List of usage examples for org.jfree.chart.plot XYPlot setSeriesRenderingOrder
public void setSeriesRenderingOrder(SeriesRenderingOrder order)
From source file:org.locationtech.udig.processingtoolbox.tools.BubbleChartDialog.java
private void updateChart(SimpleFeatureCollection features, String xField, String yField, String sizeField) { // 1. Create a single plot containing both the scatter and line XYPlot plot = new XYPlot(); plot.setOrientation(PlotOrientation.VERTICAL); plot.setBackgroundPaint(java.awt.Color.WHITE); plot.setDomainPannable(false);/*from w ww . j a v a 2 s. c o m*/ plot.setRangePannable(false); plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD); plot.setDomainCrosshairVisible(false); plot.setRangeCrosshairVisible(false); plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0)); plot.setForegroundAlpha(0.75f); // 2. Setup Scatter plot // Create the bubble chart data, renderer, and axis int fontStyle = java.awt.Font.BOLD; FontData fontData = getShell().getDisplay().getSystemFont().getFontData()[0]; NumberAxis xPlotAxis = new NumberAxis(xField); // Independent variable xPlotAxis.setLabelFont(new Font(fontData.getName(), fontStyle, 12)); xPlotAxis.setTickLabelFont(new Font(fontData.getName(), fontStyle, 10)); NumberAxis yPlotAxis = new NumberAxis(yField); // Dependent variable yPlotAxis.setLabelFont(new Font(fontData.getName(), fontStyle, 12)); yPlotAxis.setTickLabelFont(new Font(fontData.getName(), fontStyle, 10)); XYItemRenderer plotRenderer = new XYBubbleRenderer(XYBubbleRenderer.SCALE_ON_RANGE_AXIS); plotRenderer.setSeriesPaint(0, java.awt.Color.ORANGE); // dot plotRenderer.setBaseItemLabelGenerator(new BubbleXYItemLabelGenerator()); plotRenderer.setBaseToolTipGenerator(new StandardXYZToolTipGenerator()); plotRenderer .setBasePositiveItemLabelPosition(new ItemLabelPosition(ItemLabelAnchor.CENTER, TextAnchor.CENTER)); // Set the bubble chart data, renderer, and axis into plot plot.setDataset(0, getBubbleChartData(features, xField, yField, sizeField)); xPlotAxis.setAutoRangeIncludesZero(false); xPlotAxis.setAutoRange(false); double differUpper = minMaxVisitor.getMaxX() - minMaxVisitor.getAverageX(); double differLower = minMaxVisitor.getAverageX() - minMaxVisitor.getMinX(); double gap = Math.abs(differUpper - differLower); if (differUpper > differLower) { xPlotAxis.setRange(minMaxVisitor.getMinX() - gap, minMaxVisitor.getMaxX()); } else { xPlotAxis.setRange(minMaxVisitor.getMinX(), minMaxVisitor.getMaxX() + gap); } yPlotAxis.setAutoRangeIncludesZero(false); yPlotAxis.setAutoRange(false); differUpper = minMaxVisitor.getMaxY() - minMaxVisitor.getAverageY(); differLower = minMaxVisitor.getAverageY() - minMaxVisitor.getMinY(); gap = Math.abs(differUpper - differLower); if (differUpper > differLower) { yPlotAxis.setRange(minMaxVisitor.getMinY() - gap, minMaxVisitor.getMaxY()); } else { yPlotAxis.setRange(minMaxVisitor.getMinY(), minMaxVisitor.getMaxY() + gap); } plot.setRenderer(0, plotRenderer); plot.setDomainAxis(0, xPlotAxis); plot.setRangeAxis(0, yPlotAxis); // Map the scatter to the first Domain and first Range plot.mapDatasetToDomainAxis(0, 0); plot.mapDatasetToRangeAxis(0, 0); // 3. Setup line // Create the line data, renderer, and axis XYItemRenderer lineRenderer = new XYLineAndShapeRenderer(true, false); // Lines only lineRenderer.setSeriesPaint(0, java.awt.Color.GRAY); lineRenderer.setSeriesPaint(1, java.awt.Color.GRAY); lineRenderer.setSeriesPaint(2, java.awt.Color.GRAY); // Set the line data, renderer, and axis into plot NumberAxis xLineAxis = new NumberAxis(EMPTY); xLineAxis.setTickMarksVisible(false); xLineAxis.setTickLabelsVisible(false); NumberAxis yLineAxis = new NumberAxis(EMPTY); yLineAxis.setTickMarksVisible(false); yLineAxis.setTickLabelsVisible(false); XYSeriesCollection