List of usage examples for org.jfree.data.xy XIntervalSeries add
public void add(double x, double xLow, double xHigh, double y)
From source file:org.esa.beam.visat.toolviews.stat.HistogramPanel.java
private void setStx(Stx stx) { if (stx != null) { HistogramPanelModel.HistogramConfig config = createHistogramConfig(); if (config == null) { return; }/*ww w. ja v a 2 s.c o m*/ if (!model.hasStx(config)) { model.setStx(config, stx); } dataset = new XIntervalSeriesCollection(); final int[] binCounts = stx.getHistogramBins(); final RasterDataNode raster = getRaster(); final XIntervalSeries series = new XIntervalSeries(raster.getName()); final Histogram histogram = stx.getHistogram(); for (int i = 0; i < binCounts.length; i++) { final double xMin = histogram.getBinLowValue(0, i); final double xMax = i < binCounts.length - 1 ? histogram.getBinLowValue(0, i + 1) : histogram.getHighValue(0); series.add(xMin, xMin, xMax, binCounts[i]); } dataset.addSeries(series); } handleStxChange(); }
From source file:org.jax.haplotype.analysis.visualization.GenomicGraphFactory.java
/** * Convert the intervals & values to a dataset that JFreeChart can use * @param snpIntervals//from www.ja va 2s . c om * the intervals * @param visualInterval * the visual interval that we should use * @return * the data set */ private XYDataset createSnpIntervalHistogramData(final List<? extends RealValuedBasePairInterval> snpIntervals, final HighlightedSnpInterval visualInterval) { XIntervalSeriesCollection dataset = new XIntervalSeriesCollection(); XIntervalSeries series = new XIntervalSeries("Interval Values", false, true); XIntervalSeries highlightSeries = new XIntervalSeries("Highlighted Interval Values", false, true); int endIndex = visualInterval.getEndIndex(); int[] highlightIndices = visualInterval.getIndicesToHighlight(); for (int i = visualInterval.getStartIndex(); i <= endIndex; i++) { RealValuedBasePairInterval currSnpInterval = snpIntervals.get(i); boolean highlight = false; for (int j = 0; j < highlightIndices.length; j++) { if (i == highlightIndices[j]) { highlight = true; break; } } if (highlight) { highlightSeries.add(currSnpInterval.getStartInBasePairs(), currSnpInterval.getStartInBasePairs(), currSnpInterval.getEndInBasePairs(), currSnpInterval.getRealValue()); } else { series.add(currSnpInterval.getStartInBasePairs(), currSnpInterval.getStartInBasePairs(), currSnpInterval.getEndInBasePairs(), currSnpInterval.getRealValue()); } } dataset.addSeries(series); dataset.addSeries(highlightSeries); return dataset; }
From source file:org.esa.beam.visat.toolviews.stat.StatisticsPanel.java
private JPanel createStatPanel(Stx stx, final Mask regionalMask, final Mask qualityMask, int stxIdx, RasterDataNode raster) {/*from w w w. j av a 2 s. c o m*/ final Histogram histogram = stx.getHistogram(); final int row = stxIdx + 1; // account for header boolean includeFileMetaData = statisticsCriteriaPanel.isIncludeFileMetaData(); boolean includeMaskMetaData = statisticsCriteriaPanel.isIncludeMaskMetaData(); boolean includeBandMetaData = statisticsCriteriaPanel.isIncludeBandMetaData(); boolean includeBinningInfo = statisticsCriteriaPanel.isIncludeBinningInfo(); ; boolean includeTimeMetaData = statisticsCriteriaPanel.isIncludeTimeMetaData(); boolean isIncludeTimeSeriesMetaData = statisticsCriteriaPanel.isIncludeTimeSeriesMetaData(); boolean includeProjectionParameters = statisticsCriteriaPanel.isIncludeProjectionParameters(); boolean includeColumnBreaks = statisticsCriteriaPanel.isIncludeColBreaks(); // Initialize all spreadsheet table indices to -1 (default don't use value) if (stxIdx == 0 || metaDataFieldsHashMap == null || primaryStatisticsFieldsHashMap == null) { initHashMaps(); } XIntervalSeries histogramSeries = new XIntervalSeries("Histogram"); double histDomainBounds[] = { histogram.getLowValue(0), histogram.getHighValue(0) }; double histRangeBounds[] = { Double.NaN, Double.NaN }; if (!fixedHistDomainAllPlots || (fixedHistDomainAllPlots && !fixedHistDomainAllPlotsInitialized)) { if (!statisticsCriteriaPanel.isLogMode()) { if (statisticsCriteriaPanel.plotsThreshDomainSpan()) { if (statisticsCriteriaPanel.plotsThreshDomainLow() >= 0.1) { histDomainBounds[0] = histogram .getPTileThreshold((statisticsCriteriaPanel.plotsThreshDomainLow()) / 100)[0]; } if (statisticsCriteriaPanel.plotsThreshDomainHigh() <= 99.9) { histDomainBounds[1] = histogram .getPTileThreshold(statisticsCriteriaPanel.plotsThreshDomainHigh() / 100)[0]; } } else if (statisticsCriteriaPanel.plotsDomainSpan()) { if (!Double.isNaN(statisticsCriteriaPanel.plotsDomainLow())) { histDomainBounds[0] = statisticsCriteriaPanel.plotsDomainLow(); } if (!Double.isNaN(statisticsCriteriaPanel.plotsDomainHigh())) { histDomainBounds[1] = statisticsCriteriaPanel.plotsDomainHigh(); } } } else { histDomainBounds[0] = histogram.getBinLowValue(0, 0); histDomainBounds[1] = histogram.getHighValue(0); } // if (!LogMode && plotsThreshDomainSpan && plotsThreshDomainLow >= 0.1 && plotsThreshDomainHigh <= 99.9) { // histDomainBounds[0] = histogram.getPTileThreshold((plotsThreshDomainLow) / 100)[0]; // histDomainBounds[1] = histogram.getPTileThreshold(plotsThreshDomainHigh / 100)[0]; // // } else { // histDomainBounds[0] = histogram.getBinLowValue(0, 0); // histDomainBounds[1] = histogram.getHighValue(0); // } if (fixedHistDomainAllPlots && !fixedHistDomainAllPlotsInitialized) { histDomainBoundsAllPlots[0] = histDomainBounds[0]; histDomainBoundsAllPlots[1] = histDomainBounds[1]; fixedHistDomainAllPlotsInitialized = true; } } else { histDomainBounds[0] = histDomainBoundsAllPlots[0]; histDomainBounds[1] = histDomainBoundsAllPlots[1]; } int[] bins = histogram.getBins(0); for (int j = 0; j < bins.length; j++) { histogramSeries.add(histogram.getBinLowValue(0, j), histogram.getBinLowValue(0, j), j < bins.length - 1 ? histogram.getBinLowValue(0, j + 1) : histogram.getHighValue(0), bins[j]); } String logTitle = (statisticsCriteriaPanel.isLogMode()) ? "Log10 of " : ""; ChartPanel histogramPanel = createChartPanel(histogramSeries, logTitle + raster.getName() + " (" + raster.getUnit() + ")", "Frequency in #Pixels", new Color(0, 0, 127), histDomainBounds, histRangeBounds); // histogramPanel.setPreferredSize(new Dimension(300, 200)); if (statisticsCriteriaPanel.exactPlotSize()) { histogramPanel.setMinimumSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); histogramPanel.setPreferredSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); histogramPanel.setMaximumSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); } else { histogramPanel.setMinimumSize(new Dimension(plotMinWidth, plotMinHeight)); histogramPanel.setPreferredSize(new Dimension(plotMinWidth, plotMinHeight)); } XIntervalSeries percentileSeries = new XIntervalSeries("Percentile"); // if (1 == 2 && LogMode) { // percentileSeries.add(0, // 0, // 1, // Math.pow(10, histogram.getLowValue(0))); // for (int j = 1; j < 99; j++) { // percentileSeries.add(j, // j, // j + 1, // Math.pow(10, histogram.getPTileThreshold(j / 100.0)[0])); // } // percentileSeries.add(99, // 99, // 100, // Math.pow(10, histogram.getHighValue(0))); // // } else { // percentileSeries.add(0, // 0, // 0.25, // histogram.getLowValue(0)); // // for (double j = 0.25; j < 99.75; j += .25) { // percentileSeries.add(j, // j, // j + 1, // histogram.getPTileThreshold(j / 100.0)[0]); // } // percentileSeries.add(99.75, // 99.75, // 