List of usage examples for org.jfree.chart.renderer.xy XYLineAndShapeRenderer setSeriesPaint
public void setSeriesPaint(int series, Paint paint)
From source file:de.dmarcini.submatix.pclogger.gui.spx42LogGraphPanel.java
/** * Erzeuge je einen Graphen fr die Sensoren Project: SubmatixBTForPC Package: de.dmarcini.submatix.pclogger.gui * //from ww w .j a va 2 s . com * @author Dirk Marciniak (dirk_marciniak@arcor.de) Stand: 02.08.2012 * @param diveList * @param thePlot * @param sensor */ private void makePpoGraph(Vector<Integer[]> diveList, XYPlot thePlot, int sensor) { XYDataset ppo2DataSet; int indexForCreate; int posForGraph; int posColor; String title; // lg.debug("create Sensor <" + sensor + "> dataset"); // Titel schon mal... title = String.format(LangStrings.getString("spx42LogGraphPanel.graph.ppo2SensorScalaTitle"), sensor); // // Dataset Index einstellen switch (sensor) { case 0: indexForCreate = LogDerbyDatabaseUtil.PPO2; posForGraph = GRAPH_PPO2ALL; posColor = ProjectConst.GRAPH_PPO2ALL_RCOLOR; title = LangStrings.getString("spx42LogGraphPanel.graph.ppo2ScalaTitle"); break; case 1: indexForCreate = LogDerbyDatabaseUtil.PPO2_01; posForGraph = GRAPH_PPO2_01; posColor = ProjectConst.GRAPH_PPO2_01_RCOLOR; break; case 2: indexForCreate = LogDerbyDatabaseUtil.PPO2_02; posForGraph = GRAPH_PPO2_02; posColor = ProjectConst.GRAPH_PPO2_02_RCOLOR; break; case 3: indexForCreate = LogDerbyDatabaseUtil.PPO2_03; posForGraph = GRAPH_PPO2_03; posColor = ProjectConst.GRAPH_PPO2_02_RCOLOR; break; default: indexForCreate = LogDerbyDatabaseUtil.PPO2_01; posForGraph = GRAPH_PPO2_01; posColor = ProjectConst.GRAPH_PPO2_01_RCOLOR; } if (showingUnitSystem == savedUnitSystem || showingUnitSystem == ProjectConst.UNITS_DEFAULT) { ppo2DataSet = createXYDataset(title, diveList, ProjectConst.UNITS_DEFAULT, 0, indexForCreate); } else { ppo2DataSet = createXYDataset(title, diveList, showingUnitSystem, 0, indexForCreate); } final XYLineAndShapeRenderer ppo2Renderer = new XYLineAndShapeRenderer(true, true); // die Achse sollte schon erstellt sein thePlot.setDataset(posForGraph, ppo2DataSet); thePlot.mapDatasetToRangeAxis(posForGraph, GRAPH_PPO2ALL); ppo2Renderer.setSeriesPaint(0, new Color(posColor)); ppo2Renderer.setSeriesShapesVisible(0, false); ppo2Renderer.setDrawSeriesLineAsPath(true); thePlot.setRenderer(posForGraph, ppo2Renderer); }
From source file:de.dmarcini.submatix.pclogger.gui.spx42LogGraphPanel.java
/** * Erzeuge eine Grafik fr die Nullzeitanzeige Project: SubmatixBTForPC Package: de.dmarcini.submatix.pclogger.gui * /*from w w w . j a va 2 s. c om*/ * @author Dirk Marciniak (dirk_marciniak@arcor.de) Stand: 02.08.2012 * @param diveList * @param thePlot */ private void makeNulltimeGraph(Vector<Integer[]> diveList, XYPlot thePlot) { XYDataset nullTimeDataSet; // lg.debug("create nulltime dataset"); nullTimeDataSet = createXYDataset(LangStrings.getString("spx42LogGraphPanel.graph.nulltimeScalaTitle"), diveList, ProjectConst.UNITS_DEFAULT, 0, LogDerbyDatabaseUtil.NULLTIME); final XYLineAndShapeRenderer lineNullTimeRenderer = new XYLineAndShapeRenderer(true, true); final LogarithmicAxis nullTimeAxis = new LogarithmicAxis( LangStrings.getString("spx42LogGraphPanel.graph.nulltimeAxisTitle")); nullTimeAxis.setNumberFormatOverride(new DecimalFormat("#.###")); lineNullTimeRenderer.setSeriesPaint(0, new Color(ProjectConst.GRAPH_NULLTIME_ACOLOR)); lineNullTimeRenderer.setSeriesShapesVisible(0, false); lineNullTimeRenderer.setDrawSeriesLineAsPath(true); nullTimeAxis.setAutoRange(false); nullTimeAxis.setRange(0.0D, 200.0D); // Lege die Nullzeit Axenreichweite auf ein bersichtliches Ma fest // nullTimeAxis.setAutoRangeIncludesZero( true ); thePlot.setRangeAxis(GRAPH_NULLTIME, nullTimeAxis); thePlot.mapDatasetToRangeAxis(GRAPH_NULLTIME, GRAPH_NULLTIME); thePlot.setDataset(GRAPH_NULLTIME, nullTimeDataSet); thePlot.setRenderer(GRAPH_NULLTIME, lineNullTimeRenderer); }
From source file:de.dmarcini.submatix.pclogger.gui.spx42LogGraphPanel.java
