List of usage examples for org.jfree.chart.plot XYPlot setRangeMinorGridlinesVisible
public void setRangeMinorGridlinesVisible(boolean visible)
From source file:org.gwaspi.gui.reports.SampleQAHetzygPlotZoom.java
private JFreeChart createChart(XYDataset dataset) { JFreeChart chart = ChartFactory.createScatterPlot("Heterozygosity vs. Missing Ratio", "Heterozygosity Ratio", "Missing Ratio", dataset, PlotOrientation.VERTICAL, true, false, false); XYPlot plot = (XYPlot) chart.getPlot(); plot.setNoDataMessage("NO DATA"); plot.setDomainZeroBaselineVisible(true); plot.setRangeZeroBaselineVisible(true); // CHART BACKGROUD COLOR chart.setBackgroundPaint(Color.getHSBColor(0.1f, 0.1f, 1.0f)); // Hue, saturation, brightness plot.setBackgroundPaint(PLOT_MANHATTAN_BACKGROUND); // Hue, saturation, brightness 9 // GRIDLINES// w ww . j ava2 s.c o m plot.setDomainGridlineStroke(new BasicStroke(0.0f)); plot.setDomainMinorGridlineStroke(new BasicStroke(0.0f)); plot.setDomainGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker().darker()); // Hue, saturation, brightness 7 plot.setDomainMinorGridlinePaint(PLOT_MANHATTAN_BACKGROUND); // Hue, saturation, brightness 9 plot.setRangeGridlineStroke(new BasicStroke(0.0f)); plot.setRangeMinorGridlineStroke(new BasicStroke(0.0f)); plot.setRangeGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker().darker()); // Hue, saturation, brightness 7 plot.setRangeMinorGridlinePaint(PLOT_MANHATTAN_BACKGROUND.darker()); // Hue, saturation, brightness 8 plot.setDomainMinorGridlinesVisible(true); plot.setRangeMinorGridlinesVisible(true); // DOTS RENDERER XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesPaint(0, PLOT_MANHATTAN_DOTS); // renderer.setSeriesOutlinePaint(0, Color.DARK_GRAY); // renderer.setUseOutlinePaint(true); // Set dot shape of the currently appended Series renderer.setSeriesShape(0, new Rectangle2D.Double(-1, -1, 2, 2)); renderer.setSeriesVisibleInLegend(0, false); // AXIS double maxHetzy = 0.005; for (int i = 0; i < dataset.getItemCount(0); i++) { if (maxHetzy < dataset.getXValue(0, i)) { maxHetzy = dataset.getXValue(0, i); } } NumberAxis hetzyAxis = (NumberAxis) plot.getDomainAxis(); hetzyAxis.setAutoRangeIncludesZero(true); hetzyAxis.setAxisLineVisible(true); hetzyAxis.setTickLabelsVisible(true); hetzyAxis.setTickMarksVisible(true); hetzyAxis.setRange(0, maxHetzy * 1.1); double maxMissrat = 0.005; for (int i = 0; i < dataset.getItemCount(0); i++) { if (maxMissrat < dataset.getYValue(0, i)) { maxMissrat = dataset.getYValue(0, i); } } NumberAxis missratAxis = (NumberAxis) plot.getRangeAxis(); missratAxis.setAutoRangeIncludesZero(true); missratAxis.setAxisLineVisible(true); missratAxis.setTickLabelsVisible(true); missratAxis.setTickMarksVisible(true); missratAxis.setRange(0, maxMissrat * 1.1); // Add significance Threshold to subplot final Marker missingThresholdLine = new ValueMarker(missingThreshold); missingThresholdLine.setPaint(Color.blue); final Marker hetzyThresholdLine = new ValueMarker(hetzyThreshold); hetzyThresholdLine.setPaint(Color.blue); // Add legend to hetzyThreshold hetzyThresholdLine.setLabel("hetzyg. threshold = " + hetzyThreshold); missingThresholdLine.setLabel("missing. threshold = " + missingThreshold); hetzyThresholdLine.setLabelAnchor(RectangleAnchor.TOP_LEFT); hetzyThresholdLine.setLabelTextAnchor(TextAnchor.TOP_RIGHT); missingThresholdLine.setLabelAnchor(RectangleAnchor.BOTTOM_LEFT); missingThresholdLine.setLabelTextAnchor(TextAnchor.TOP_LEFT); plot.addRangeMarker(missingThresholdLine); // THIS FOR MISSING RATIO plot.addDomainMarker(hetzyThresholdLine); // THIS FOR HETZY RATIO // Marker label if below hetzyThreshold XYItemRenderer lblRenderer = plot.getRenderer(); // THRESHOLD AND SELECTED LABEL GENERATOR MySeriesItemLabelGenerator lblGenerator = new MySeriesItemLabelGenerator(hetzyThreshold, missingThreshold); lblRenderer.setSeriesItemLabelGenerator(0, lblGenerator); lblRenderer.setSeriesItemLabelFont(0, new Font("SansSerif", Font.PLAIN, 10)); lblRenderer.setSeriesPositiveItemLabelPosition(0, new ItemLabelPosition(ItemLabelAnchor.CENTER, TextAnchor.BOTTOM_LEFT, TextAnchor.BOTTOM_LEFT, 2 * Math.PI)); // TOOLTIP GENERATOR MyXYToolTipGenerator tooltipGenerator = new MyXYToolTipGenerator(); lblRenderer.setBaseToolTipGenerator(tooltipGenerator); lblRenderer.setSeriesItemLabelsVisible(0, true); return chart; }
From source file:org.gwaspi.gui.reports.ManhattanPlotZoom.java
private JFreeChart createChart(XYDataset dataset, ChromosomeKey chr) { JFreeChart chart = ChartFactory.createScatterPlot(null, "", "P value", dataset, PlotOrientation.VERTICAL, true, false, false);//from w w w .j av a 2 s . c o m XYPlot plot = (XYPlot) chart.getPlot(); plot.setNoDataMessage("NO DATA"); plot.setDomainZeroBaselineVisible(true); plot.setRangeZeroBaselineVisible(true); // CHART BACKGROUD COLOR chart.setBackgroundPaint(Color.getHSBColor(0.1f, 0.1f, 1.0f)); // Hue, saturation, brightness plot.setBackgroundPaint(manhattan_back); // Hue, saturation, brightness 9 // GRIDLINES plot.setDomainGridlineStroke(new BasicStroke(0.0f)); plot.setDomainMinorGridlineStroke(new BasicStroke(0.0f)); plot.setDomainGridlinePaint(manhattan_back.darker().darker()); // Hue, saturation, brightness 7 plot.setDomainMinorGridlinePaint(manhattan_back); // Hue, saturation, brightness 9 plot.setRangeGridlineStroke(new BasicStroke(0.0f)); plot.setRangeMinorGridlineStroke(new BasicStroke(0.0f)); plot.setRangeGridlinePaint(manhattan_back.darker().darker()); // Hue, saturation, brightness 7 plot.setRangeMinorGridlinePaint(manhattan_back.darker()); // Hue, saturation, brightness 8 plot.setDomainMinorGridlinesVisible(true); plot.setRangeMinorGridlinesVisible(true); // DOTS RENDERER XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setSeriesPaint(0, manhattan_dot); // renderer.setSeriesOutlinePaint(0, Color.DARK_GRAY); // renderer.setUseOutlinePaint(true); // Set dot shape of the currently appended Series renderer.setSeriesShape(0, new Rectangle2D.Double(0.0, 0.0, 2, 2)); renderer.setSeriesVisibleInLegend(0, false); NumberAxis positionAxis = (NumberAxis) plot.getDomainAxis(); // domainAxis.setAutoRangeIncludesZero(false); // domainAxis.setTickMarkInsideLength(2.0f); // domainAxis.setTickMarkOutsideLength(2.0f); // domainAxis.setMinorTickCount(2); // domainAxis.setMinorTickMarksVisible(true); positionAxis.setLabelAngle(1.0); positionAxis.setAutoRangeIncludesZero(false); positionAxis.setAxisLineVisible(true); positionAxis.setTickLabelsVisible(true); positionAxis.setTickMarksVisible(true); // ADD INVERSE LOG(10) Y AXIS LogAxis logPAxis = new LogAxis("P value"); logPAxis.setBase(10); logPAxis.setInverted(true); logPAxis.setNumberFormatOverride(GenericReportGenerator.FORMAT_P_VALUE); logPAxis.setTickMarkOutsideLength(2.0f); logPAxis.setMinorTickCount(2); logPAxis.setMinorTickMarksVisible(true); logPAxis.setAxisLineVisible(true); logPAxis.setUpperMargin(0); TickUnitSource units = NumberAxis.createIntegerTickUnits(); logPAxis.setStandardTickUnits(units); plot.setRangeAxis(0, logPAxis); // Add significance Threshold to subplot //threshold = 0.5/rdMatrixMetadata.getMarkerSetSize(); // (0.05/10? SNPs => 5*10-?) final Marker thresholdLine = new ValueMarker(threshold); thresholdLine.setPaint(Color.red); // Add legend to threshold thresholdLine.setLabel("P = " + GenericReportGenerator.FORMAT_P_VALUE.format(threshold)); thresholdLine.setLabelAnchor(RectangleAnchor.TOP_RIGHT); thresholdLine.