lineDataset = new XYSeriesCollection(); // AverageY XYSeries horizontal = new XYSeries("AverageY"); //$NON-NLS-1$ horizontal.add(xPlotAxis.getRange().getLowerBound(), minMaxVisitor.getAverageY()); horizontal.add(xPlotAxis.getRange().getUpperBound(), minMaxVisitor.getAverageY()); lineDataset.addSeries(horizontal); // AverageX XYSeries vertical = new XYSeries("AverageX"); //$NON-NLS-1$ vertical.add(minMaxVisitor.getAverageX(), yPlotAxis.getRange().getLowerBound()); vertical.add(minMaxVisitor.getAverageX(), yPlotAxis.getRange().getUpperBound()); lineDataset.addSeries(vertical); plot.setDataset(1, lineDataset); plot.setRenderer(1, lineRenderer); plot.setDomainAxis(1, xLineAxis); plot.setRangeAxis(1, yLineAxis); // Map the line to the second Domain and second Range plot.mapDatasetToDomainAxis(1, 0); plot.mapDatasetToRangeAxis(1, 0); // 4. Setup Selection NumberAxis xSelectionAxis = new NumberAxis(EMPTY); xSelectionAxis.setTickMarksVisible(false); xSelectionAxis.setTickLabelsVisible(false); NumberAxis ySelectionAxis = new NumberAxis(EMPTY); ySelectionAxis.setTickMarksVisible(false); ySelectionAxis.setTickLabelsVisible(false); XYItemRenderer selectionRenderer = new XYBubbleRenderer(XYBubbleRenderer.SCALE_ON_RANGE_AXIS); selectionRenderer.setSeriesPaint(0, java.awt.Color.RED); // dot selectionRenderer.setSeriesOutlinePaint(0, java.awt.Color.RED); plot.setDataset(2, new DefaultXYZDataset2()); plot.setRenderer(2, selectionRenderer); plot.setDomainAxis(2, xSelectionAxis); plot.setRangeAxis(2, ySelectionAxis); // Map the scatter to the second Domain and second Range plot.mapDatasetToDomainAxis(2, 0); plot.mapDatasetToRangeAxis(2, 0); // 5. Finally, Create the chart with the plot and a legend java.awt.Font titleFont = new Font(fontData.getName(), fontStyle, 20); JFreeChart chart = new JFreeChart(EMPTY, titleFont, plot, false); chart.setBackgroundPaint(java.awt.Color.WHITE); chart.setBorderVisible(false); chartComposite.setChart(chart); chartComposite.forceRedraw(); }
From source file:com.vgi.mafscaling.Rescale.java
private void createGraghPanel(JPanel dataPanel) { JFreeChart chart = ChartFactory.createScatterPlot(null, null, null, null, PlotOrientation.VERTICAL, false, true, false);/*from w ww. ja v a 2 s . co m*/ chart.setBorderVisible(true); mafChartPanel = new MafChartPanel(chart, this); GridBagConstraints gbl_chartPanel = new GridBagConstraints(); gbl_chartPanel.anchor = GridBagConstraints.PAGE_START; gbl_chartPanel.insets = insets0; gbl_chartPanel.fill = GridBagConstraints.BOTH; gbl_chartPanel.weightx = 1.0; gbl_chartPanel.weighty = 1.0; gbl_chartPanel.gridx = 0; gbl_chartPanel.gridy = 2; dataPanel.add(mafChartPanel.getChartPanel(), gbl_chartPanel); XYSplineRenderer lineRenderer = new XYSplineRenderer(3); lineRenderer.setUseFillPaint(true); lineRenderer.setBaseToolTipGenerator( new StandardXYToolTipGenerator(StandardXYToolTipGenerator.DEFAULT_TOOL_TIP_FORMAT, new DecimalFormat("0.00"), new DecimalFormat("0.00"))); Stroke stroke = new BasicStroke(2.0f, BasicStroke.CAP_ROUND, BasicStroke.JOIN_ROUND, 1.0f, null, 0.0f); lineRenderer.setSeriesStroke(0, stroke); lineRenderer.setSeriesStroke(1, stroke); lineRenderer.setSeriesPaint(0, new Color(201, 0, 0)); lineRenderer.setSeriesPaint(1, new Color(0, 0, 255)); lineRenderer.setSeriesShape(0, ShapeUtilities.createDiamond((float) 2.5)); lineRenderer.setSeriesShape(1, ShapeUtilities.createUpTriangle((float) 2.5)); ValueAxis mafvDomain = new NumberAxis(XAxisName); ValueAxis mafgsRange = new NumberAxis(YAxisName); XYSeriesCollection lineDataset = new XYSeriesCollection(); lineDataset.addSeries(currMafData); lineDataset.addSeries(corrMafData); XYPlot plot = chart.getXYPlot(); plot.setRangePannable(true); plot.setDomainPannable(true); plot.setDomainGridlinePaint(Color.DARK_GRAY); plot.setRangeGridlinePaint(Color.DARK_GRAY); plot.setBackgroundPaint(new Color(224, 224, 224)); plot.setSeriesRenderingOrder(SeriesRenderingOrder.FORWARD); plot.setDataset(0, lineDataset); plot.setRenderer(0, lineRenderer); plot.setDomainAxis(0, mafvDomain); plot.setRangeAxis(0, mafgsRange); plot.mapDatasetToDomainAxis(0, 0); plot.mapDatasetToRangeAxis(0, 0); LegendTitle legend = new LegendTitle(plot.getRenderer()); legend.setItemFont(new Font("Arial", 0, 10)); legend.setPosition(RectangleEdge.TOP); chart.addLegend(legend); }