/** * Temperaturgraph machen Project: SubmatixBTForPC Package: de.dmarcini.submatix.pclogger.gui * /* w w w . j a v a2s. co m*/ * @author Dirk Marciniak (dirk_marciniak@arcor.de) Stand: 02.08.2012 * @param labels * @param thePlot * @param diveList */ private void makeTemperatureGraph(Vector<Integer[]> diveList, XYPlot thePlot, String[] labels) { XYDataset tempDataSet; Color axisColor = new Color(ProjectConst.GRAPH_TEMPERATURE_ACOLOR); Color renderColor = new Color(ProjectConst.GRAPH_TEMPERATURE_RCOLOR); // lg.debug("create temp dataset"); if (showingUnitSystem == savedUnitSystem || showingUnitSystem == ProjectConst.UNITS_DEFAULT) { // Keine nderung norwendig! tempDataSet = createXYDataset(LangStrings.getString("spx42LogGraphPanel.graph.tempScalaTitle"), diveList, ProjectConst.UNITS_DEFAULT, 0, LogDerbyDatabaseUtil.TEMPERATURE); } else { // bitte konvertiere die Einheiten ins gewnschte Format! tempDataSet = createXYDataset(LangStrings.getString("spx42LogGraphPanel.graph.tempScalaTitle"), diveList, showingUnitSystem, 0, LogDerbyDatabaseUtil.TEMPERATURE); } final XYLineAndShapeRenderer lineTemperatureRenderer = new XYLineAndShapeRenderer(true, true); final NumberAxis tempAxis = new NumberAxis( LangStrings.getString("spx42LogGraphPanel.graph.tempAxisTitle") + " " + labels[1]); tempAxis.setLabelPaint(axisColor); tempAxis.setTickLabelPaint(axisColor); tempAxis.setNumberFormatOverride(new DecimalFormat("###.##")); lineTemperatureRenderer.setSeriesPaint(0, renderColor); lineTemperatureRenderer.setSeriesShapesVisible(0, false); lineTemperatureRenderer.setDrawSeriesLineAsPath(true); tempAxis.setAutoRangeIncludesZero(true); thePlot.setRangeAxis(GRAPH_DEPTH, tempAxis); thePlot.mapDatasetToRangeAxis(GRAPH_DEPTH, 0); thePlot.setDataset(GRAPH_TEMPERATURE, tempDataSet); thePlot.setRenderer(GRAPH_TEMPERATURE, lineTemperatureRenderer); }
From source file:com.rapidminer.gui.plotter.charts.ScatterPlotter2.java
@Override public AbstractXYItemRenderer getItemRenderer(boolean nominal, int size, final double minColor, final double maxColor) { if (nominal) { // renderer settings XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(false, true) { private static final long serialVersionUID = 8435520335829606084L; // public boolean getItemVisible(int series, int item) { // String id = getId(series, item); // return (id != null && dataTable.isDeselected(id)); // }/* ww w.j a va2 s . co m*/ @Override public Paint getItemPaint(int series, int item) { String id = getId(series, item); if (id != null && dataTable.isDeselected(id)) { return DESELECTED_COLOR; } else { return super.getItemPaint(series, item); } } @Override public Paint getItemOutlinePaint(int series, int item) { String id = getId(series, item); if (id != null && dataTable.isDeselected(id)) { return DESELECTED_COLOR; } else { return super.getItemOutlinePaint(series, item); } } }; renderer.setBaseOutlinePaint(Color.BLACK); renderer.setUseOutlinePaint(true); renderer.setDrawOutlines(true); if (size > 1) { for (int i = 0; i < size; i++) { renderer.setSeriesPaint(i, getColorProvider().getPointColor(i / (double) (size - 1))); renderer.setSeriesShape(i, new Ellipse2D.Double(-3, -3, POINT_SIZE, POINT_SIZE)); } } else { renderer.setSeriesPaint(0, getColorProvider().getPointColor(1.0d)); renderer.setSeriesShape(0, new Ellipse2D.Double(-3, -3, POINT_SIZE, POINT_SIZE)); } return renderer; } else { XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(false, true) { private static final long serialVersionUID = 7869118044747608622L; private ColorProvider colorProvider = new ColorProvider(); // public boolean getItemVisible(int series, int item) { // String id = getId(series, item); // return (id != null && dataTable.isDeselected(id)); // } @Override public Paint getItemPaint(int series, int item) { String id = getId(series, item); if (id != null && dataTable.isDeselected(id)) { return DESELECTED_COLOR; } else { double colorValue = ((XYZDataset) getPlot().getDataset()).getZValue(series, item); double normalized = (colorValue - minColor) / (maxColor - minColor); return colorProvider.getPointColor(normalized); } } @Override public Paint getItemOutlinePaint(int series, int item) { String id = getId(series, item); if (id != null && dataTable.isDeselected(id)) { return DESELECTED_COLOR; } else { return super.getItemOutlinePaint(series, item); } } }; renderer.setBaseOutlinePaint(Color.BLACK); renderer.setUseOutlinePaint(true); renderer.setDrawOutlines(true); renderer.setSeriesShape(0, new Ellipse2D.Double(-3, -3, POINT_SIZE, POINT_SIZE)); return renderer; } }