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT); plot.addRangeMarker(thresholdLine); // Marker label if below threshold XYItemRenderer lblRenderer = plot.getRenderer(); // THRESHOLD AND SELECTED LABEL GENERATOR MySeriesItemLabelGenerator lblGenerator = new MySeriesItemLabelGenerator(threshold, chr); lblRenderer.setSeriesItemLabelGenerator(0, lblGenerator); lblRenderer.setSeriesItemLabelFont(0, new Font("SansSerif", Font.PLAIN, 12)); lblRenderer.setSeriesPositiveItemLabelPosition(0, new ItemLabelPosition(ItemLabelAnchor.CENTER, TextAnchor.TOP_LEFT, TextAnchor.BOTTOM_LEFT, Math.PI / 4.0)); // TOOLTIP GENERATOR MyXYToolTipGenerator tooltipGenerator = new MyXYToolTipGenerator(chr); lblRenderer.setBaseToolTipGenerator(tooltipGenerator); lblRenderer.setSeriesItemLabelsVisible(0, true); return chart; }
From source file:org.webcat.grader.graphs.StackedAreaChart.java
@Override protected JFreeChart generateChart(WCChartTheme chartTheme) { JFreeChart chart = ChartFactory.createStackedXYAreaChart(null, xAxisLabel(), yAxisLabel(), tableXYDataset(), orientation(), true, false, false); XYPlot plot = chart.getXYPlot(); long diff = (long) tableXYDataset().getXValue(0, tableXYDataset().getItemCount() - 1) - (long) tableXYDataset().getXValue(0, 0); GregorianCalendar calDiff = new GregorianCalendar(); calDiff.setTime(new NSTimestamp(diff)); // Set the time axis PeriodAxis axis = new PeriodAxis(null); // ( "Date" ); PeriodAxisLabelInfo labelinfo[] = new PeriodAxisLabelInfo[2]; if (calDiff.get(Calendar.DAY_OF_YEAR) > 1) { axis.setTimeZone(TimeZone.getTimeZone(user().timeZoneName())); axis.setAutoRangeTimePeriodClass(org.jfree.data.time.Day.class); axis.setMajorTickTimePeriodClass(org.jfree.data.time.Week.class); labelinfo[0] = new PeriodAxisLabelInfo(org.jfree.data.time.Day.class, new SimpleDateFormat("d"), PeriodAxisLabelInfo.DEFAULT_INSETS, chartTheme.smallFont(), chartTheme.textColor(), true, PeriodAxisLabelInfo.DEFAULT_DIVIDER_STROKE, PeriodAxisLabelInfo.DEFAULT_DIVIDER_PAINT); labelinfo[1] = new PeriodAxisLabelInfo(org.jfree.data.time.Month.class, new SimpleDateFormat("MMM"), PeriodAxisLabelInfo.DEFAULT_INSETS, chartTheme.smallFont(), chartTheme.textColor(), true, PeriodAxisLabelInfo.DEFAULT_DIVIDER_STROKE, PeriodAxisLabelInfo.DEFAULT_DIVIDER_PAINT); } else {/*from w w w . ja va 2s . com*/ axis.setAutoRangeTimePeriodClass(org.jfree.data.time.Hour.class); labelinfo[0] = new PeriodAxisLabelInfo(org.jfree.data.time.Day.class, new SimpleDateFormat("ha"), PeriodAxisLabelInfo.DEFAULT_INSETS, chartTheme.smallFont(), chartTheme.textColor(), true, PeriodAxisLabelInfo.DEFAULT_DIVIDER_STROKE, PeriodAxisLabelInfo.DEFAULT_DIVIDER_PAINT); labelinfo[1] = new PeriodAxisLabelInfo(org.jfree.data.time.Month.class, new SimpleDateFormat("MMM-d"), PeriodAxisLabelInfo.DEFAULT_INSETS, chartTheme.smallFont(), chartTheme.textColor(), true, PeriodAxisLabelInfo.DEFAULT_DIVIDER_STROKE, PeriodAxisLabelInfo.DEFAULT_DIVIDER_PAINT); } axis.setLabelInfo(labelinfo); plot.setDomainAxis(axis); NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); NumberTickUnit tickUnit = new NumberTickUnit(5); rangeAxis.setTickUnit(tickUnit); XYAreaRenderer2 renderer = (XYAreaRenderer2) plot.getRenderer(); renderer.setOutline(true); renderer.setAutoPopulateSeriesOutlinePaint(true); plot.setDomainMinorGridlinesVisible(false); plot.setRangeMinorGridlinesVisible(false); if (markValue != null) { plot.setDomainCrosshairVisible(true); plot.setDomainCrosshairValue(markValue.doubleValue()); plot.setDomainCrosshairPaint(Color.red); plot.setDomainCrosshairStroke(MARKER_STROKE); } chart.getLegend().setBorder(0, 0, 0, 0); return chart; }