From source file:web.diva.server.unused.PCAGenerator.java
public PCAImageResult generateChart(String path, PCAResults pcaResults, int[] subSelectionData, int[] selection, boolean zoom, boolean selectAll, String imgName, double w, double h, DivaDataset divaDataset) { XYDataset dataset = this.createDataset(pcaResults.getPoints(), subSelectionData, selection, zoom, divaDataset);/* www .j a v a 2s. com*/ final JFreeChart chart = ChartFactory.createScatterPlot("", // chart title "Principal Component" + (pcaResults.getPcai() + 1), // x axis label "Principal Component " + (pcaResults.getPcaii() + 1), // y axis label dataset, // data PlotOrientation.VERTICAL, false, // include legend true, // tooltips false // urls ); final XYPlot plot = chart.getXYPlot(); plot.setBackgroundPaint(Color.WHITE); plot.setDomainGridlinePaint(Color.WHITE); plot.setRangeGridlinePaint(Color.WHITE); XYDotRenderer renderer = new XYDotRenderer(); renderer.setDotHeight(5); renderer.setDotWidth(5); if (selectAll) { int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { col = "#000000"; } renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); i++; } } else if (selection == null) { renderer.setPaint(Color.LIGHT_GRAY); int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { col = "#000000"; } renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); i++; } } else { int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { renderer.setSeriesPaint(i, Color.LIGHT_GRAY); } else { renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); } i++; } } plot.setRenderer(renderer); plot.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); NumberAxis xAxis = new NumberAxis("Principal Component" + (pcaResults.getPcai() + 1)); xAxis.setVerticalTickLabels(true); boolean auto = xAxis.getAutoRangeIncludesZero(); xAxis.setAutoRangeIncludesZero(true ^ auto); NumberAxis yAxis = new NumberAxis("Principal Component" + (pcaResults.getPcaii() + 1)); yAxis.setAutoRangeIncludesZero(true ^ auto); yAxis.setTickUnit(new NumberTickUnit(1)); plot.setDomainAxis(0, xAxis); plot.setRangeAxis(0, yAxis); double MaxX = xAxis.getRange().getUpperBound(); double MinX = xAxis.getRange().getLowerBound(); double MaxY = yAxis.getRange().getUpperBound(); double MinY = yAxis.getRange().getLowerBound(); chartRenderingInfo.clear(); String imgUrl = imgGenerator.saveToFile(chart, w, h, chartRenderingInfo); PCAImageResult imgUtilRes = new PCAImageResult(); imgUtilRes.setImgString(imgUrl); imgUtilRes.setDataAreaMaxX(chartRenderingInfo.getPlotInfo().getDataArea().getMaxX()); imgUtilRes.setDataAreaMaxY(chartRenderingInfo.getPlotInfo().getDataArea().getMaxY()); imgUtilRes.setDataAreaMinY(chartRenderingInfo.getPlotInfo().getDataArea().getMinY()); imgUtilRes.setDataAreaMinX(chartRenderingInfo.getPlotInfo().getDataArea().getMinX()); imgUtilRes.setMaxX(MaxX); imgUtilRes.setMaxY(MaxY); imgUtilRes.setMinX(MinX); imgUtilRes.setMinY(MinY); return imgUtilRes; }
From source file:web.diva.server.model.PCAGenerator.java
