td>\n" + " <td>" + sampleQC.getQcType().getName() + "</td>\n" + " <td>" + sampleQC.getResults().toString() + "ng/µl</td>\n" + " </tr>"); } sb.append("</tbody>\n" + " </table>"); } else { if (incQC) { sb.append("<b>QC:</b> None."); } } } // Lists of Samples report else if (reportables.size() > 1) { sb.append("<h1>Samples Information</h1><br/><div class='report'>"); Map<String, Integer> typeMap = new HashMap<String, Integer>(); Map<String, Integer> qcMap = new HashMap<String, Integer>(); sb.append("<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>Sample Name</th>\n" + " <th>Project Alias</th>\n" + " <th>Sample Alias</th>\n" + " <th>Sample Description</th>\n" + " <th>Scientific Name</th>\n" + " <th>Sample Type</th>\n" + " <th>QC Passed</th>\n"); if (incQC) { sb.append(" <th>QC</th>\n"); } sb.append(" </tr>\n" + " </thead>\n" + " <tbody>"); for (Reportable reportable : reportables) { Sample sample = (Sample) reportable; sb.append("<tr><td>" + sample.getName()); sb.append("</td>"); sb.append("<td>" + sample.getProject().getAlias()); sb.append("</td>"); sb.append("<td> " + sample.getAlias()); sb.append("</td>"); sb.append("<td> " + sample.getDescription()); sb.append("</td>"); sb.append("<td> " + sample.getScientificName()); sb.append("</td>"); sb.append("<td> " + sample.getSampleType()); sb.append("</td>"); sb.append("<td> " + sample.getQcPassed().toString()); sb.append("</td>"); if (incQC) { sb.append("<td>"); if (sample.getSampleQCs().size() > 0) { sb.append("<ul class='bullets'>"); for (SampleQC sampleQC : sample.getSampleQCs()) { sb.append("<li>\n" + " QCed By: " + sampleQC.getQcCreator() + "<br/>\n" + " QC Date: " + sampleQC.getQcDate().toString() + "<br/>\n" + " Method: " + sampleQC.getQcType().getName() + "<br/>\n" + " Results: " + sampleQC.getResults().toString() + "ng/µl</li>"); } sb.append("</ul>"); } else { sb.append("None"); } sb.append("</td>"); } sb.append("</tr>"); int typecount = typeMap.containsKey(sample.getSampleType()) ? typeMap.get(sample.getSampleType()) : 0; typecount++; typeMap.put(sample.getSampleType(), typecount); int qccount = qcMap.containsKey(sample.getQcPassed().toString()) ? qcMap.get(sample.getQcPassed().toString()) : 0; qccount++; qcMap.put(sample.getQcPassed().toString(), qccount); } sb.append(" </tbody>\n" + "</table>"); Integer nonGENOMIC = typeMap.containsKey("NON GENOMIC") ? typeMap.get("NON GENOMIC") : 0; Integer genomic = typeMap.containsKey("GENOMIC") ? typeMap.get("GENOMIC") : 0; Integer other = typeMap.containsKey("OTHER") ? typeMap.get("OTHER") : 0; Integer viralRNA = typeMap.containsKey("VIRAL RNA") ? typeMap.get("VIRAL RNA") : 0; Integer synthetic = typeMap.containsKey("SYNTHETIC") ? typeMap.get("SYNTHETIC") : 0; //jfreechart for type final DefaultPieDataset data = new DefaultPieDataset(); data.setValue("NON GENOMIC " + nonGENOMIC, nonGENOMIC); data.setValue("GENOMIC " + genomic, genomic); data.setValue("OTHER " + other, other); data.setValue("VIRAL RNA " + viralRNA, viralRNA); data.setValue("SYNTHETIC " + synthetic, synthetic); final JFreeChart chart = ChartFactory.createPieChart("Samples Type Information", // chart title data, // data false, // include legend true, false); final PiePlot plot = (PiePlot) chart.getPlot(); plot.setStartAngle(290); plot.setDirection(Rotation.CLOCKWISE); plot.setForegroundAlpha(0.5f); plot.setBackgroundPaint(Color.white); plot.setNoDataMessage("No data to display"); int r = generator.nextInt(); File samplechart = new File("../webapps/ROOT/styles/images/samplestypechart" + r + ".png"); try { ChartUtilities.saveChartAsPNG(samplechart, chart, 500, 300); } catch (IOException e) { e.printStackTrace(); } if (chartbool) { sb.append("<br/><img src='/styles/images/samplestypechart" + r + ".png'/>"); } Integer qcpassed = qcMap.containsKey("true") ? qcMap.get("true") : 0; Integer qcnotpassed = qcMap.containsKey("false") ? qcMap.get("false") : 0; //jfreechart for qc final DefaultPieDataset qcdata = new DefaultPieDataset(); qcdata.setValue("QC Passed " + qcpassed, qcpassed); qcdata.setValue("QC Not Passed " + qcnotpassed, qcnotpassed); final JFreeChart qcchart = ChartFactory.createPieChart("Samples QC Information", // chart title qcdata, // data false, // include legend true, false); final PiePlot qcplot = (PiePlot) qcchart.getPlot(); qcplot.setStartAngle(290); qcplot.setDirection(Rotation.CLOCKWISE); qcplot.setForegroundAlpha(0.5f); qcplot.setBackgroundPaint(Color.white); qcplot.setNoDataMessage("No data to display"); File sampleqcchart = new File("../webapps/ROOT/styles/images/samplesqcchart" + r + ".png"); try { ChartUtilities.saveChartAsPNG(sampleqcchart, qcchart, 500, 300); } catch (IOException e) { e.printStackTrace(); } if (chartbool) { sb.append(" <img src='/styles/images/samplesqcchart" + r + ".png'/>"); } } else { sb.append("<h1>Sample Information</h1><br/><div class='report'>Nothing to Report."); } } else if (type.equals("Run")) { Boolean incAlias = false; Boolean incDescription = false; if (options.contains("Alias")) { incAlias = true; } if (options.contains("Description")) { incDescription = true; } if (reportables.size() == 1) { //Single Run report List reportableslist = new ArrayList<Reportable>(reportables); Reportable reportable = (Reportable) reportableslist.get(0); Run run = (Run) reportable; sb.append("<h1>Run Information</h1><br/><div class='report'>"); sb.append("<b>Run Name: </b> " + run.getName()); sb.append("<br/><br/>"); sb.append("<b>Platform: </b> " + run.getPlatformType().getKey()); sb.append("<br/><br/>"); sb.append("<b>Sequencer: </b> " + run.getSequencerReference().getName()); sb.append("<br/><br/>"); if (incAlias) { sb.append("<b>Run Alias: </b> " + run.getAlias()); sb.append("<br/><br/>"); } if (incDescription) { sb.append("<b>Run Description: </b> " + run.getDescription()); sb.append("<br/><br/>"); } sb.append("<b>Pair End: </b> " + run.getPairedEnd().toString()); sb.append("<br/><br/>"); sb.append("<b>Status: </b> " + run.getStatus().getHealth().getKey()); sb.append("<br/><br/>"); } // Lists of Runs report else if (reportables.size() > 1) { sb.append("<h1>Runs Information</h1><br/><div class='report'>"); Map<String, Integer> statusMap = new HashMap<String, Integer>(); Map<String, Integer> platformMap = new HashMap<String, Integer>(); sb.append( "<table class=\"list\">\n" + " <thead>\n" + " <tr>\n" + " <th>Run Name</th>\n" + " <th>Platform</th>\n" + " <th>Sequencer</th>\n"); if (incAlias) { sb.append(" <th>Run Alias</th>\n"); } if (incDescription) { sb.append(" <th>Run Description</th>\n"); } sb.append(" <th>Pair End</th>\n" + " <th>Status</th>\n" + " </tr>\n" + " </thead>\n" + " <tbody>"); for (Reportable reportable : reportables) { Run run = (Run) reportable; sb.append("<tr><td>" + run.getName()); sb.append("</td>"); sb.append("<td> " + run.getPlatformType().getKey()); sb.append("</td>"); sb.append("<td> " + run.getSequencerReference().getName()); sb.append("</td>"); if (incAlias) { sb.append("<td> " + run.getAlias()); sb.append("</td>"); } if (incDescription) { sb.append("<td> " + run.getDescription()); sb.append("</td>"); } sb.append("<td> " + run.getPairedEnd().toString()); sb.append("</td>"); sb.append("<td> " + run.getStatus().getHealth().getKey()); sb.append("</td></tr>"); int statuscount = statusMap.containsKey(run.getStatus().getHealth().getKey()) ? statusMap.get(run.getStatus().getHealth().getKey()) : 