Example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset add

List of usage examples for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset add

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Introduction

In this page you can find the example usage for org.jfree.data.statistics DefaultBoxAndWhiskerCategoryDataset add.

Prototype

public void add(BoxAndWhiskerItem item, Comparable rowKey, Comparable columnKey)

Source Link

Document

Adds a list of values relating to one Box and Whisker entity to the table.

Usage

From source file:gov.nih.nci.cma.web.graphing.GEPlot.java

public String generateBWLog2IntensityChart(String xAxisLabel, String yAxisLabel, HttpSession session,
        PrintWriter pw, boolean isCoinPlot) {
    String bwFilename = "";

    //PlotSize ps = PlotSize.MEDIUM;

    JFreeChart bwChart = null;//from   ww w .j  a v  a  2 s .com
    try {
        //IMAGE Size Control

        CategoryAxis xAxis = new CategoryAxis(xAxisLabel);
        xAxis.setCategoryLabelPositions(CategoryLabelPositions.DOWN_45);
        NumberAxis yAxis = new NumberAxis(yAxisLabel);
        yAxis.setAutoRangeIncludesZero(true);
        BoxAndWhiskerCoinPlotRenderer bwRenderer = null;
        CategoryPlot bwPlot = null;

        if (isCoinPlot) {
            Map<String, List<Double>> groupMap = rawDataMap.get(reporterName);
            DefaultBoxAndWhiskerCategoryDataset smallBwdataset = new DefaultBoxAndWhiskerCategoryDataset();
            int row = 0;
            int column = 0;
            HashMap<String, List> caIntegatorCoinList = new HashMap<String, List>();
            for (String group : groupList) {
                smallBwdataset.add(groupMap.get(group), reporterName, group);
                caIntegatorCoinList.put(row + "_" + column++, groupMap.get(group));
            }
            bwRenderer = new BoxAndWhiskerCoinPlotRenderer(caIntegatorCoinList);
            bwRenderer.setDisplayAllOutliers(true);
            bwRenderer.setDisplayCoinCloud(true);
            bwRenderer.setDisplayMean(false);
            bwRenderer.setFillBox(false);
            bwRenderer.setPlotColor(null);
            bwPlot = new CategoryPlot(smallBwdataset, xAxis, yAxis, bwRenderer);

            if (groupList.size() < 6)
                imgW = 200;

        } else {
            bwRenderer = new BoxAndWhiskerCoinPlotRenderer();
            bwRenderer.setDisplayAllOutliers(true);
            bwRenderer.setBaseToolTipGenerator(new CategoryToolTipGenerator() {
                public String generateToolTip(CategoryDataset dataset, int series, int item) {
                    String tt = "";
                    NumberFormat formatter = new DecimalFormat(".####");
                    String key = "";
                    //String s = formatter.format(-1234.567);  // -001235
                    if (dataset instanceof DefaultBoxAndWhiskerCategoryDataset) {
                        DefaultBoxAndWhiskerCategoryDataset ds = (DefaultBoxAndWhiskerCategoryDataset) dataset;
                        try {
                            String med = formatter.format(ds.getMedianValue(series, item));
                            tt += "Median: " + med + "<br/>";
                            tt += "Mean: " + formatter.format(ds.getMeanValue(series, item)) + "<br/>";
                            tt += "Q1: " + formatter.format(ds.getQ1Value(series, item)) + "<br/>";
                            tt += "Q3: " + formatter.format(ds.getQ3Value(series, item)) + "<br/>";
                            tt += "Max: " + formatter.format(
                                    FaroutOutlierBoxAndWhiskerCalculator.getMaxFaroutOutlier(ds, series, item))
                                    + "<br/>";
                            tt += "Min: " + formatter.format(
                                    FaroutOutlierBoxAndWhiskerCalculator.getMinFaroutOutlier(ds, series, item))
                                    + "<br/>";
                            tt += "<br/><br/>Please click on the box and whisker to view a plot for this reporter.<br/>";
                            key = ds.getRowKeys().get(series).toString();
                        } catch (Exception e) {
                        }
                    }
                    String returnString = "onclick=\"popCoin('" + geneSymbol + "','" + key + "');\" | ";

                    return returnString + tt;
                }
            });
            bwRenderer.setFillBox(false);
            bwPlot = new CategoryPlot(bwdataset, xAxis, yAxis, bwRenderer);
        }

        bwChart = new JFreeChart(bwPlot);

        bwChart.setBackgroundPaint(java.awt.Color.white);
        LegendTitle title = bwChart.getLegend();
        LegendItemSource[] sources = title.getSources();

        legendItemCollection = sources[0].getLegendItems();
        bwChart.removeLegend();