public PCAImageResult generateChart(String path, PCAResults pcaResults, int[] subSelectionData, int[] selection, boolean zoom, boolean selectAll, String imgName, double w, double h, DivaDataset divaDataset) { XYDataset dataset = this.createDataset(pcaResults.getPoints(), subSelectionData, selection, zoom, divaDataset);//from w w w . j a v a2 s . com final JFreeChart chart = ChartFactory.createScatterPlot("", // chart title "Principal Component" + (pcaResults.getPcai() + 1), // x axis label "Principal Component " + (pcaResults.getPcaii() + 1), // y axis label dataset, // data PlotOrientation.VERTICAL, false, // include legend true, // tooltips false // urls ); final XYPlot plot = chart.getXYPlot(); plot.setBackgroundPaint(Color.WHITE); plot.setDomainGridlinePaint(Color.WHITE); plot.setRangeGridlinePaint(Color.WHITE); XYDotRenderer renderer = new XYDotRenderer(); renderer.setDotHeight(5); renderer.setDotWidth(5); if (selectAll) { int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { col = "#000000"; } renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); i++; } } else if (selection == null) { renderer.setPaint(Color.LIGHT_GRAY); int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { col = "#000000"; } renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); i++; } } else { int i = 0; for (String col : seriesList.keySet()) { if (col.equalsIgnoreCase("unGrouped")) { renderer.setSeriesPaint(i, Color.LIGHT_GRAY); } else { renderer.setSeriesPaint(i, imgGenerator.hex2Rgb(col)); } i++; } } plot.setRenderer(renderer); plot.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); NumberAxis xAxis = new NumberAxis("Principal Component" + (pcaResults.getPcai() + 1)); xAxis.setVerticalTickLabels(true); boolean auto = xAxis.getAutoRangeIncludesZero(); xAxis.setAutoRangeIncludesZero(true ^ auto); NumberAxis yAxis = new NumberAxis("Principal Component" + (pcaResults.getPcaii() + 1)); yAxis.setAutoRangeIncludesZero(true ^ auto); yAxis.setTickUnit(new NumberTickUnit(1)); plot.setDomainAxis(0, xAxis); plot.setRangeAxis(0, yAxis); double MaxX = xAxis.getRange().getUpperBound(); double MinX = xAxis.getRange().getLowerBound(); double MaxY = yAxis.getRange().getUpperBound(); double MinY = yAxis.getRange().getLowerBound(); chartRenderingInfo.clear(); String imgUrl = imgGenerator.saveToFile(chart, w, h, path, chartRenderingInfo, imgName); PCAImageResult imgUtilRes = new PCAImageResult(); imgUtilRes.setImgString(imgUrl); imgUtilRes.setDataAreaMaxX(chartRenderingInfo.getPlotInfo().getDataArea().getMaxX()); imgUtilRes.setDataAreaMaxY(chartRenderingInfo.getPlotInfo().getDataArea().getMaxY()); imgUtilRes.setDataAreaMinY(chartRenderingInfo.getPlotInfo().getDataArea().getMinY()); imgUtilRes.setDataAreaMinX(chartRenderingInfo.getPlotInfo().getDataArea().getMinX()); imgUtilRes.setMaxX(MaxX); imgUtilRes.setMaxY(MaxY); imgUtilRes.setMinX(MinX); imgUtilRes.setMinY(MinY); return imgUtilRes; }
From source file:org.fhcrc.cpl.viewer.gui.MRMDialog.java
/** * Draw a chart in a panel. Good for precursors and daughters * @param parentPanel//from w ww .ja v a2 s . co m * @param dataset * @param domainMin * @param domainMax * @param supplier * @param wg */ protected void createChartInPanel(JPanel parentPanel, XYSeriesCollection dataset, Double domainMin, Double domainMax, DrawingSupplier supplier, whichGraph wg) { if (precursorChromatogramEmpty(transitionOnPlot) && wg == whichGraph.Precursor) { precursorContainerContainerPanel.setVisible(false); if (this.getWidth() >= 100 && this.getHeight() >= 100) this.setPreferredSize(new Dimension(this.getWidth(), this.getHeight())); pack(); return; } switch (wg) { case Precursor: clearPreviousChartJunk(oldPrecursorChart); oldPrecursorChart = null; break; case Daughter: clearPreviousChartJunk(oldProductChart); oldProductChart = null; break; } JFreeChart chart = ChartFactory.createXYLineChart(null, "seconds", null, dataset, PlotOrientation.VERTICAL, true, false, false); chart.setBackgroundPaint(new Color(220, 220, 220)); XYPlot xyp = (XYPlot) (chart.getPlot()); xyp.setBackgroundPaint(Color.WHITE); xyp.setDomainGridlinesVisible(true); xyp.setRangeGridlinesVisible(true); xyp.setDomainGridlinePaint(Color.LIGHT_GRAY); xyp.setRangeGridlinePaint(Color.LIGHT_GRAY); if (supplier != null) { xyp.setDrawingSupplier(supplier); } else { xyp.setDrawingSupplier(Utils.plainDrawingSupplier(Color.LIGHT_GRAY)); } xyp.