From source file:com.rapidminer.gui.new_plotter.engine.jfreechart.ChartRendererFactory.java
private static void configureXYLineAndShapeRenderer(XYLineAndShapeRenderer renderer, ValueSource valueSource, PlotInstance plotInstance) {/*w w w . j a v a 2 s . c o m*/ renderer.setBaseToolTipGenerator(new StandardXYToolTipGenerator()); SeriesFormat seriesFormat = valueSource.getSeriesFormat(); DimensionConfig domainConfig = valueSource.getDomainConfig(); DimensionConfig colorDimensionConfig = plotInstance.getCurrentPlotConfigurationClone() .getDimensionConfig(PlotDimension.COLOR); DimensionConfig shapeDimensionConfig = plotInstance.getCurrentPlotConfigurationClone() .getDimensionConfig(PlotDimension.SHAPE); ValueSourceData valueSourceData = plotInstance.getPlotData().getValueSourceData(valueSource); int seriesCount = valueSourceData.getSeriesDataForAllGroupCells().groupCellCount(); // Loop all series and set series format. // Format based on dimension configs will be set later on in initFormatDelegate(). for (int seriesIdx = 0; seriesIdx < seriesCount; ++seriesIdx) { // configure linestyle if (seriesFormat.getLineStyle() == LineStyle.NONE) { renderer.setSeriesLinesVisible(seriesIdx, false); } else { renderer.setSeriesLinesVisible(seriesIdx, true); renderer.setSeriesStroke(seriesIdx, seriesFormat.getStroke(), false); } // configure series shape if necessary if (!SeriesFormat.calculateIndividualFormatForEachItem(domainConfig, shapeDimensionConfig)) { if (seriesFormat.getItemShape() != ItemShape.NONE) { renderer.setSeriesShapesVisible(seriesIdx, true); renderer.setSeriesShape(seriesIdx, seriesFormat.getItemShape().getShape()); } else { renderer.setSeriesShapesVisible(seriesIdx, false); } } // configure series color if necessary if (!SeriesFormat.calculateIndividualFormatForEachItem(domainConfig, colorDimensionConfig)) { Color itemColor = seriesFormat.getItemColor(); renderer.setSeriesPaint(seriesIdx, itemColor); renderer.setSeriesFillPaint(seriesIdx, itemColor); } renderer.setSeriesOutlinePaint(seriesIdx, PlotConfiguration.DEFAULT_SERIES_OUTLINE_PAINT); renderer.setUseOutlinePaint(true); } }
From source file:org.esa.beam.visat.toolviews.stat.StatisticsPanel.java
private static ChartPanel getScatterPlotPanel(XIntervalSeriesCollection dataset, String xAxisLabel, String yAxisLabel, Color color, double domainBounds[], double rangeBounds[]) { // JFreeChart chart = ChartFactory.createScatterPlot( JFreeChart chart = ChartFactory.createXYLineChart(null, xAxisLabel, yAxisLabel, dataset, PlotOrientation.VERTICAL, false, // Legend? true, // tooltips false // url );//from w w w . j ava 2s . co m final XYPlot xyPlot = chart.getXYPlot(); // xyPlot.setForegroundAlpha(0.85f); xyPlot.setBackgroundAlpha(0.0f); xyPlot.setNoDataMessage("No data"); xyPlot.setAxisOffset(new RectangleInsets(5, 5, 5, 10)); // todo Danny set bounds here // if (domainBounds[0] != domainBounds[1]) { // xyPlot.getDomainAxis().setLowerBound(domainBounds[0]); // xyPlot.getDomainAxis().setUpperBound(domainBounds[1]); // } // // if (rangeBounds[0] != rangeBounds[1]) { // xyPlot.getRangeAxis().setLowerBound(rangeBounds[0]); // xyPlot.getRangeAxis().setUpperBound(rangeBounds[1]); // } if (!Double.isNaN(domainBounds[0])) { xyPlot.getDomainAxis().setLowerBound(domainBounds[0]); } if (!Double.isNaN(domainBounds[1])) { xyPlot.getDomainAxis().setUpperBound(domainBounds[1]); } if (!Double.isNaN(rangeBounds[0])) { xyPlot.getRangeAxis().setLowerBound(rangeBounds[0]); } if (!Double.isNaN(rangeBounds[1])) { xyPlot.getRangeAxis().setUpperBound(rangeBounds[1]); } final XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) xyPlot.getRenderer(); renderer.setSeriesPaint(0, color); renderer.setUseFillPaint(true); renderer.setDrawOutlines(true); renderer.setSeriesShapesFilled(0, true); renderer.setSeriesFillPaint(0, color); ChartPanel chartPanel = new ChartPanel(chart); // chartPanel.setPreferredSize(new Dimension(300, 200)); return chartPanel; }
From source file:de.bund.bfr.knime.pmm.common.chart.ChartCreator.java
