List of usage examples for org.jfree.chart.renderer.category BoxAndWhiskerRenderer setUseOutlinePaintForWhiskers
public void setUseOutlinePaintForWhiskers(boolean flag)
true, causes the whiskers to be drawn using the series outline paint, and sends a RendererChangeEvent to all registered listeners. From source file:net.sf.maltcms.chromaui.normalization.spi.charts.PeakGroupBoxPlot.java
public List<JFreeChart> createChart() { List<JFreeChart> charts = new ArrayList<>(); LinkedHashSet<ITreatmentGroupDescriptor> treatmentGroups = new LinkedHashSet<>( project.getTreatmentGroups()); List<CategoryPlot> plots = new LinkedList<>(); for (IPeakGroupDescriptor pgd : pgdl) { LinkedHashMap<ITreatmentGroupDescriptor, HashSet<IPeakAnnotationDescriptor>> map = new LinkedHashMap<>(); for (ITreatmentGroupDescriptor itgd : treatmentGroups) { map.put(itgd, new LinkedHashSet<IPeakAnnotationDescriptor>()); }//from w w w . j ava 2s .co m List<IPeakAnnotationDescriptor> descriptors = pgd.getPeakAnnotationDescriptors(); DefaultBoxAndWhiskerCategoryDataset baw = new DefaultBoxAndWhiskerCategoryDataset(); for (IPeakAnnotationDescriptor ipad : descriptors) { ITreatmentGroupDescriptor treatmentGroup = ipad.getChromatogramDescriptor().getTreatmentGroup(); HashSet<IPeakAnnotationDescriptor> descr = map.get(treatmentGroup); if (descr == null) { descr = new HashSet<>(); map.put(treatmentGroup, descr); } descr.add(ipad); } List<Color> colors = new LinkedList<>(); for (ITreatmentGroupDescriptor tgd : map.keySet()) { String name = getPeakName(pgd); baw.add(createBoxAndWhiskerItem(map.get(tgd)), tgd.getName() + " (" + map.get(tgd).size() + ")", name); colors.add(tgd.getColor()); } BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); renderer.setFillBox(true); renderer.setMeanVisible(false); renderer.setMedianVisible(true); renderer.setArtifactPaint(new Color(0, 0, 0, 128)); renderer.setMaximumBarWidth(0.1); renderer.setUseOutlinePaintForWhiskers(false); // renderer.setAutoPopulateSeriesFillPaint(true); // renderer.setAutoPopulateSeriesPaint(true); // renderer.setAutoPopulateSeriesOutlinePaint(true); CategoryPlot cp = new CategoryPlot(baw, new CategoryAxis("Treatment Groups"), new NumberAxis("Normalized Peak Area"), renderer); Logger.getLogger(getClass().getName()).log(Level.INFO, "Setting {0} colors!", colors.size()); ChartCustomizer.setSeriesColors(cp, 0.6f, colors); // ChartCustomizer.setSeriesColors(cp, 0.9f,colors); plots.add(cp); JFreeChart chart = new JFreeChart(cp); chart.setTitle( "Peak group " + pgd.getDisplayName() + " size: " + pgd.getPeakAnnotationDescriptors().size()); charts.add(chart); } // CategoryAxis ca = new CategoryAxis("Treatment Groups"); // NumberAxis va = new NumberAxis("Normalized Peak Area"); // CombinedDomainCategoryPlot cdcp = new CombinedDomainCategoryPlot(ca); // for (CategoryPlot cp : plots) { // cp.setRangeAxis(va); // cdcp.add(cp); // break; // } // return new JFreeChart(cdcp); return charts; }
From source file:net.sf.maltcms.chromaui.normalization.spi.charts.PeakGroupRtBoxPlot.java
public List<JFreeChart> createChart() { List<JFreeChart> charts = new ArrayList<>(); LinkedHashSet<ITreatmentGroupDescriptor> treatmentGroups = new LinkedHashSet<>( project.getTreatmentGroups()); List<CategoryPlot> plots = new LinkedList<>(); for (IPeakGroupDescriptor pgd : pgdl) { LinkedHashMap<ITreatmentGroupDescriptor, HashSet<IPeakAnnotationDescriptor>> map = new LinkedHashMap<>(); for (ITreatmentGroupDescriptor itgd : treatmentGroups) { map.put(itgd, new LinkedHashSet<IPeakAnnotationDescriptor>()); }//from w ww. j a va 2 s . c om List<IPeakAnnotationDescriptor> descriptors = pgd.getPeakAnnotationDescriptors(); DefaultBoxAndWhiskerCategoryDataset baw = new DefaultBoxAndWhiskerCategoryDataset(); for (IPeakAnnotationDescriptor ipad : descriptors) { ITreatmentGroupDescriptor treatmentGroup = ipad.getChromatogramDescriptor().getTreatmentGroup(); HashSet<IPeakAnnotationDescriptor> descr = map.get(treatmentGroup); if (descr == null) { descr = new