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); CenterZoomNumberAxis axisDomain = new CenterZoomNumberAxis("seconds"); axisDomain.setAutoRangeIncludesZero(false); axisDomain.setRange(Math.max(0.0, domainMin), domainMax); axisDomain.addChangeListener(new domainAxisZoomCoordinator(axisDomain)); xyp.clearAnnotations(); xyp.setDomainAxis(axisDomain); xyp.getDomainAxis().setAutoRange(false); xyp.getRangeAxis().setAutoRange(false); XYLineAndShapeRenderer xylsr = (XYLineAndShapeRenderer) xyp.getRenderer(); xylsr.setLegendLine(Utils.legendThing(16, 6)); xylsr.setShapesFilled(true); xylsr.setBaseShapesFilled(true); PanelWithChart panelWithChart = new PanelWithChart(chart); ChartPanel cp = panelWithChart.getChartPanel(); cp.removeMouseListener(cp); cp.removeMouseMotionListener(cp); if (peaksTable != null) { MRMerMouseListener mml = new MRMerMouseListener(cp, (PeaksTableModel) peaksTable.getModel()); cp.addMouseListener(mml); cp.addMouseMotionListener(mml); } cp.setPreferredSize(new Dimension(parentPanel.getWidth(), parentPanel.getHeight() - 10)); cp.setDomainZoomable(true); cp.setRangeZoomable(false); cp.setPopupMenu(null); parentPanel.removeAll(); parentPanel.add(panelWithChart); switch (wg) { case Precursor: createChartInPanelPrecursorTasksOnly(xyp); oldPrecursorChart = xyp; break; case Daughter: createChartInPanelDaughterTasksOnly(xyp); oldProductChart = xyp; break; } parentPanel.updateUI(); listTransition.requestFocus(); }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.ProteinStudyComparisonScatterPlotLayout.java
/** * Creates a sample jFreeChart.// ww w. j a va2s .c o m * * @param dataset the dataset. * * @return The jFreeChart. */ private void generateScatterplotchart(DiseaseGroupsComparisonsProteinLayout cp, int w, int h) { final XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries downSer = new XYSeries(0); XYSeries stableSer = new XYSeries(1); XYSeries upSer = new XYSeries(2); XYSeries novalueProvidedSer = new XYSeries(3); XYSeries downSerII = new XYSeries(4); XYSeries stableSerII = new XYSeries(5); XYSeries upSerII = new XYSeries(6); XYSeries novalueProvidedSerII = new XYSeries(7); // XYSeries plusSeries = new XYSeries(6); double downCounter = 1; double stableCounter = 3; double upCounter = 5; double novalueProvidedCounter = 3; patientGroupsNumToDsIdMap.clear(); final Map<Integer, int[]> paTGrNumbtrendMap = new HashMap<Integer, int[]>(); double maxPatNumber = -1.0; for (String protTrend : cp.getPatientsNumToTrindMap().keySet()) { List<Integer> patNums = cp.getPatientsNumToTrindMap().get(protTrend); int coun = 0; for (int i : patNums) { if (i > maxPatNumber) { maxPatNumber = i; } if (!patientGroupsNumToDsIdMap.containsKey(i)) { ComparisonDetailsBean pGr = new ComparisonDetailsBean(); patientGroupsNumToDsIdMap.put(i, pGr); } if (!paTGrNumbtrendMap.containsKey(i)) { int[] values = new int[4]; paTGrNumbtrendMap.put(i, values); } int[] values = paTGrNumbtrendMap.get(i); ComparisonDetailsBean pGr = patientGroupsNumToDsIdMap.get(i); if (protTrend.equalsIgnoreCase("noValueProvided")) { values[3] = values[3] + 1; pGr.addNovalueProvided(cp.getDSID(3, coun)); } else if (protTrend.equalsIgnoreCase("up")) { values[2] = values[2] + 1; pGr.addUpRegulated(cp.getDSID(0, coun)); } else if (protTrend.equalsIgnoreCase("down")) { values[0] = values[0] + 1; pGr.addDownRegulated(cp.getDSID(2, coun)); } else { values[1] = values[1] + 