100, // histogram.getHighValue(0)); // } // // double fraction = 0; // for (int j = 0; j < bins.length; j++) { // // fraction = (1.0) * j / bins.length; // // if (fraction > 0 && fraction < 1) { // percentileSeries.add(histogram.getBinLowValue(0, j), // histogram.getBinLowValue(0, j), // j < bins.length - 1 ? histogram.getBinLowValue(0, j + 1) : histogram.getHighValue(0), // histogram.getPTileThreshold(fraction)[0]); // } // // // } // // double test = fraction; double[] percentileDomainBounds = { Double.NaN, Double.NaN }; double[] percentileRangeBounds = { Double.NaN, Double.NaN }; ChartPanel percentilePanel = null; if (invertPercentile) { double increment = .01; for (double j = 0; j < 100; j += increment) { double fraction = j / 100.0; double nextFraction = (j + increment) / 100.0; if (fraction > 0.0 && fraction < 1.0 && nextFraction > 0.0 && nextFraction < 1.0) { double thresh = histogram.getPTileThreshold(fraction)[0]; double nextThresh = histogram.getPTileThreshold(nextFraction)[0]; percentileSeries.add(thresh, thresh, nextThresh, j); } } if (!statisticsCriteriaPanel.isLogMode()) { percentileDomainBounds[0] = histDomainBounds[0]; percentileDomainBounds[1] = histDomainBounds[1]; } percentileRangeBounds[0] = 0; percentileRangeBounds[1] = 100; percentilePanel = createScatterChartPanel(percentileSeries, logTitle + raster.getName() + " (" + raster.getUnit() + ")", "Percent Threshold", new Color(0, 0, 0), percentileDomainBounds, percentileRangeBounds); } else { percentileSeries.add(0, 0, 0.25, histogram.getLowValue(0)); for (double j = 0.25; j < 99.75; j += .25) { percentileSeries.add(j, j, j + 1, histogram.getPTileThreshold(j / 100.0)[0]); } percentileSeries.add(99.75, 99.75, 100, histogram.getHighValue(0)); percentileDomainBounds[0] = 0; percentileDomainBounds[1] = 100; percentileRangeBounds[0] = histDomainBounds[0]; percentileRangeBounds[1] = histDomainBounds[1]; percentilePanel = createScatterChartPanel(percentileSeries, "Percent_Threshold", logTitle + raster.getName() + " (" + raster.getUnit() + ")", new Color(0, 0, 0), percentileDomainBounds, percentileRangeBounds); } // percentilePanel.setPreferredSize(new Dimension(300, 200)); if (statisticsCriteriaPanel.exactPlotSize()) { percentilePanel.setMinimumSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); percentilePanel.setPreferredSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); percentilePanel.setMaximumSize(new Dimension(statisticsCriteriaPanel.plotSizeWidth(), statisticsCriteriaPanel.plotSizeHeight())); } else { percentilePanel.setMinimumSize(new Dimension(plotMinWidth, plotMinHeight)); percentilePanel.setPreferredSize(new Dimension(plotMinWidth, plotMinHeight)); } int size = raster.getRasterHeight() * raster.getRasterWidth(); int validPixelCount = histogram.getTotals()[0]; int dataRows = 0; // new Object[]{"RasterSize(Pixels)", size}, // new Object[]{"SampleSize(Pixels)", histogram.getTotals()[0]}, Object[][] totalPixels = null; if (statisticsCriteriaPanel.includeTotalPixels()) { int totalPixelCount = stx.getRawTotal(); double percentFilled = (totalPixelCount > 0) ? (1.0 * validPixelCount / totalPixelCount) : 0; totalPixels = new Object[][] { new Object[] { "Regional_Pixels", stx.getRawTotal() }, new Object[] { "Valid_Pixels", validPixelCount }, new Object[] { "Fraction_Valid", percentFilled } }; } else { totalPixels = new Object[][] { new Object[] { "Valid_Pixels", validPixelCount } }; } dataRows += totalPixels.length; Object[][] firstData = new Object[][] { new Object[] { "Mean", stx.getMean() } }; dataRows += firstData.length; Object[][] minMaxData = null; if (statisticsCriteriaPanel.includeMinMax()) { minMaxData = new Object[][] { new