HashSet<>(); map.put(treatmentGroup, descr); } descr.add(ipad); } List<Color> colors = new LinkedList<>(); for (ITreatmentGroupDescriptor tgd : map.keySet()) { String name = getPeakName(pgd); baw.add(createBoxAndWhiskerItem(map.get(tgd)), tgd.getName() + " (" + map.get(tgd).size() + ")", name); colors.add(tgd.getColor()); } BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); renderer.setFillBox(true); renderer.setMeanVisible(false); renderer.setMedianVisible(true); renderer.setArtifactPaint(new Color(0, 0, 0, 128)); renderer.setMaximumBarWidth(0.1); renderer.setUseOutlinePaintForWhiskers(false); // renderer.setAutoPopulateSeriesFillPaint(true); // renderer.setAutoPopulateSeriesPaint(true); // renderer.setAutoPopulateSeriesOutlinePaint(true); NumberAxis yAxis = new NumberAxis("Peak Apex Retention Time"); yAxis.setAutoRange(true); yAxis.setAutoRangeIncludesZero(false); CategoryPlot cp = new CategoryPlot(baw, new CategoryAxis("Treatment Groups"), yAxis, renderer); Logger.getLogger(getClass().getName()).log(Level.INFO, "Setting {0} colors!", colors.size()); ChartCustomizer.setSeriesColors(cp, 0.6f, colors); // ChartCustomizer.setSeriesColors(cp, 0.9f,colors); plots.add(cp); JFreeChart chart = new JFreeChart(cp); chart.setTitle( "Peak group " + pgd.getDisplayName() + " size: " + pgd.getPeakAnnotationDescriptors().size()); charts.add(chart); } // CategoryAxis ca = new CategoryAxis("Treatment Groups"); // NumberAxis va = new NumberAxis("Normalized Peak Area"); // CombinedDomainCategoryPlot cdcp = new CombinedDomainCategoryPlot(ca); // for (CategoryPlot cp : plots) { // cp.setRangeAxis(va); // cdcp.add(cp); // break; // } // return new JFreeChart(cdcp); return charts; }
From source file:com.diversityarrays.kdxplore.boxplot.BoxPlotPanel.java
private void generateGraph(Why why) { overallMinMax[0] = null;/* www.ja v a 2 s .co m*/ overallMinMax[1] = null; if (chartPanel != null) { for (EventListener cml : chartPanel.getListeners(ChartMouseListener.class)) { chartPanel.removeChartMouseListener((ChartMouseListener) cml); } } Bag<String> missingOrBad = new TreeBag<>(); Bag<String> suppressed = new TreeBag<>(); final BoxAndWhiskerCategoryDataset dataset = createSampleDataSet(missingOrBad, suppressed, overallMinMax); final CategoryAxis xAxis = new CategoryAxis(Msg.AXIS_LABEL_TRAIT_INSTANCE()); final NumberAxis yAxis = new NumberAxis(Msg.AXIS_LABEL_SAMPLE_VALUE()); yAxis.setAutoRangeIncludesZero(false); final BoxAndWhiskerRenderer renderer = new BoxAndWhiskerRenderer(); renderer.setMaximumBarWidth(.35); // renderer.setItemMargin(.1); renderer.setFillBox(true); renderer.setUseOutlinePaintForWhiskers(true); renderer.setOutliersVisible(showOutliers.isSelected()); renderer.setMeanVisible(showMean.isSelected()); renderer.setMedianVisible(showMedian.isSelected()); // renderer.setToolTipGenerator(new BoxAndWhiskerToolTipGenerator()); CategoryPlot boxplot = new CategoryPlot(dataset, xAxis, yAxis, renderer); chart = new JFreeChart(getTitle(), new Font(FONT_NAME_SANS_SERIF, Font.BOLD, 14), boxplot, true); // dataMin = ((CategoryPlot) chart.getPlot()).getRangeAxis().getLowerBound(); // dataMax = ((CategoryPlot) chart.getPlot()).getRangeAxis().getUpperBound(); CategoryItemRenderer catr = ((CategoryPlot) chart.getPlot()).getRendererForDataset(dataset); TraitColorProvider traitColorProvider = colorProviderFactory.get(); for (TraitInstance ti : traitInstances) { ColorPair colorPair = traitColorProvider.getTraitInstanceColor(ti); if (colorPair != null) { String validName = traitNameStyle.makeTraitInstanceName(ti); if (seriesCountByTraitName.get(validName) != null) { catr.setSeriesPaint(seriesCountByTraitName.get(validName), colorPair.getBackground()); } } } // ((CategoryPlot) chart.getPlot()).setRenderer(catr); chartPanel = new KDXploreChartPanel(chart); chartPanel.addChartMouseListener(chartMouseListener); // TODO check if we should be checking syncedOption if (marker != null && syncedOption.getSyncWhat().isSync()) { ((CategoryPlot) getChart().getPlot()).addRangeMarker(marker); // curationControls.setSyncedState(true); } if (why.needsReport()) { String msg = VisToolData.createReportText(missingOrBad, suppressed); if (!Check.isEmpty(msg)) { if (why.needsLeadingNewline()) { reportTextArea.append("\n"); } reportTextArea.append("==== "); reportTextArea.append(why.displayValue); reportTextArea.append("\n"); reportTextArea.append(msg); } } splitPane.setRightComponent(chartPanel); this.updateUI(); this.repaint(); }