private void plotDataSetStrict(XYPlot plot, Plotable plotable, String id) throws ConvertException { String legend = shortLegend.get(id); List<Color> colorList = colorLists.get(id); List<Shape> shapeList = shapeLists.get(id); ColorAndShapeCreator creator = new ColorAndShapeCreator(plotable.getNumberOfCombinations()); int index = 0; if (addInfoInLegend) { legend = longLegend.get(id);//from w w w . ja v a 2 s .c o m } if (colorList == null || colorList.isEmpty()) { colorList = creator.getColorList(); } if (shapeList == null || shapeList.isEmpty()) { shapeList = creator.getShapeList(); } for (Map<String, Integer> choiceMap : plotable.getAllChoices()) { double[][] dataPoints = plotable.getPoints(paramX, paramY, unitX, unitY, transformX, transformY, choiceMap); if (dataPoints != null) { DefaultXYDataset dataSet = new DefaultXYDataset(); XYLineAndShapeRenderer dataRenderer = new XYLineAndShapeRenderer(drawLines, true); String addLegend = ""; for (String arg : choiceMap.keySet()) { if (!arg.equals(paramX)) { addLegend += " (" + arg + "=" + plotable.getFunctionArguments().get(arg).get(choiceMap.get(arg)) + ")"; } } dataSet.addSeries(legend + addLegend, dataPoints); dataRenderer.setBaseToolTipGenerator(new StandardXYToolTipGenerator()); dataRenderer.setSeriesPaint(0, colorList.get(index)); dataRenderer.setSeriesShape(0, shapeList.get(index)); int i; if (plot.getDataset(0) == null) { i = 0; } else { i = plot.getDatasetCount(); } plot.setDataset(i, dataSet); plot.setRenderer(i, dataRenderer); } index++; } }
From source file:edu.ucla.stat.SOCR.applications.demo.PortfolioApplication2.java
void updateGraph() { /* System.out.println("updateGraph get called----------------mouseClicked="+mouseClicked); Exception e = new Exception();// www . ja v a 2 s . co m e.printStackTrace();*/ // printMatrix(COVR, "after COVR"); // printMatrix(CORR, "after CORR"); //setupStockOptions(); p_serie = new XYSeries("Stock", false); t_serie = new XYSeries("Tangent", false); m_serie = new XYSeries("M", false); s_serie = new XYSeries("Positives", false); StringBuffer text = new StringBuffer(); text.append("mouse clicked at (Risk, Expected Return) = " + tooltip + "\n"); // text.append("The stock combinations are:"); for (int i = 0; i < chartDataPoints.getPointCount(); i++) { double point_x = chartDataPoints.getX(i); double point_y = chartDataPoints.getY(i); p_serie.add(point_x, point_y); // System.out.println("chart point " +(i+1)+" is ("+point_x+", "+point_y+")"); if (isAllPositive(chartDataPoints.getSDPpointer(i))) { s_serie.add(point_x, point_y); } } if (show_tangent) { t_serie.add(t1_x, t1_y); t_serie.add(t2_x, t2_y); } if (mouseClicked) { // System.out.println("mouse_x="+mouse_x+", mouse_y="+mouse_y); m_serie.add(mouse_x, mouse_y); } XYSeriesCollection ds = new XYSeriesCollection(); ds.addSeries(m_serie); ds.addSeries(t_serie); ds.addSeries(s_serie); ds.addSeries(p_serie); JFreeChart chart = ChartFactory.createXYLineChart("", // chart title "Risk (Standard Deviation)", // x axis label "Expected Return", // y axis label ds, // data PlotOrientation.VERTICAL, false, // include legend true, // tooltips false // urls ); chart.setBackgroundPaint(Color.white); XYPlot subplot1 = (XYPlot) chart.getPlot(); XYLineAndShapeRenderer renderer1 = (XYLineAndShapeRenderer) subplot1.getRenderer(); NumberAxis xAxis = (NumberAxis) subplot1.getDomainAxis(); NumberAxis yAxis = (NumberAxis) subplot1.getRangeAxis(); if (t2_x > 0) xAxis.setRange(0, t2_x); else xAxis.setRange(t2_x, 0); if (t2_y > 0) yAxis.setRange(-t2_y, t2_y); else yAxis.setRange(t2_y, -t2_y); renderer1.setSeriesPaint(3, Color.blue); renderer1.setSeriesPaint(2, Color.red); renderer1.setSeriesPaint(1, Color.red); renderer1.setSeriesPaint(0, Color.green); Shape shape = renderer1.getBaseShape(); renderer1.setSeriesShape(1, shape); renderer1.setSeriesShape(3, shape); renderer1.setSeriesLinesVisible(0, false); renderer1.setSeriesLinesVisible(1, true); renderer1.setSeriesLinesVisible(2, false); renderer1.setSeriesLinesVisible(3, false); // renderer1.setLinesVisible(); renderer1.setBaseShapesVisible(true); renderer1.setBaseShapesFilled(true); graphPanel.removeAll(); chartPanel = new ChartPanel(chart, false); chartPanel.setPreferredSize(new Dimension(CHART_SIZE_X, CHART_SIZE_Y)); chartPanel.addChartMouseListener(this); graphPanel.add(chartPanel); graphPanel.validate(); // super.updateGraph(chartPanel); // if (mouseClicked) { getRecordTable().setText(text.toString()); } else { text = new StringBuffer(); /* text.append("("+tooltip_formatter.format(minPoint.mean)+" , "+ tooltip_formatter.format(minPoint.std)+")\n"); for (int j=0; j<numStocks; j++) text.append("Stock "+(j+1)+" : x["+(j+1)+"]="+tooltip_formatter.format(minPoint.x[j])+"\n"); text.append("---\n");*/ getRecordTable().setText(text.toString()); ; } mouseClicked = false; }