        // Write the chart image to the temporary directory
        ChartRenderingInfo info = new ChartRenderingInfo(new StandardEntityCollection());

        // BW
        if (bwChart != null) {
            //int bwwidth = new BigDecimal(1.5).multiply(new BigDecimal(imgW)).intValue();
            bwFilename = ServletUtilities.saveChartAsPNG(bwChart, imgW, 400, info, session);
            CustomOverlibToolTipTagFragmentGenerator ttip = new CustomOverlibToolTipTagFragmentGenerator();
            ttip.setExtra(" href='javascript:void(0);' "); //must have href for area tags to have cursor:pointer
            ChartUtilities.writeImageMap(pw, bwFilename, info, ttip, new StandardURLTagFragmentGenerator());
            info.clear(); // lose the first one
            info = new ChartRenderingInfo(new StandardEntityCollection());
        }
        //END  BW

        pw.flush();

    } catch (Exception e) {
        System.out.println("Exception - " + e.toString());
        e.printStackTrace(System.out);
    }
    // return filename;
    //charts.put("errorBars", log2Filename);
    //charts.put("noErrorBars", rawFilename);
    //charts.put("bwFilename", bwFilename);
    //charts.put("legend", legendHtml);
    //charts.put("size", ps.toString());

    return bwFilename;
}

From source file:smellminer.engine.JFreeChartDemo.java

/**
 * Creates a sample dataset.//from w ww . j  a  v  a 2  s  .c  om
 * 
 * @return A sample dataset.
 */
public DefaultBoxAndWhiskerCategoryDataset createSampleDataset() {

    final int seriesCount = 3;
    final int categoryCount = 4;
    final int entityCount = 22;

    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int i = 0; i < seriesCount; i++) {
        for (int j = 0; j < categoryCount; j++) {
            final List list = new ArrayList();
            // add some values...
            for (int k = 0; k < entityCount; k++) {
                final double value1 = 10.0 + Math.random() * 3;
                list.add(new Double(value1));
                final double value2 = 11.25 + Math.random(); // concentrate values in the middle
                list.add(new Double(value2));
            }
            LOGGER.debug("Adding series " + i);
            LOGGER.debug(list.toString());
            dataset.add(list, "Series " + i, " Type " + j);
        }

    }

    return dataset;
}

From source file:org.jfree.chart.demo.BoxAndWhiskerDemo.java

/**
 * Creates a sample dataset.//from w w  w .ja va  2s  .c  o  m
 * 
 * @return A sample dataset.
 */
private BoxAndWhiskerCategoryDataset createSampleDataset() {

    final int seriesCount = 3;
    final int categoryCount = 4;
    final int entityCount = 22;

    final DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    for (int i = 0; i < seriesCount; i++) {
        for (int j = 0; j < categoryCount; j++) {
            final List list = new ArrayList();
            // add some values...
            for (int k = 0; k < entityCount; k++) {
                final double value1 = 10.0 + Math.random() * 3;
                list.add(new Double(value1));
                final double value2 = 11.25 + Math.random(); // concentrate values in the middle
                list.add(new Double(value2));
            }
            LOGGER.debug("Adding series " + i);
            LOGGER.debug(list.toString());
            dataset.add(list, "Series " + i, " Type " + j);
        }

    }

    return dataset;
}

From source file:edu.ucla.stat.SOCR.chart.SuperBoxAndWhiskerChart_Vertical.java

/**
 * /*w w  w . ja v  a 2s.c o  m*/
 * @param isDemo data come from demo(true) or dataTable(false)
 * @return
 */
protected BoxAndWhiskerCategoryDataset createDataset(boolean isDemo) {

    if (isDemo) {
        SERIES_COUNT = 3;
        // CATEGORY_COUNT = 5;
        VALUE_COUNT = 20;

        values_storage = new String[SERIES_COUNT][CATEGORY_COUNT];