From source file:sim.util.media.chart.BoxPlotGenerator.java
protected void buildGlobalAttributes(LabelledList list) { // create the chart ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(false); ((CategoryPlot) (chart.getPlot())).setRangeGridlinePaint(new Color(200, 200, 200)); xLabel = new PropertyField() { public String newValue(String newValue) { setXAxisLabel(newValue);// www. ja v a2s . c o m getChartPanel().repaint(); return newValue; } }; xLabel.setValue(getXAxisLabel()); list.add(new JLabel("X Label"), xLabel); yLabel = new PropertyField() { public String newValue(String newValue) { setYAxisLabel(newValue); getChartPanel().repaint(); return newValue; } }; yLabel.setValue(getYAxisLabel()); list.add(new JLabel("Y Label"), yLabel); yLog = new JCheckBox(); yLog.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { if (yLog.isSelected()) { LogarithmicAxis logAxis = new LogarithmicAxis(yLabel.getValue()); logAxis.setStrictValuesFlag(false); ((CategoryPlot) (chart.getPlot())).setRangeAxis(logAxis); } else ((CategoryPlot) (chart.getPlot())).setRangeAxis(new NumberAxis(yLabel.getValue())); } }); list.add(new JLabel("Y Log Axis"), yLog); final JCheckBox ygridlines = new JCheckBox(); ygridlines.setSelected(false); ItemListener il = new ItemListener() { public void itemStateChanged(ItemEvent e) { if (e.getStateChange() == ItemEvent.SELECTED) { ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(true); } else { ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(false); } } }; ygridlines.addItemListener(il); // JFreeChart's Box Plots look awful when wide because the mean // circle is based on the width of the bar to the exclusion of all // else. So I've restricted the width to be no more than 0.4, and 0.1 // is the suggested default. final double INITIAL_WIDTH = 0.1; final double MAXIMUM_RATIONAL_WIDTH = 0.4; maximumWidthField = new NumberTextField(INITIAL_WIDTH, 2.0, 0) { public double newValue(double newValue) { if (newValue <= 0.0 || newValue > MAXIMUM_RATIONAL_WIDTH) newValue = currentValue; ((BoxAndWhiskerRenderer) (((CategoryPlot) (chart.getPlot())).getRenderer())) .setMaximumBarWidth(newValue); //update(); return newValue; } }; list.addLabelled("Max Width", maximumWidthField); Box box = Box.createHorizontalBox(); box.add(new JLabel(" Y")); box.add(ygridlines); box.add(Box.createGlue()); list.add(new JLabel("Y Grid Lines"), ygridlines); mean = new JCheckBox(); mean.setSelected(true); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setMeanVisible(mean.isSelected()); } }; mean.addItemListener(il); median = new JCheckBox(); median.setSelected(true); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setMedianVisible(median.isSelected()); } }; median.addItemListener(il); list.add(new JLabel("Mean"), mean); list.add(new JLabel("Median"), median); final JCheckBox horizontal = new JCheckBox(); horizontal.setSelected(false); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { CategoryPlot plot = (CategoryPlot) (chart.getPlot()); if (e.getStateChange() == ItemEvent.SELECTED) { plot.setOrientation(PlotOrientation.HORIZONTAL); } else { plot.setOrientation(PlotOrientation.VERTICAL); } //updateGridLines(); } }; horizontal.addItemListener(il); list.add(new JLabel("Horizontal"), horizontal); final JCheckBox whiskersUseFillColorButton = new JCheckBox(); whiskersUseFillColorButton.setSelected(false); whiskersUseFillColorButton.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setUseOutlinePaintForWhiskers(!whiskersUseFillColorButton.isSelected()); } }); box = Box.createHorizontalBox(); box.add(new JLabel(" Colored")); box.add(whiskersUseFillColorButton); box.add(Box.createGlue()); list.add(new JLabel("Whiskers"), box); }