From source file:org.yardstickframework.report.jfreechart.JFreeChartGraphPlotter.java
/** * @param folderToWrite Folder to write the resulted charts. * @param plots Collections of plots.//from w w w . j a v a 2s. com * @param infoMap Map with additional plot info. * @param mode Generation mode. * @throws Exception If failed. */ private static void processPlots(File folderToWrite, Collection<List<PlotData>> plots, Map<String, List<JFreeChartPlotInfo>> infoMap, JFreeChartGenerationMode mode) throws Exception { ChartRenderingInfo info = new ChartRenderingInfo(new StandardEntityCollection()); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(true, false); int idx = -1; while (true) { idx++; DefaultXYDataset dataSet = new DefaultXYDataset(); List<JFreeChartPlotInfo> infoList = new ArrayList<>(); String xAxisLabel = ""; String yAxisLabel = ""; String plotName = ""; int cnt = 0; for (List<PlotData> plotData0 : plots) { if (plotData0.size() <= idx) continue; PlotData plotData = plotData0.get(idx); dataSet.addSeries(plotData.plotName() + "_" + cnt++, plotData.series().data); xAxisLabel = plotData.xAxisLabel; yAxisLabel = plotData.yAxisLabel; plotName = plotData.plotName(); infoList.add(info(plotData.series(), mode)); } if (infoList.isEmpty()) break; JFreeChart chart = ChartFactory.createXYLineChart("", xAxisLabel, yAxisLabel, dataSet, PlotOrientation.VERTICAL, false, false, false); AxisSpace as = new AxisSpace(); as.add(150, RectangleEdge.LEFT); XYPlot plot = (XYPlot) chart.getPlot(); BasicStroke stroke = new BasicStroke(1); plot.setRenderer(renderer); plot.setBackgroundPaint(WHITE); plot.setRangeGridlinePaint(GRAY); plot.setDomainGridlinePaint(GRAY); plot.setFixedRangeAxisSpace(as); plot.setOutlineStroke(stroke); for (int i = 0; i < infoList.size(); i++) { Color color = PLOT_COLORS[i % PLOT_COLORS.length]; renderer.setSeriesPaint(i, color); renderer.setSeriesStroke(i, new BasicStroke(3)); // Line thickness. infoList.get(i).color(Integer.toHexString(color.getRGB()).substring(2)); } ValueAxis axis = plot.getRangeAxis(); Font font = new Font("Helvetica,Arial,sans-serif", Font.BOLD, axis.getTickLabelFont().getSize() + 5); axis.setTickLabelFont(font); axis.setLabelFont(font); plot.getDomainAxis().setTickLabelFont(font); plot.getDomainAxis().setLabelFont(font); chart.setTitle(new TextTitle(yAxisLabel, new Font(font.getName(), font.getStyle(), 30))); File res = new File(folderToWrite, plotName + ".png"); ChartUtilities.saveChartAsPNG(res, chart, 1000, 500, info); infoMap.put(res.getAbsolutePath(), infoList); println("Chart is saved to file: ", res); } }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.ProteinStudyComparisonScatterPlotLayout.java
/** * Creates a sample jFreeChart./*from www . jav a2 s .c o m*/ * * @param dataset the dataset. * * @return The jFreeChart. */ private void generateScatterplotchart(DiseaseGroupsComparisonsProteinLayout cp, int w, int h) { final XYSeriesCollection dataset = new XYSeriesCollection(); XYSeries downSer = new XYSeries(0); XYSeries stableSer = new XYSeries(1); XYSeries upSer = new XYSeries(2); XYSeries novalueProvidedSer = new XYSeries(3); XYSeries downSerII = new XYSeries(4); XYSeries stableSerII = new XYSeries(5); XYSeries upSerII = new XYSeries(6); XYSeries novalueProvidedSerII = new XYSeries(7); // XYSeries plusSeries = new XYSeries(6); double downCounter = 1; double stableCounter = 3; double upCounter = 5; double novalueProvidedCounter = 3; patientGroupsNumToDsIdMap.clear(); final Map<Integer, int[]> paTGrNumbtrendMap = new HashMap<Integer, int[]>(); double maxPatNumber = -1.0; for (String protTrend : cp.getPatientsNumToTrindMap().keySet()) { List<Integer> patNums = cp.getPatientsNumToTrindMap().get(protTrend); int coun = 0; for (int i : patNums) { if (i > maxPatNumber) { maxPatNumber = i; } if (!patientGroupsNumToDsIdMap.containsKey(i)) { ComparisonDetailsBean pGr = new