Object[] { "Minimum", stx.getMinimum() }, new Object[] { "Maximum", stx.getMaximum() } }; dataRows += minMaxData.length; } Object[] medianObject = null; if (statisticsCriteriaPanel.includeMedian()) { medianObject = new Object[] { "Median", stx.getMedianRaster() }; dataRows++; } Object[][] secondData = new Object[][] { new Object[] { "Standard_Deviation", stx.getStandardDeviation() }, new Object[] { "Variance", getVariance(stx) }, new Object[] { "Coefficient_of_Variation", getCoefficientOfVariation(stx) } }; dataRows += secondData.length; Object[][] binningInfo = null; if (statisticsCriteriaPanel.isIncludeBinningInfo()) { binningInfo = new Object[][] { new Object[] { "Total_Bins", histogram.getNumBins()[0] }, new Object[] { "Bin_Width", getBinSize(histogram) }, new Object[] { "Bin_Min", histogram.getLowValue(0) }, new Object[] { "Bin_Max", histogram.getHighValue(0) } }; dataRows += binningInfo.length; } Object[][] histogramStats = null; if (statisticsCriteriaPanel.includeHistogramStats()) { if (statisticsCriteriaPanel.isLogMode()) { histogramStats = new Object[][] { new Object[] { "Mean(LogBinned)", Math.pow(10, histogram.getMean()[0]) }, new Object[] { "Median(LogBinned)", Math.pow(10, stx.getMedian()) }, new Object[] { "StandardDeviation(LogBinned)", Math.pow(10, histogram.getStandardDeviation()[0]) } }; } else { histogramStats = new Object[][] { new Object[] { "Mean(Binned)", histogram.getMean()[0] }, new Object[] { "Median(Binned)", stx.getMedian() }, new Object[] { "StandardDeviation(Binned)", histogram.getStandardDeviation()[0] } }; } dataRows += histogramStats.length; } Object[][] percentData = new Object[statisticsCriteriaPanel.getPercentThresholdsList().size()][]; for (int i = 0; i < statisticsCriteriaPanel.getPercentThresholdsList().size(); i++) { int value = statisticsCriteriaPanel.getPercentThresholdsList().get(i); double percent = value / 100.0; String percentString = Integer.toString(value); Object[] pTileThreshold; if (statisticsCriteriaPanel.isLogMode()) { pTileThreshold = new Object[] { percentString + "%Threshold(Log)", Math.pow(10, histogram.getPTileThreshold(percent)[0]) }; } else { pTileThreshold = new Object[] { percentString + "%Threshold", histogram.getPTileThreshold(percent)[0] }; } percentData[i] = pTileThreshold; } dataRows += percentData.length; Object[][] tableData = new Object[dataRows][]; int tableDataIdx = 0; if (totalPixels != null) { for (int i = 0; i < totalPixels.length; i++) { tableData[tableDataIdx] = totalPixels[i]; tableDataIdx++; } } if (firstData != null) { for (int i = 0; i < firstData.length; i++) { tableData[tableDataIdx] = firstData[i]; tableDataIdx++; } } if (medianObject != null) { tableData[tableDataIdx] = medianObject; tableDataIdx++; } if (minMaxData != null) { for (int i = 0; i < minMaxData.length; i++) { tableData[tableDataIdx] = minMaxData[i]; tableDataIdx++; } } if (secondData != null) { for (int i = 0; i < secondData.length; i++) { tableData[tableDataIdx] = secondData[i]; tableDataIdx++; } } if (binningInfo != null) { for (int i = 0; i < binningInfo.length; i++) { tableData[tableDataIdx] = binningInfo[i]; tableDataIdx++; } } if (histogramStats != null) { for (int i = 0; i < histogramStats.length; i++) { tableData[tableDataIdx] = histogramStats[i]; tableDataIdx++; } } if (percentData != null) { for (int i = 0; i < percentData.length; i++) { tableData[tableDataIdx] = percentData[i]; tableDataIdx++; } } numStxFields = tableData.length; int fieldIdx = 0; // Initialize indices if (stxIdx == 