List of usage examples for org.jfree.chart.renderer PaintScale getLowerBound
public double getLowerBound();
From source file:ch.zhaw.ias.dito.ui.util.BlockPlotPanel.java
public BlockPlotPanel(Matrix m, double lowerBound, double upperBound) { super(new BorderLayout()); NumberAxis xAxis = new NumberAxis(); xAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); xAxis.setLowerMargin(1.0);/*from w w w . j av a 2s . c om*/ xAxis.setUpperMargin(0.0); NumberAxis yAxis = new NumberAxis(); yAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); yAxis.setLowerMargin(1.0); yAxis.setUpperMargin(0.0); XYBlockRenderer renderer = new XYBlockRenderer(); renderer.setBaseToolTipGenerator(new XYToolTipGenerator() { @Override public String generateToolTip(XYDataset dataset, int series, int item) { XYZDataset xyzDataset = (XYZDataset) dataset; double x = xyzDataset.getXValue(series, item); double y = xyzDataset.getYValue(series, item); double z = xyzDataset.getZValue(series, item); return ("X=" + x + ", Y=" + y + ", Z=" + z); } }); PaintScale scale = new ColorPaintScale(lowerBound, upperBound); renderer.setPaintScale(scale); ValueAxis axis = new NumberAxis(); axis.setLowerBound(scale.getLowerBound()); axis.setUpperBound(scale.getUpperBound()); PaintScaleLegend legend = new PaintScaleLegend(scale, axis); legend.setMargin(new RectangleInsets(10, 10, 10, 10)); legend.setPosition(RectangleEdge.RIGHT); MatrixXYDataset dataset = new MatrixXYDataset(m); plot = new XYPlot(dataset, xAxis, yAxis, renderer); chart = new JFreeChart(plot); chart.removeLegend(); chart.addSubtitle(legend); chart.setBackgroundPaint(Color.white); ChartPanel chartPanel = new ChartPanel(chart); chartPanel.setDisplayToolTips(true); this.add(chartPanel, BorderLayout.CENTER); }
From source file:net.sf.maltcms.chromaui.chromatogram1Dviewer.ui.Chromatogram1DHeatmapViewTopComponent.java
private Chromatogram1DHeatmapViewerPanel createPanel(ADataset2D<IChromatogram1D, IScan> ds) { XYPlot p = createPlot(ds);/* ww w .jav a 2 s . c o m*/ final PaintScale ps = ((XYBlockRenderer) p.getRenderer()).getPaintScale(); p.setDomainGridlinesVisible(false); p.setRangeGridlinesVisible(false); JFreeChart jfc = new JFreeChart(p); final ChartPanel cp = new ChartPanel(jfc, true); cp.setZoomFillPaint(new Color(192, 192, 192, 96)); cp.setZoomOutlinePaint(new Color(220, 220, 220, 192)); cp.setFillZoomRectangle(false); cp.getChart().getLegend().setVisible(true); Chromatogram1DHeatmapViewerPanel panel = new Chromatogram1DHeatmapViewerPanel(content, getLookup(), ds); if (panel.getBackgroundColor() == null) { panel.setBackgroundColor((Color) ps.getPaint(ps.getLowerBound())); } cp.addKeyListener(panel); cp.setFocusable(true); cp.setDisplayToolTips(true); cp.setDismissDelay(3000); cp.setInitialDelay(0); cp.setReshowDelay(0); cp.setVisible(true); cp.setRefreshBuffer(true); cp.setMouseWheelEnabled(true); //FIXME fix peak overlay // if (project != null) { // for (Peak1DContainer peaks : project.getPeaks(chromatogram)) { // Peak1DHeatmapOverlay overlay = new Peak1DHeatmapOverlay(chromatogram, peaks.getName(), peaks.getDisplayName(), peaks.getShortDescription(), true, peaks); // cp.addOverlay(overlay); // content.add(overlay); // } // } panel.setChartPanel(cp); if (ps != null) { panel.setPaintScale(ps); } panel.setPlot(p); return panel; }
From source file:net.sf.maltcms.chromaui.chromatogram2Dviewer.ui.Chromatogram2DViewTopComponent.java