ComparisonDetailsBean(); patientGroupsNumToDsIdMap.put(i, pGr); } if (!paTGrNumbtrendMap.containsKey(i)) { int[] values = new int[4]; paTGrNumbtrendMap.put(i, values); } int[] values = paTGrNumbtrendMap.get(i); ComparisonDetailsBean pGr = patientGroupsNumToDsIdMap.get(i); if (protTrend.equalsIgnoreCase("noValueProvided")) { values[3] = values[3] + 1; pGr.addNovalueProvided(cp.getDSID(3, coun)); } else if (protTrend.equalsIgnoreCase("up")) { values[2] = values[2] + 1; pGr.addUpRegulated(cp.getDSID(0, coun)); } else if (protTrend.equalsIgnoreCase("down")) { values[0] = values[0] + 1; pGr.addDownRegulated(cp.getDSID(2, coun)); } else { values[1] = values[1] + 1; pGr.addNotRegulated(cp.getDSID(1, coun)); } paTGrNumbtrendMap.put(i, values); patientGroupsNumToDsIdMap.put(i, pGr); coun++; } } for (int i : paTGrNumbtrendMap.keySet()) { int[] values = paTGrNumbtrendMap.get(i); if ((values[2] > 1)) { upSer.add(upCounter, i); upSerII.add(upCounter, i); } else if ((values[2] == 1)) { upSer.add(upCounter, i); } if ((values[1] == 1)) { stableSer.add(stableCounter, i); } else if ((values[1] > 1)) { stableSer.add(stableCounter, i); stableSerII.add(stableCounter, i); } if ((values[0] > 1)) { downSer.add(downCounter, i); downSerII.add(downCounter, i); } else if ((values[0] == 1)) { downSer.add(downCounter, i); } if ((values[3] == 1)) { novalueProvidedSer.add(novalueProvidedCounter, i); } else if ((values[3] > 1)) { novalueProvidedSer.add(stableCounter, i); novalueProvidedSerII.add(stableCounter, i); } } dataset.addSeries(downSer); dataset.addSeries(stableSer); dataset.addSeries(upSer); dataset.addSeries(novalueProvidedSer); dataset.addSeries(downSerII); dataset.addSeries(stableSerII); dataset.addSeries(upSerII); dataset.addSeries(novalueProvidedSerII); // if((downSerII.getItemCount()+stableSerII.getItemCount()+upSerII.getItemCount()+downSer.getItemCount()+stableSer.getItemCount()+upSer.getItemCount())==0) // return; // dataset.addSeries(plusSeries); final String[] labels = new String[] { " ", ("Decreased (" + cp.getSignificantDown() + ")"), " ", ("Equal (" + cp.getStable() + ")"), " ", ("Increased (" + cp.getSignificantUp() + ")"), "" }; final Color[] labelsColor = new Color[] { Color.LIGHT_GRAY, new Color(80, 183, 71), Color.LIGHT_GRAY, new Color(1, 141, 244), Color.LIGHT_GRAY, Color.RED, Color.LIGHT_GRAY }; final SymbolAxis domainAxis = new SymbolAxis("X", labels) { @Override protected void drawGridBandsVertical(Graphics2D g2, Rectangle2D drawArea, Rectangle2D plotArea, boolean firstGridBandIsDark, List ticks) { List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } // System.out.println("at ticks is "+ticks); // System.out.println("at udatedTicksList is "+udatedTicksList); // int factor = (int) ((plotArea.getHeight() / 5) * 0.25); // // Rectangle2D up = new Rectangle((int) drawArea.getX(), (int) drawArea.getY() - factor, (int) drawArea.getWidth(), (int) drawArea.getHeight()); // Rectangle2D pa = new Rectangle((int) plotArea.getX(), (int) plotArea.getY() - factor, (int) plotArea.getWidth(), (int) plotArea.getHeight()); super.drawGridBandsVertical(g2, drawArea, plotArea, firstGridBandIsDark, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } int x = 0; @Override public Paint getTickLabelPaint() { if (x >= labels.length) { x = 0; } return labelsColor[x++]; } }; domainAxis.setAutoRangeIncludesZero(false); Font f = new Font("Verdana", Font.PLAIN, 11); domainAxis.setTickLabelFont(f); domainAxis.setAutoRange(false); domainAxis.setLabel(null); // domainAxis.setGridBandsVisible(false); String xTile = "#Patients"; JFreeChart jFreeChart = ChartFactory.createScatterPlot(null, null, // domain axis label null, // range axis label dataset, // data PlotOrientation.HORIZONTAL, // orientation false, // include legend false, // tooltips? false // URLs? ); XYPlot plot1 = (XYPlot) jFreeChart.getPlot(); XYPlot xyplot = new XYPlot(dataset, plot1.getDomainAxis(), plot1.getRangeAxis(), plot1.getRenderer()) { @Override public void drawDomainTickBands(Graphics2D g2, Rectangle2D dataArea, List ticks) { if (custTrend == -1) { super.drawDomainTickBands(g2, dataArea, ticks); return; } List udatedTicksList = new ArrayList(); for (Object tick : ticks) { if (tick.toString().equalsIgnoreCase(labels[custTrend + 