0; statuscount++; statusMap.put(run.getStatus().getHealth().getKey(), statuscount); int platformcount = platformMap.containsKey(run.getPlatformType().getKey()) ? platformMap.get(run.getPlatformType().getKey()) : 0; platformcount++; platformMap.put(run.getPlatformType().getKey(), platformcount); } sb.append(" </tbody>\n" + "</table>"); Integer unknown = statusMap.containsKey("Unknown") ? statusMap.get("Unknown") : 0; Integer completed = statusMap.containsKey("Completed") ? statusMap.get("Completed") : 0; Integer failed = statusMap.containsKey("Failed") ? statusMap.get("Failed") : 0; Integer started = statusMap.containsKey("Started") ? statusMap.get("Started") : 0; Integer stopped = statusMap.containsKey("Stopped") ? statusMap.get("Stopped") : 0; Integer running = statusMap.containsKey("Running") ? statusMap.get("Running") : 0; //jfreechart for status final DefaultPieDataset data = new DefaultPieDataset(); data.setValue("Unknown " + unknown, unknown); data.setValue("Completed " + completed, completed); data.setValue("Failed " + failed, failed); data.setValue("Started " + started, started); data.setValue("Stopped " + stopped, stopped); data.setValue("Running " + running, running); final JFreeChart chart = ChartFactory.createPieChart("Run Status Information", // chart title data, // data false, // include legend true, false); final PiePlot plot = (PiePlot) chart.getPlot(); plot.setStartAngle(290); plot.setDirection(Rotation.CLOCKWISE); plot.setBackgroundPaint(Color.white); plot.setForegroundAlpha(0.5f); plot.setNoDataMessage("No data to display"); int r = generator.nextInt(); File runchart = new File("../webapps/ROOT/styles/images/runsstatuschart" + r + ".png"); try { ChartUtilities.saveChartAsPNG(runchart, chart, 500, 300); } catch (IOException e) { e.printStackTrace(); } if (chartbool) { sb.append("<br/><img src='/styles/images/runsstatuschart" + r + ".png'/>"); } // Integer illumina = platformMap.containsKey("Illumina") ? platformMap.get("Illumina") : 0; // Integer ls454 = platformMap.containsKey("LS454") ? platformMap.get("LS454") : 0; // Integer solid = platformMap.containsKey("Solid") ? platformMap.get("Solid") : 0; //jfreechart for platform // final DefaultPieDataset platformdata = new DefaultPieDataset(); // platformdata.setValue("Illumina "+illumina, illumina); // platformdata.setValue("LS454 "+ls454, ls454); // platformdata.setValue("Solid "+solid, solid); // // final JFreeChart platformchart = ChartFactory.createPieChart( // "Run Platform Information", // chart title // platformdata, // data // false, // include legend // true, // false // ); // // final PiePlot platformplot = (PiePlot) platformchart.getPlot(); // platformplot.setStartAngle(290); // platformplot.setDirection(Rotation.CLOCKWISE); // platformplot.setBackgroundPaint(Color.white); // platformplot.setForegroundAlpha(0.5f); // platformplot.setNoDataMessage("No data to display"); // File runplatformchart = new File("../webapps/ROOT/styles/images/runsplatformchart" + r + ".png"); // try { // ChartUtilities.saveChartAsPNG(runplatformchart, platformchart, 500, 300); // } // catch (IOException e) { // e.printStackTrace(); // } // if (chartbool) { // sb.append(" <img src='/styles/images/runsplatformchart" + r + ".png'/>"); // } } else { sb.append("<h1>Run Information</h1><br/><div class='report'>Nothing to Report."); } } // footer sb.append("</div>\n" + "<div id=\"footer\">\n" + " <br/>\n" + "\n" + " <p>© 2010 -2011 <a href=\"http://www.tgac.bbsrc.ac.uk/\" target=\"_blank\">The Genome Analysis Centre</a></p>\n" + "</div>\n" + "</body></html>"); // end of footer return sb.toString(); }