Example usage for org.jfree.chart.renderer.xy XYItemRenderer setSeriesVisible

Introduction

In this page you can find the example usage for org.jfree.chart.renderer.xy XYItemRenderer setSeriesVisible.

Prototype

public void setSeriesVisible(int series, Boolean visible, boolean notify);

Source Link

Document

Sets the flag that controls whether a series is visible and, if requested, sends a RendererChangeEvent to all registered listeners.

Usage

From source file:sanger.team16.gui.genevar.eqtl.gene.RegionalPlot.java

private JFreeChart createChart(String geneChromosome, int geneStart, int distanceToTSS, double threshold,
        XYDataset dataset) {/*from   www.j av  a  2  s .  c o  m*/
    JFreeChart chart = ChartFactory.createScatterPlot(null,
            "Position on chromosome " + geneChromosome + " (bp)", "-log10(P)", dataset,
            PlotOrientation.VERTICAL, true, true, false);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.WHITE);
    plot.setDomainGridlinePaint(Color.lightGray);
    //plot.setRangeGridlinePaint(Color.lightGray);
    //plot.setRangeCrosshairVisible(true);

    //NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    //domainAxis.setRange(geneStart - distance, geneStart + distance);       
    //domainAxis.setUpperMargin(1000);
    //domainAxis.setLowerMargin(1000);

    //ValueAxis rangeAxis = plot.getRangeAxis();
    //rangeAxis.setUpperMargin(dataset.getYValue(0, 0)/5);
    //rangeAxis.setLowerBound(0);

    XYItemRenderer renderer = plot.getRenderer();
    int size = dataset.getSeriesCount();
    for (int i = 0; i < size; i++) {
        //int scale = (int) Math.round((255 - (255 * dataset.getYValue(i, 0)) / top) / 1.4);
        //renderer.setSeriesPaint(i, new Color(255, scale, scale));

        renderer.setSeriesPaint(i, new Color(255, 0, 0));
        renderer.setSeriesShape(i, ShapeUtilities.createDiamond((float) 3));
        renderer.setBaseSeriesVisibleInLegend(false);
    }

    ValueMarker upperMarker = new ValueMarker(-Math.log10(threshold));
    upperMarker.setPaint(Color.gray);
    //upperMarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);        
    //upperMarker.setLabel("-log10(10E-4)");
    //upperMarker.setLabelPaint(Color.red);
    //upperMarker.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    //upperMarker.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    float[] f = { 4, 3, 4, 3 };
    upperMarker.setStroke(new BasicStroke(1.0f, 1, 1, 0, f, 1.0f));
    plot.addRangeMarker(upperMarker);

    ValueMarker marker = new ValueMarker(0.0);
    marker.setPaint(Color.lightGray);
    plot.addRangeMarker(marker);

    XYSeries series = new XYSeries("Range");
    series.add(geneStart - distanceToTSS, -0.05);
    series.add(geneStart + distanceToTSS, -0.05);
    ((XYSeriesCollection) dataset).addSeries(series);
    renderer.setSeriesVisible(dataset.getSeriesCount() - 1, false, false);

    return chart;
}

---

From source file:sanger.team16.gui.genevar.mqtl.gene.RegionalPlot.java

private JFreeChart createChart(String geneChromosome, int geneStart, int distanceToTSS, double threshold,
        XYDataset dataset) {//  w  w w  .j  av  a  2s. c  om
    JFreeChart chart = ChartFactory.createScatterPlot(null,
            "Position on chromosome " + geneChromosome + " (bp)", "-log10(P)", dataset,
            PlotOrientation.VERTICAL, true, true, false);

    XYPlot plot = (XYPlot) chart.getPlot();
    plot.setBackgroundPaint(Color.WHITE);
    plot.setDomainGridlinePaint(Color.lightGray);
    //plot.setRangeGridlinePaint(Color.lightGray);
    //plot.setRangeCrosshairVisible(true);

    //NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    //domainAxis.setRange(geneStart - distance, geneStart + distance);       
    //domainAxis.setUpperMargin(1000);
    //domainAxis.setLowerMargin(1000);

    //ValueAxis rangeAxis = plot.getRangeAxis();
    //rangeAxis.setUpperMargin(dataset.getYValue(0, 0)/5);
    //rangeAxis.setLowerBound(0);

    XYItemRenderer renderer = plot.getRenderer();
    int size = dataset.getSeriesCount();
    for (int i = 0; i < size; i++) {
        //int scale = (int) Math.round((255 - (255 * dataset.getYValue(i, 0)) / top) / 1.4);
        //renderer.setSeriesPaint(i, new Color(255, scale, scale));

        renderer.setSeriesPaint(i, new Color(50, 205, 50));
        renderer.setSeriesShape(i, ShapeUtilities.createDiamond((float) 3));
        renderer.setBaseSeriesVisibleInLegend(false);
    }

    ValueMarker upperMarker = new ValueMarker(-Math.log10(threshold));
    upperMarker.setPaint(Color.gray);
    //upperMarker.setLabelOffsetType(LengthAdjustmentType.EXPAND);        
    //upperMarker.setLabel("-log10(10E-4)");
    //upperMarker.setLabelPaint(Color.red);
    //upperMarker.setLabelAnchor(RectangleAnchor.TOP_RIGHT);
    //upperMarker.setLabelTextAnchor(TextAnchor.BOTTOM_RIGHT);
    float[] f = { 4, 3, 4, 3 };
    upperMarker.setStroke(new BasicStroke(1.0f, 1, 1, 0, f, 1.0f));
    plot.addRangeMarker(upperMarker);

    ValueMarker marker = new ValueMarker(0.0);
    marker.setPaint(Color.lightGray);
    plot.addRangeMarker(marker);

    XYSeries series = new XYSeries("Range");
    series.add(geneStart - distanceToTSS, -0.05);
    series.add(geneStart + distanceToTSS, -0.05);
    ((XYSeriesCollection) dataset).addSeries(series);
    renderer.setSeriesVisible(dataset.getSeriesCount() - 1, false, false);

    return chart;
}

---