1; pGr.addNotRegulated(cp.getDSID(1, coun)); } paTGrNumbtrendMap.put(i, values); patientGroupsNumToDsIdMap.put(i, pGr); coun++; } } for (int i : paTGrNumbtrendMap.keySet()) { int[] values = paTGrNumbtrendMap.get(i); if ((values[2] > 1)) { upSer.add(upCounter, i); upSerII.add(upCounter, i); } else if ((values[2] == 1)) { upSer.add(upCounter, i); } if ((values[1] == 1)) { stableSer.add(stableCounter, i); } else if ((values[1] > 1)) { stableSer.add(stableCounter, i); stableSerII.add(stableCounter, i); } if ((values[0] > 1)) { downSer.add(downCounter, i); downSerII.add(downCounter, i); } else if ((values[0] == 1)) { downSer.add(downCounter, i); } if ((values[3] == 1)) { novalueProvidedSer.add(novalueProvidedCounter, i); } else if ((values[3] > 1)) { novalueProvidedSer.add(stableCounter, i); novalueProvidedSerII.add(stableCounter, i); } } dataset.addSeries(downSer); dataset.addSeries(stableSer); dataset.addSeries(upSer); dataset.addSeries(novalueProvidedSer); dataset.addSeries(downSerII); dataset.addSeries(stableSerII); dataset.addSeries(upSerII); dataset.addSeries(novalueProvidedSerII); // if((downSerII.getItemCount()+stableSerII.getItemCount()+upSerII.getItemCount()+downSer.getItemCount()+stableSer.getItemCount()+upSer.getItemCount())==0) // return; // dataset.addSeries(plusSeries); final String[] labels = new String[] { " ", ("Decreased (" + cp.getSignificantDown() + ")"), " ", ("Equal (" + cp.getStable() + ")"), " ", ("Increased (" + cp.getSignificantUp() + ")"), "" }; final Color[] labelsColor = new Color[] { Color.LIGHT_GRAY, new Color(80, 183, 71), Color.LIGHT_GRAY, new Color(1, 141, 244), Color.LIGHT_GRAY, Color.RED, Color.LIGHT_GRAY }; final SymbolAxis domainAxis = new SymbolAxis("X", labels) { @Override protected void drawGridBandsVertical(Graphics2D g2, Rectangle2D drawArea, Rectangle2D plotArea, boolean firstGridBandIsDark, List ticks) { List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } // System.out.println("at ticks is "+ticks); // System.out.println("at udatedTicksList is "+udatedTicksList); // int factor = (int) ((plotArea.getHeight() / 5) * 0.25); // // Rectangle2D up = new Rectangle((int) drawArea.getX(), (int) drawArea.getY() - factor, (int) drawArea.getWidth(), (int) drawArea.getHeight()); // Rectangle2D pa = new Rectangle((int) plotArea.getX(), (int) plotArea.getY() - factor, (int) plotArea.getWidth(), (int) plotArea.getHeight()); super.drawGridBandsVertical(g2, drawArea, plotArea, firstGridBandIsDark, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } int x = 0; @Override public Paint getTickLabelPaint() { if (x >= labels.length) { x = 0; } return labelsColor[x++]; } }; domainAxis.setAutoRangeIncludesZero(false); Font f = new Font("Verdana", Font.PLAIN, 11); domainAxis.setTickLabelFont(f); domainAxis.setAutoRange(false); domainAxis.setLabel(null); // domainAxis.setGridBandsVisible(false); String xTile = "#Patients"; JFreeChart jFreeChart = ChartFactory.createScatterPlot(null, null, // domain axis label null, // range axis label dataset, // data PlotOrientation.HORIZONTAL, // orientation false, // include legend false, // tooltips? false // URLs? ); XYPlot plot1 = (XYPlot) jFreeChart.getPlot(); XYPlot xyplot = new XYPlot(dataset, plot1.getDomainAxis(), plot1.getRangeAxis(), plot1.getRenderer()) { @Override public void drawDomainTickBands(Graphics2D g2, Rectangle2D dataArea, List ticks) { if (custTrend == -1) { super.drawDomainTickBands(g2, dataArea, ticks); return; } List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } Rectangle2D up; int factor = (int) ((dataArea.getHeight() / 5) * 0.5); if (custTrend == 4) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() + factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else if (custTrend == 2) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } super.drawDomainTickBands(g2, up, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } @Override