        DefaultBoxAndWhiskerCategoryDataset result = new DefaultBoxAndWhiskerCategoryDataset();
        for (int s = 0; s < SERIES_COUNT; s++) {
            for (int c = 0; c < CATEGORY_COUNT; c++) {
                List values = createValueList(0, 20.0, VALUE_COUNT);
                values_storage[s][c] = vs;
                result.add(values, "Series " + s, "Category " + c);
            }
        }
        return result;
    }

    else {

        setArrayFromTable();

        String[][] x = new String[xyLength][dependentVarLength];
        String[][] y = new String[xyLength][independentVarLength];

        for (int index = 0; index < dependentVarLength; index++)
            for (int i = 0; i < xyLength; i++)
                x[i][index] = depValues[i][index];

        // create the dataset... 
        DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
        SERIES_COUNT = dependentVarLength;
        //CATEGORY_COUNT = independentVarLength;

        values_storage = new String[SERIES_COUNT][CATEGORY_COUNT];

        for (int s = 0; s < SERIES_COUNT; s++)
            for (int c = 0; c < CATEGORY_COUNT; c++) {
                String v = "";
                for (int i = 0; i < xyLength; i++)
                    if (x[i][s] != null && x[i][s].length() != 0)
                        v = v + x[i][s] + ",";

                values_storage[s][c] = v;
                dataset.add(createValueList(v), dependentHeaders[s], "Category " + c);

            }

        return dataset;
    }
}

From source file:de.hs.mannheim.modUro.reader.BoxAndWhiskersPlotDiagram.java

/**
 * Creates dataset for BoxWhiskerPlot.//from w  w  w. j  a va  2 s .co  m
 *
 * @return
 */
private BoxAndWhiskerCategoryDataset createDataset() {

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

    List<String> sortedModels = bwpModel.getModelTypeName();
    sortedModels.sort(String::compareTo);
    for (String model : sortedModels) {
        StatisticValues stat = bwpModel.getStatisticValues().get(model);
        BoxAndWhiskerItem item = new BoxAndWhiskerItem(stat.getMean(), stat.getSecondPercentile(),
                stat.getFirstPercentile(), stat.getLastPercentile(), stat.getMin(), stat.getMax(),
                stat.getMin(), stat.getMax(), new ArrayList<>());
        // Second parameter is the row key (?), using always the same works:
        int n = stat.size();
        dataset.add(item, "", model + " (n=" + n + ")");
    }
    return dataset;
}

From source file:adapters.BoxSeriesCollectionAdapter.java

/**
 * Modified Method: change label from serie to Cluster plus the number of instances in the cluster
 *
 * Creates a new <TT>BoxSeriesCollection</TT> instance with default
 *    parameters and given data series. The input parameter represents series
 *    of point sets.//from   w  w  w.  ja v a 2  s  .  c  o m
 *
 * @param data series of point sets.
 *
 *
 */
public BoxSeriesCollectionAdapter(double[]... data) {
    renderer = new BoxAndWhiskerRenderer();
    seriesCollection = new DefaultBoxAndWhiskerCategoryDataset();

    DefaultBoxAndWhiskerCategoryDataset tempSeriesCollection = (DefaultBoxAndWhiskerCategoryDataset) seriesCollection;

    for (int i = 0; i < data.length; i++) {
        if (data[i].length == 0)
            throw new IllegalArgumentException("Unable to render the plot. data[" + i + "] contains no row");
        final List<Double> list = new ArrayList<Double>();
        for (int j = 0; j < data[i].length - 1; j++)
            list.add(data[i][j]);

        // "i + 1" since the cluster label should start with 1 instead of 0
        tempSeriesCollection.add(list, 0, "[ " + data[i].length + " ]");
        list.clear();
    }
    ((BoxAndWhiskerRenderer) renderer).setMaximumBarWidth(BARWIDTH);
}

