Example usage for org.jfree.chart.renderer.xy XYShapeRenderer setBaseCreateEntities

Introduction

In this page you can find the example usage for org.jfree.chart.renderer.xy XYShapeRenderer setBaseCreateEntities.

Prototype

public void setBaseCreateEntities(boolean create)

Source Link

Document

Sets the base flag that controls whether entities are created for a series, and sends a RendererChangeEvent to all registered listeners.

Usage

From source file:net.sf.maltcms.chromaui.foldChangeViewer.tasks.FoldChangeViewLoaderWorker.java

@Override
public void run() {
    ProgressHandle handle = ProgressHandleFactory.createHandle("Creating fold change plot");
    try {/*from   w w w .j a v a 2  s  .com*/
        handle.setDisplayName("Loading fold change elements");//+new File(this.files.getResourceLocation()).getName());
        handle.start(5);
        handle.progress("Reading settings", 1);
        RTUnit rtAxisUnit = RTUnit.valueOf(sp.getProperty("rtAxisUnit", "SECONDS"));
        handle.progress("Retrieving data", 2);
        XYShapeRenderer renderer = new XYShapeRenderer() {

            @Override
            protected Paint getPaint(XYDataset dataset, int series, int item) {
                double x = dataset.getXValue(series, item);
                double y = dataset.getYValue(series, item);
                if (Math.abs(x) < 1.0) {
                    Paint p = super.getPaint(dataset, series, item);
                    if (p instanceof Color) {
                        Color color = (Color) p;
                        float[] values = Color.RGBtoHSB(color.getRed(), color.getGreen(), color.getBlue(),
                                new float[3]);
                        Color hsb = new Color(
                                Color.HSBtoRGB(values[0], (float) Math.max(0.1, values[1] - 0.9), values[2]));
                        return new Color(hsb.getRed(), hsb.getGreen(), hsb.getBlue(), 64);
                    }
                }
                return super.getPaint(dataset, series, item);
            }

        };
        renderer.setAutoPopulateSeriesFillPaint(true);
        renderer.setAutoPopulateSeriesOutlinePaint(true);
        renderer.setBaseCreateEntities(true);
        handle.progress("Building plot", 3);
        XYPlot plot = new XYPlot(dataset, new NumberAxis("log2 fold change"), new NumberAxis("-log10 p-value"),
                renderer);
        BasicStroke dashed = new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 5.0f,
                new float[] { 5.0f }, 0.0f);
        ValueMarker marker = new ValueMarker(-Math.log10(0.05), Color.RED, dashed);
        marker.setLabel("p-value=0.05");
        marker.setLabelAnchor(RectangleAnchor.BOTTOM_LEFT);
        marker.setLabelOffset(new RectangleInsets(UnitType.ABSOLUTE, 0, 50, 10, 0));
        marker.setLabelOffsetType(LengthAdjustmentType.EXPAND);
        marker.setLabelPaint(Color.LIGHT_GRAY);
        plot.addRangeMarker(marker);

        Font font1 = new Font("SansSerif", Font.PLAIN, 12);
        SelectionAwareXYTooltipGenerator tooltipGenerator = cvtc.getLookup()
                .lookup(SelectionAwareXYTooltipGenerator.class);
        if (tooltipGenerator == null) {
            tooltipGenerator = new SelectionAwareXYTooltipGenerator(tooltipGenerator) {
                @Override
                public String createSelectionAwareTooltip(XYDataset xyd, int i, int i1) {
                    FoldChangeDataset dataset = (FoldChangeDataset) xyd;
                    FoldChangeElement fce = dataset.getNamedElementProvider().get(i).get(i1);
                    StringBuilder sb = new StringBuilder();
                    sb.append("<html>");
                    sb.append(fce.getPeakGroup().getMajorityDisplayName());
                    sb.append("<br>");
                    sb.append("log2 fold change=");
                    sb.append(fce.getFoldChange());
                    sb.append("<br>");
                    sb.append("p-value=");
                    sb.append(Math.pow(10, -fce.getPvalue()));
                    sb.append("</html>");
                    return sb.toString();
                }
            };
        }
        tooltipGenerator.setXYToolTipGenerator(new XYToolTipGenerator() {
            @Override
            public String generateToolTip(XYDataset xyd, int i, int i1) {
                Comparable comp = xyd.getSeriesKey(i);
                double x = xyd.getXValue(i, i1);
                double y = xyd.getYValue(i, i1);
                StringBuilder sb = new StringBuilder();
                sb.append("<html>");
                sb.append(comp);
                sb.append("<br>");
                sb.append("log2 fold change=");
                sb.append(x);
                sb.append("<br>");
                sb.append("p-value=");
                sb.append(sb.append(Math.pow(10, -y)));
                sb.append("</html>");
                return sb.toString();
            }
        });
        plot.getRenderer().setBaseToolTipGenerator(tooltipGenerator);
        handle.progress("Configuring plot", 4);
        configurePlot(plot, rtAxisUnit);
        final FoldChangeViewPanel cmhp = cvtc.getLookup().lookup(FoldChangeViewPanel.class);
        Range domainRange = null;
        Range valueRange = null;
        if (cmhp != null) {
            XYPlot xyplot = cmhp.getPlot();
            if (xyplot != null) {
                ValueAxis domain = xyplot.getDomainAxis();
                domainRange = domain.getRange();
                ValueAxis range = xyplot.getRangeAxis();
                valueRange = range.getRange();
            }
        }

        if (domainRange != null) {
            plot.getDomainAxis().setRange(domainRange);
        }
        if (valueRange != null) {
            Logger.getLogger(getClass().getName()).info("Setting previous value range!");
        }
        handle.progress("Adding plot to panel", 5);
        final XYPlot targetPlot = plot;
        SwingUtilities.invokeLater(new Runnable() {
            @Override
            public void run() {
                final FoldChangeViewPanel cmhp = cvtc.getLookup().lookup(FoldChangeViewPanel.class);
                cmhp.setPlot(targetPlot);
                cvtc.requestActive();
            }
        });
    } finally {
        handle.finish();
    }
}