protected void drawDomainGridlines(Graphics2D g2, Rectangle2D dataArea, List ticks) { super.drawDomainGridlines(g2, dataArea, ticks); //To change body of generated methods, choose Tools | Templates. } private int x = 0; @Override public Paint getDomainGridlinePaint() { if (x >= labels.length) { x = 0; } if (x == 1 || x == 3 || x == 5) { x++; return Color.WHITE; } else { x++; return super.getDomainGridlinePaint(); //To change body of generated methods, choose Tools | Templates. } } }; if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(Color.white); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(Color.white); } } else { domainAxis.setGridBandsVisible(false); } xyplot.setOrientation(PlotOrientation.HORIZONTAL); JFreeChart tempScatterPlot = new JFreeChart(xyplot); tempScatterPlot.setBackgroundPaint(Color.WHITE); tempScatterPlot.getLegend().setVisible(false); Color c = new Color(242, 242, 242); xyplot.setDomainAxis(domainAxis); xyplot.setDomainGridlinePaint(Color.GRAY); xyplot.setDomainGridlinesVisible(true); xyplot.setRangeGridlinesVisible(true); xyplot.setRangeGridlinePaint(Color.GRAY); xyplot.setOutlinePaint(Color.GRAY); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) xyplot.getRenderer(); ValueAxis va = xyplot.getDomainAxis(); va.setAutoRange(false); va.setMinorTickCount(0); va.setVisible(true); maxPatNumber = Math.ceil(maxPatNumber / 100.0) * 100; xyplot.getRangeAxis().setRange(0, maxPatNumber); NumberAxis rangeAxis = (NumberAxis) xyplot.getRangeAxis(); rangeAxis.setTickUnit(new NumberTickUnit(10)); rangeAxis.setLabel(xTile); rangeAxis.setLabelFont(f); rangeAxis.setLabelPaint(Color.GRAY); va.setRange(0, 6); xyplot.setBackgroundPaint(Color.WHITE); renderer.setUseOutlinePaint(true); Color c0 = new Color(80, 183, 71); renderer.setSeriesPaint(0, c0); renderer.setSeriesOutlinePaint(0, Color.WHITE); Color c1 = new Color(1, 141, 244); renderer.setSeriesPaint(1, c1); renderer.setSeriesOutlinePaint(1, Color.WHITE); Color c2 = new Color(204, 0, 0); renderer.setSeriesPaint(2, c2); renderer.setSeriesOutlinePaint(2, Color.WHITE); renderer.setSeriesPaint(3, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(3, Color.WHITE); renderer.setSeriesPaint(4, new Color(150, 212, 145)); renderer.setSeriesOutlinePaint(4, new Color(150, 212, 145)); renderer.setSeriesPaint(5, new Color(103, 187, 248)); renderer.setSeriesOutlinePaint(5, new Color(103, 187, 248)); renderer.setSeriesPaint(6, new Color(224, 102, 102)); renderer.setSeriesOutlinePaint(6, new Color(224, 102, 102)); renderer.setSeriesPaint(7, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(7, Color.GRAY); // renderer.setSeriesPaint(6, Color.BLACK); // renderer.setSeriesOutlinePaint(6, Color.BLACK); Shape downArr = ShapeUtilities.createDownTriangle(7f); Shape notRShape = ShapeUtilities.createDiamond(7f); Shape upArr = ShapeUtilities.createUpTriangle(7); Shape downArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDownTriangle(6f), 5, -5); Shape notRShapeII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDiamond(6f), 0, -7); Shape upArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createUpTriangle(6f), 4, -4); // Shape plus = ShapeUtilities.createTranslatedShape(ShapeUtilities.createRegularCross(3f, 0.4f), 11, -7); renderer.setSeriesShape(0, downArr); renderer.setSeriesShape(1, notRShape); renderer.setSeriesShape(2, upArr); renderer.setSeriesShape(3, notRShape); renderer.setSeriesShape(4, downArrII); renderer.setSeriesShape(5, notRShapeII); renderer.setSeriesShape(6, upArrII); renderer.setSeriesShape(7, notRShapeII); // renderer.setSeriesShape(6, plus); renderer.setBaseItemLabelsVisible(true); renderer.setBaseItemLabelGenerator(new SymbolicXYItemLabelGenerator() { private final