1])) { udatedTicksList.add(tick); } } Rectangle2D up; int factor = (int) ((dataArea.getHeight() / 5) * 0.5); if (custTrend == 4) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() + factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else if (custTrend == 2) { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } else { up = new Rectangle((int) dataArea.getX(), (int) dataArea.getY() - factor, (int) dataArea.getWidth(), (int) dataArea.getHeight()); } super.drawDomainTickBands(g2, up, udatedTicksList); //To change body of generated methods, choose Tools | Templates. } @Override protected void drawDomainGridlines(Graphics2D g2, Rectangle2D dataArea, List ticks) { super.drawDomainGridlines(g2, dataArea, ticks); //To change body of generated methods, choose Tools | Templates. } private int x = 0; @Override public Paint getDomainGridlinePaint() { if (x >= labels.length) { x = 0; } if (x == 1 || x == 3 || x == 5) { x++; return Color.WHITE; } else { x++; return super.getDomainGridlinePaint(); //To change body of generated methods, choose Tools | Templates. } } }; if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(Color.white); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(Color.white); } } else { domainAxis.setGridBandsVisible(false); } xyplot.setOrientation(PlotOrientation.HORIZONTAL); JFreeChart tempScatterPlot = new JFreeChart(xyplot); tempScatterPlot.setBackgroundPaint(Color.WHITE); tempScatterPlot.getLegend().setVisible(false); Color c = new Color(242, 242, 242); xyplot.setDomainAxis(domainAxis); xyplot.setDomainGridlinePaint(Color.GRAY); xyplot.setDomainGridlinesVisible(true); xyplot.setRangeGridlinesVisible(true); xyplot.setRangeGridlinePaint(Color.GRAY); xyplot.setOutlinePaint(Color.GRAY); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) xyplot.getRenderer(); ValueAxis va = xyplot.getDomainAxis(); va.setAutoRange(false); va.setMinorTickCount(0); va.setVisible(true); maxPatNumber = Math.ceil(maxPatNumber / 100.0) * 100; xyplot.getRangeAxis().setRange(0, maxPatNumber); NumberAxis rangeAxis = (NumberAxis) xyplot.getRangeAxis(); rangeAxis.setTickUnit(new NumberTickUnit(10)); rangeAxis.setLabel(xTile); rangeAxis.setLabelFont(f); rangeAxis.setLabelPaint(Color.GRAY); va.setRange(0, 6); xyplot.setBackgroundPaint(Color.WHITE); renderer.setUseOutlinePaint(true); Color c0 = new Color(80, 183, 71); renderer.setSeriesPaint(0, c0); renderer.setSeriesOutlinePaint(0, Color.WHITE); Color c1 = new Color(1, 141, 244); renderer.setSeriesPaint(1, c1); renderer.setSeriesOutlinePaint(1, Color.WHITE); Color c2 = new Color(204, 0, 0); renderer.setSeriesPaint(2, c2); renderer.setSeriesOutlinePaint(2, Color.WHITE); renderer.setSeriesPaint(3, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(3, Color.WHITE); renderer.setSeriesPaint(4, new Color(150, 212, 145)); renderer.setSeriesOutlinePaint(4, new Color(150, 212, 145)); renderer.setSeriesPaint(5, new Color(103, 187, 248)); renderer.setSeriesOutlinePaint(5, new Color(103, 187, 248)); renderer.setSeriesPaint(6, new Color(224, 102, 102)); renderer.setSeriesOutlinePaint(6, new Color(224, 102, 102)); renderer.setSeriesPaint(7, Color.decode("#b5babb")); renderer.setSeriesOutlinePaint(7, Color.GRAY); // renderer.setSeriesPaint(6, Color.BLACK); // renderer.setSeriesOutlinePaint(6, Color.BLACK); Shape downArr = ShapeUtilities.createDownTriangle(7f); Shape notRShape = ShapeUtilities.createDiamond(7f); Shape upArr = ShapeUtilities.createUpTriangle(7); Shape downArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDownTriangle(6f), 5, -5); Shape notRShapeII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createDiamond(6f), 0, -7); Shape upArrII = ShapeUtilities.createTranslatedShape(ShapeUtilities.createUpTriangle(6f), 4, -4); // Shape plus = ShapeUtilities.createTranslatedShape(ShapeUtilities.createRegularCross(3f, 0.4f), 11, -7); renderer.setSeriesShape(0, downArr); renderer.setSeriesShape(1, notRShape); renderer.setSeriesShape(2, upArr); renderer.setSeriesShape(3, notRShape); renderer.setSeriesShape(4, downArrII); renderer.setSeriesShape(5, notRShapeII); renderer.setSeriesShape(6, upArrII); renderer.setSeriesShape(7, notRShapeII); // renderer.setSeriesShape(6, plus); renderer.setBaseItemLabelsVisible(true); renderer.setBaseItemLabelGenerator(new