private Chromatogram2DViewerPanel createPanel(IChromatogramDescriptor chromatogram, ADataset2D<IChromatogram2D, IScan2D> ds, List<ChartOverlay> overlays) { IPaintScaleProvider ips = Lookup.getDefault().lookup(IPaintScaleProvider.class); ips.setMin(ds.getMinZ());// w w w . j a va 2s.c o m ips.setMax(ds.getMaxZ()); PaintScale ps = ips.getPaintScales().get(0); XYPlot p = createPlot(chromatogram, ds, ps); p.setDomainGridlinesVisible(false); p.setRangeGridlinesVisible(false); JFreeChart jfc = new JFreeChart(p); final ContextAwareChartPanel cp = new ContextAwareChartPanel(jfc, true); cp.setZoomFillPaint(new Color(192, 192, 192, 96)); cp.setZoomOutlinePaint(new Color(220, 220, 220, 192)); cp.setFillZoomRectangle(false); cp.getChart().getLegend().setVisible(true); Chromatogram2DViewerPanel panel = new Chromatogram2DViewerPanel(content, getLookup(), ds, ps); if (panel.getBackgroundColor() == null) { panel.setBackgroundColor((Color) ps.getPaint(ps.getLowerBound())); } cp.addKeyListener(panel); cp.setFocusable(true); cp.setDisplayToolTips(true); cp.setDismissDelay(3000); cp.setInitialDelay(0); cp.setReshowDelay(0); cp.setVisible(true); cp.setRefreshBuffer(true); cp.setMouseWheelEnabled(true); if (project != null) { for (Peak1DContainer peaks : project.getPeaks(chromatogram)) { Peak2DOverlay overlay = new Peak2DOverlay(chromatogram, peaks.getName(), peaks.getDisplayName(), peaks.getShortDescription(), true, peaks); cp.addOverlay(overlay); content.add(overlay); overlays.add(overlay); } } panel.setChartPanel(cp); panel.setPlot(p); return panel; }
From source file:net.sf.maltcms.chromaui.charts.FastHeatMapPlot.java
/** * * @param xyz/*from www . j av a 2 s. c o m*/ * @param sl * @param spm * @param xybr * @param activeGraphics * @param dataArea * @param info * @param crosshairState * @return */ public BufferedImage prepareData(final XYZDataset xyz, final int sl, final int spm, final XYBlockRenderer xybr, Graphics2D activeGraphics, Rectangle2D dataArea, PlotRenderingInfo info, CrosshairState crosshairState) { long start = System.currentTimeMillis(); final PaintScale ps = xybr.getPaintScale(); double minz = Double.POSITIVE_INFINITY, maxz = Double.NEGATIVE_INFINITY; for (int i = 0; i < xyz.getSeriesCount(); i++) { final int items = xyz.getItemCount(i); for (int j = 0; j < items; j++) { minz = Math.min(xyz.getZValue(i, j), minz); maxz = Math.max(xyz.getZValue(i, j), maxz); } } if (ps instanceof GradientPaintScale) { ((GradientPaintScale) ps).setUpperBound(maxz); ((GradientPaintScale) ps).setLowerBound(minz); } Logger.getLogger(getClass().getName()).log(Level.INFO, "Finding min and max data took{0}ms", (System.currentTimeMillis() - start)); // VolatileImage bi = null; // if (bi == null) { // if (this.getOrientation() == PlotOrientation.VERTICAL) { BufferedImage bi = createCompatibleImage(sl, spm, BufferedImage.TRANSLUCENT); // } else { // bi = createCompatibleImage(spm, sl); // } // }else{ // img.validate(g.getDeviceConfiguration()) // } Graphics2D g2 = (Graphics2D) bi.getGraphics(); g2.setColor((Color) ps.getPaint(ps.getLowerBound())); g2.fillRect(0, 0, sl, spm); // System.out.println("Using Threshold: " + threshold); int height = bi.getHeight(); //final WritableRaster wr = bi.getRaster(); XYItemRendererState xyrs = xybr.initialise(g2, dataArea, this, xyz, info); for (int i = 0; i < xyz.getSeriesCount(); i++) { final int items = xyz.getItemCount(i); for (int j = 0; j < items; j++) { final double tmp = xyz.getZValue(i, j); if (tmp > this.threshholdCutOff) { //if(j%50==0)System.out.println("Value > threshold: "+tmp); final Paint p = ps.getPaint(tmp); // final Paint tp = ps.getPaint(this.threshholdCutOff); // if (!tp.equals(p)) { if (p instanceof Color) { final Color c = (Color) p; g2.setColor(c); // xybr.drawItem(g2, xyrs, dataArea, info, this, domainAxis, rangeAxis, xyz, i, j, crosshairState, 0); // if (this.getOrientation() == PlotOrientation.VERTICAL) { g2.fillRect((int) xyz.getXValue(i, j), height - (int) xyz.getYValue(i, j), 1, 1); // wr.setPixel(, , new int[]{c.getRed(), // c.getGreen(), c.getBlue(), c.getAlpha()}); // } else { // wr.setPixel((int) xyz.getYValue(i, j), (int) xyz.getXValue(i, j), new int[]{c.getRed(), // c.getGreen(), c.getBlue(), c.getAlpha()}); // } // } // } } } } } Logger.getLogger(getClass().getName()).log(Level.INFO, "Creating image and drawing items took {0}ms", (System.currentTimeMillis() - start)); return bi; }