int[] indexer = new int[] { 0, 1, 2, 3, 0, 1, 2, 3 }; @Override public String generateLabel(XYDataset dataset, int series, int category) { if (series > 3) { int patNumber = (int) dataset.getYValue(series, category); // int trend = (int) dataset.getXValue(series, category); if (series == 7 || series == 5) { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } else { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } } return ""; //To change body of generated methods, choose Tools | Templates. } }); ItemLabelPosition position = new ItemLabelPosition(ItemLabelAnchor.OUTSIDE12, TextAnchor.BASELINE_LEFT, TextAnchor.TOP_LEFT, 0.0); renderer.setSeriesPositiveItemLabelPosition(4, position); renderer.setSeriesPositiveItemLabelPosition(5, position); renderer.setSeriesPositiveItemLabelPosition(6, position); renderer.setSeriesPositiveItemLabelPosition(7, position); renderer.setBaseItemLabelFont(f); tempScatterPlot.setBorderVisible(false); xyplot.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); heighlightedScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); xyplot.setBackgroundPaint(Color.WHITE); defaultScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); // xyplot.setBackgroundPaint(c); if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(c); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(c); } } String textTitle = comparisonTitle.getValue().split("bold;'>")[1].replace("</font>", ""); TextTitle title = new TextTitle(textTitle, f); scatterPlot = new JFreeChart(xyplot); scatterPlot.setTitle(title); scatterPlot.setBorderVisible(false); scatterPlot.setBackgroundPaint(Color.WHITE); scatterPlot.getLegend().setVisible(false); dsKeyDatasetMap.clear(); for (int i = 0; i < defaultScatterPlotRenderingInfo.getEntityCollection().getEntityCount(); i++) { final ChartEntity entity = defaultScatterPlotRenderingInfo.getEntityCollection().getEntity(i); if (entity instanceof XYItemEntity) { int x = ((XYItemEntity) entity).getSeriesIndex(); int y = ((XYItemEntity) entity).getItem(); if (((XYItemEntity) entity).getDataset().getYValue(x, y) > (int) ((XYItemEntity) entity).getDataset().getYValue(x, y)) { continue; } if (((XYItemEntity) entity).getSeriesIndex() > 3) { continue; } String[] arr = ((XYItemEntity) entity).getShapeCoords().split(","); int xSer = Integer.valueOf(arr[0]); int ySer = Integer.valueOf(arr[1]); int ySerEnd = Integer.valueOf(arr[3]); int patGrNumber = (int) ((XYItemEntity) entity).getDataset().getYValue(x, y); int trend = Integer.valueOf(((XYItemEntity) entity).getDataset() .getSeriesKey(((XYItemEntity) entity).getSeriesIndex()).toString()); ComparisonDetailsBean cpDetails = patientGroupsNumToDsIdMap.get(patGrNumber); List<Integer> dsList = cpDetails.getRegulatedList(trend); StringBuilder sb = new StringBuilder(); for (int dsId : dsList) { QuantDatasetObject ds; sb.append("<h4>").append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getAuthor()) .append(" ") .append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getYear()) .append("<h4/>"); sb.append("<p></p>"); ds = Quant_Central_Manager.getFullQuantDatasetMap().get(dsId); dsKeyDatasetMap.put("_-_" + dsId + "_-_" + comparisonProtein.getProteinAccssionNumber() + "_-_", ds); } String tooltip = sb.toString().substring(0, sb.toString().length() - 7); SquaredDot square = new SquaredDot("squared"); if (paTGrNumbtrendMap.get(patGrNumber)[trend] > 1) { square.setWidth(20 + "px"); square.setHeight(15 + "px"); } else { square.setWidth(10 + "px"); square.setHeight(10 + "px"); } square.setDescription(tooltip); square.setParam("trend", trend); square.setParam("pGrNumber", patGrNumber); int top = (ySer - 4); if (ySer > ySerEnd) { top = ySerEnd - 3; } defaultChartLayout.addComponent(square, "left: " + (xSer - 5) + "px; top: " + top + "px;"); } } }