SymbolicXYItemLabelGenerator() { private final int[] indexer = new int[] { 0, 1, 2, 3, 0, 1, 2, 3 }; @Override public String generateLabel(XYDataset dataset, int series, int category) { if (series > 3) { int patNumber = (int) dataset.getYValue(series, category); // int trend = (int) dataset.getXValue(series, category); if (series == 7 || series == 5) { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } else { return "\t " + paTGrNumbtrendMap.get(patNumber)[indexer[series]]; } } return ""; //To change body of generated methods, choose Tools | Templates. } }); ItemLabelPosition position = new ItemLabelPosition(ItemLabelAnchor.OUTSIDE12, TextAnchor.BASELINE_LEFT, TextAnchor.TOP_LEFT, 0.0); renderer.setSeriesPositiveItemLabelPosition(4, position); renderer.setSeriesPositiveItemLabelPosition(5, position); renderer.setSeriesPositiveItemLabelPosition(6, position); renderer.setSeriesPositiveItemLabelPosition(7, position); renderer.setBaseItemLabelFont(f); tempScatterPlot.setBorderVisible(false); xyplot.setSeriesRenderingOrder(SeriesRenderingOrder.REVERSE); heighlightedScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); xyplot.setBackgroundPaint(Color.WHITE); defaultScatterPlottImgUrl = saveToFile(tempScatterPlot, w, h, defaultScatterPlotRenderingInfo); // xyplot.setBackgroundPaint(c); if (custTrend != -1) { domainAxis.setGridBandsVisible(true); if (custTrend == 4) { domainAxis.setGridBandPaint(Color.decode("#ffe5e5")); xyplot.setDomainTickBandPaint(Color.decode("#ffe5e5")); domainAxis.setGridBandAlternatePaint(Color.decode("#ffe5e5")); } else if (custTrend == 0) { domainAxis.setGridBandPaint(Color.decode("#e5ffe5")); xyplot.setDomainTickBandPaint(c); } else if (custTrend == 2) { domainAxis.setGridBandPaint(Color.decode("#e6f4ff")); xyplot.setDomainTickBandPaint(c); } } String textTitle = comparisonTitle.getValue().split("bold;'>")[1].replace("</font>", ""); TextTitle title = new TextTitle(textTitle, f); scatterPlot = new JFreeChart(xyplot); scatterPlot.setTitle(title); scatterPlot.setBorderVisible(false); scatterPlot.setBackgroundPaint(Color.WHITE); scatterPlot.getLegend().setVisible(false); dsKeyDatasetMap.clear(); for (int i = 0; i < defaultScatterPlotRenderingInfo.getEntityCollection().getEntityCount(); i++) { final ChartEntity entity = defaultScatterPlotRenderingInfo.getEntityCollection().getEntity(i); if (entity instanceof XYItemEntity) { int x = ((XYItemEntity) entity).getSeriesIndex(); int y = ((XYItemEntity) entity).getItem(); if (((XYItemEntity) entity).getDataset().getYValue(x, y) > (int) ((XYItemEntity) entity).getDataset().getYValue(x, y)) { continue; } if (((XYItemEntity) entity).getSeriesIndex() > 3) { continue; } String[] arr = ((XYItemEntity) entity).getShapeCoords().split(","); int xSer = Integer.valueOf(arr[0]); int ySer = Integer.valueOf(arr[1]); int ySerEnd = Integer.valueOf(arr[3]); int patGrNumber = (int) ((XYItemEntity) entity).getDataset().getYValue(x, y); int trend = Integer.valueOf(((XYItemEntity) entity).getDataset() .getSeriesKey(((XYItemEntity) entity).getSeriesIndex()).toString()); ComparisonDetailsBean cpDetails = patientGroupsNumToDsIdMap.get(patGrNumber); List<Integer> dsList = cpDetails.getRegulatedList(trend); StringBuilder sb = new StringBuilder(); for (int dsId : dsList) { QuantDatasetObject ds; sb.append("<h4>").append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getAuthor()) .append(" ") .append((Quant_Central_Manager.getFullQuantDatasetMap().get(dsId)).getYear()) .append("<h4/>"); sb.append("<p></p>"); ds = Quant_Central_Manager.getFullQuantDatasetMap().get(dsId); dsKeyDatasetMap.put("_-_" + dsId + "_-_" + comparisonProtein.getProteinAccssionNumber() + "_-_", ds); } String tooltip = sb.toString().substring(0, sb.toString().length() - 7); SquaredDot square = new SquaredDot("squared"); if (paTGrNumbtrendMap.get(patGrNumber)[trend] > 1) { square.setWidth(20 + "px"); square.setHeight(15 + "px"); } else { square.setWidth(10 + "px"); square.setHeight(10 + "px"); } square.setDescription(tooltip); square.setParam("trend", trend); square.setParam("pGrNumber", patGrNumber); int top = (ySer - 4); if (ySer > ySerEnd) { top = ySerEnd - 3; } defaultChartLayout.addComponent(square, "left: " + (xSer - 5) + "px; top: " + top + "px;"); } } }