From source file:edu.gmu.cs.sim.util.media.chart.BoxPlotGenerator.java
protected void buildGlobalAttributes(LabelledList list) { // create the chart ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(false); ((CategoryPlot) (chart.getPlot())).setRangeGridlinePaint(new Color(200, 200, 200)); xLabel = new PropertyField() { public String newValue(String newValue) { setXAxisLabel(newValue);/*from w w w . j av a2 s . com*/ getChartPanel().repaint(); return newValue; } }; xLabel.setValue(getXAxisLabel()); list.add(new JLabel("X Label"), xLabel); yLabel = new PropertyField() { public String newValue(String newValue) { setYAxisLabel(newValue); getChartPanel().repaint(); return newValue; } }; yLabel.setValue(getYAxisLabel()); list.add(new JLabel("Y Label"), yLabel); yLog = new JCheckBox(); yLog.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { if (yLog.isSelected()) { LogarithmicAxis logAxis = new LogarithmicAxis(yLabel.getValue()); logAxis.setStrictValuesFlag(false); ((CategoryPlot) (chart.getPlot())).setRangeAxis(logAxis); } else { ((CategoryPlot) (chart.getPlot())).setRangeAxis(new NumberAxis(yLabel.getValue())); } } }); list.add(new JLabel("Y Log Axis"), yLog); final JCheckBox ygridlines = new JCheckBox(); ygridlines.setSelected(false); ItemListener il = new ItemListener() { public void itemStateChanged(ItemEvent e) { if (e.getStateChange() == ItemEvent.SELECTED) { ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(true); } else { ((CategoryPlot) (chart.getPlot())).setRangeGridlinesVisible(false); } } }; ygridlines.addItemListener(il); // JFreeChart's Box Plots look awful when wide because the mean // circle is based on the width of the bar to the exclusion of all // else. So I've restricted the width to be no more than 0.4, and 0.1 // is the suggested default. final double INITIAL_WIDTH = 0.1; final double MAXIMUM_RATIONAL_WIDTH = 0.4; maximumWidthField = new NumberTextField(INITIAL_WIDTH, 2.0, 0) { public double newValue(double newValue) { if (newValue <= 0.0 || newValue > MAXIMUM_RATIONAL_WIDTH) { newValue = currentValue; } ((BoxAndWhiskerRenderer) (((CategoryPlot) (chart.getPlot())).getRenderer())) .setMaximumBarWidth(newValue); //update(); return newValue; } }; list.addLabelled("Max Width", maximumWidthField); Box box = Box.createHorizontalBox(); box.add(new JLabel(" Y")); box.add(ygridlines); box.add(Box.createGlue()); list.add(new JLabel("Y Grid Lines"), ygridlines); mean = new JCheckBox(); mean.setSelected(true); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setMeanVisible(mean.isSelected()); } }; mean.addItemListener(il); median = new JCheckBox(); median.setSelected(true); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setMedianVisible(median.isSelected()); } }; median.addItemListener(il); list.add(new JLabel("Mean"), mean); list.add(new JLabel("Median"), median); final JCheckBox horizontal = new JCheckBox(); horizontal.setSelected(false); il = new ItemListener() { public void itemStateChanged(ItemEvent e) { CategoryPlot plot = (CategoryPlot) (chart.getPlot()); if (e.getStateChange() == ItemEvent.SELECTED) { plot.setOrientation(PlotOrientation.HORIZONTAL); } else { plot.setOrientation(PlotOrientation.VERTICAL); } //updateGridLines(); } }; horizontal.addItemListener(il); list.add(new JLabel("Horizontal"), horizontal); final JCheckBox whiskersUseFillColorButton = new JCheckBox(); whiskersUseFillColorButton.setSelected(false); whiskersUseFillColorButton.addChangeListener(new ChangeListener() { public void stateChanged(ChangeEvent e) { BoxAndWhiskerRenderer renderer = ((BoxAndWhiskerRenderer) ((CategoryPlot) (chart.getPlot())) .getRenderer()); renderer.setUseOutlinePaintForWhiskers(!whiskersUseFillColorButton.isSelected()); } }); box = Box.createHorizontalBox(); box.add(new JLabel(" Colored")); box.add(whiskersUseFillColorButton); box.add(Box.createGlue()); list.add(new JLabel("Whiskers"), box); }