From source file:edu.ucla.stat.SOCR.chart.SuperBoxAndWhiskerChart.java

/**
 * //ww  w .j a v a 2  s.c o m
 * @param isDemo data come from demo(true) or dataTable(false)
 * @return
 */
protected BoxAndWhiskerCategoryDataset createDataset(boolean isDemo) {

    if (isDemo) {
        SERIES_COUNT = 3;
        CATEGORY_COUNT = 5;
        VALUE_COUNT = 20;

        values_storage = new String[SERIES_COUNT][CATEGORY_COUNT];

        DefaultBoxAndWhiskerCategoryDataset result = new DefaultBoxAndWhiskerCategoryDataset();
        for (int s = 0; s < SERIES_COUNT; s++) {
            for (int c = 0; c < CATEGORY_COUNT; c++) {
                List values = createValueList(0, 20.0, VALUE_COUNT);
                values_storage[s][c] = vs;
                result.add(values, "Series " + s, "Category " + c);
            }
        }
        return result;
    }

    else {
        trimColumn = true;
        setArrayFromTable();

        String[][] x = new String[xyLength][independentVarLength];
        String[][] y = new String[xyLength][dependentVarLength];

        for (int index = 0; index < independentVarLength; index++)
            for (int i = 0; i < xyLength; i++)
                x[i][index] = indepValues[i][index];

        SERIES_COUNT = 0;
        for (int index = 0; index < dependentVarLength; index++)
            for (int i = 0; i < xyLength; i++) {
                if (depValues[i][index] != null) {
                    y[i][index] = depValues[i][index];
                    SERIES_COUNT++;
                }
            }

        // create the dataset... 
        DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();

        CATEGORY_COUNT = independentVarLength;

        values_storage = new String[SERIES_COUNT][CATEGORY_COUNT];

        for (int s = 0; s < SERIES_COUNT; s++)
            for (int c = 0; c < CATEGORY_COUNT; c++) {
                if (x[s][c] == null || x[s][c].length() == 0) {
                    x[s][c] = "0.0, 0.0";
                }
                if (y[s][0] != null) {
                    dataset.add(createValueList(x[s][c]), y[s][0], independentHeaders[c]);
                    values_storage[s][c] = x[s][c];
                }

            }

        return dataset;
    }
}

From source file:playground.christoph.evacuation.analysis.EvacuationTimePictureWriter.java

private JFreeChart createBoxplotChart(List<Double> travelTimes) {

    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    dataset.add(travelTimes, "Series", "");

    JFreeChart chart = ChartFactory.createBoxAndWhiskerChart(null, null, "evacuation travel time", dataset,
            false);//from   w w w. jav a 2  s.co  m
    chart.getCategoryPlot().setForegroundAlpha(0.75f);
    return chart;
}

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.SingleCellAnalysisController.java

/**
 * Generate the dataset for the box plot with the track speeds.
 *
 * @return a DefaultBoxAndWhiskerCategoryDataset
 */// www.  jav  a  2  s  .c o  m
private DefaultBoxAndWhiskerCategoryDataset getSpeedBoxPlotDataset() {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    singleCellMainController.getFilteringMap().keySet().stream().forEach((singleCellConditionDataHolder) -> {
        dataset.add(Arrays.asList(singleCellConditionDataHolder.getTrackSpeedsVector()),
                singleCellConditionDataHolder.getPlateCondition().toString(), "");
    });
    return dataset;
}

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.SingleCellAnalysisController.java

/**
 * Generate the dataset for the box plot with the track directionality
 * values.//w  w w  . jav a2  s  .c o  m
 *
 * @return a DefaultBoxAndWhiskerCategoryDataset
 */
private DefaultBoxAndWhiskerCategoryDataset getDirecBoxPlotDataset() {
    DefaultBoxAndWhiskerCategoryDataset dataset = new DefaultBoxAndWhiskerCategoryDataset();
    singleCellMainController.getFilteringMap().keySet().stream().forEach((singleCellConditionDataHolder) -> {
        dataset.add(Arrays.asList(singleCellConditionDataHolder.getEndPointDirectionalityRatios()),
                singleCellConditionDataHolder.getPlateCondition().toString(), "");
    });
    return dataset;
}