0) { primaryStatisticsFieldsHashMap.put(PrimaryStatisticsFields.FileRefNum, fieldIdx); fieldIdx++; primaryStatisticsFieldsHashMap.put(PrimaryStatisticsFields.BandName, fieldIdx); fieldIdx++; primaryStatisticsFieldsHashMap.put(PrimaryStatisticsFields.MaskName, fieldIdx); fieldIdx++; primaryStatisticsFieldsHashMap.put(PrimaryStatisticsFields.QualityMaskName, fieldIdx); fieldIdx++; stxFieldsStartIdx = fieldIdx; fieldIdx += numStxFields; stxFieldsEndIdx = fieldIdx - 1; if (includeBandMetaData) { if (includeColumnBreaks) { metaDataFieldsHashMap.put(MetaDataFields.BandMetaDataBreak, fieldIdx); fieldIdx++; } metaDataFieldsHashMap.put(MetaDataFields.BandName, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.BandUnit, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.BandValidExpression, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.BandDescription, fieldIdx); fieldIdx++; } if (includeMaskMetaData) { if (includeColumnBreaks) { metaDataFieldsHashMap.put(MetaDataFields.RegionalMaskMetaDataBreak, fieldIdx); fieldIdx++; } metaDataFieldsHashMap.put(MetaDataFields.RegionalMaskName, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.RegionalMaskDescription, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.RegionalMaskExpression, fieldIdx); fieldIdx++; if (includeColumnBreaks) { metaDataFieldsHashMap.put(MetaDataFields.QualityMaskMetaDataBreak, fieldIdx); fieldIdx++; } metaDataFieldsHashMap.put(MetaDataFields.QualityMaskName, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.QualityMaskDescription, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.QualityMaskExpression, fieldIdx); fieldIdx++; } if (includeTimeMetaData || isIncludeTimeSeriesMetaData) { if (includeColumnBreaks) { metaDataFieldsHashMap.put(MetaDataFields.TimeMetaDataBreak, fieldIdx); fieldIdx++; } if (includeTimeMetaData) { metaDataFieldsHashMap.put(MetaDataFields.StartDate, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.StartTime, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.EndDate, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.EndTime, fieldIdx); fieldIdx++; } if (isIncludeTimeSeriesMetaData) { metaDataFieldsHashMap.put(MetaDataFields.TimeSeriesDate, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.TimeSeriesTime, fieldIdx); fieldIdx++; } } if (includeFileMetaData) { if (includeColumnBreaks) { metaDataFieldsHashMap.put(MetaDataFields.FileMetaDataBreak, fieldIdx); fieldIdx++; } metaDataFieldsHashMap.put(MetaDataFields.FileName, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.FileType, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.FileFormat, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.FileWidth, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.FileHeight, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.Sensor, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.Platform, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.Resolution, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.DayNight, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.Orbit, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.ProcessingVersion, fieldIdx); fieldIdx++; metaDataFieldsHashMap.put(MetaDataFields.Projection, fieldIdx); fieldIdx++; } if (includeProjectionParameters) { metaDataFieldsHashMap.put(MetaDataFields.ProjectionParameters, fieldIdx); fieldIdx++; } } if (statsSpreadsheet == null) { statsSpreadsheet = new Object[numStxRegions + 2][fieldIdx]; // add 1 row to account for the header and 1 more empty row because JTable for some reason displays // only half of the last row when row count is large } String startDateString = ""; String startTimeString = ""; String endDateString = ""; String endTimeString = ""; if (includeTimeMetaData) { ProductData.UTC startDateTimeCorrected; ProductData.UTC endDateTimeCorrected; // correct time (invert start and end time if end time later than start time if (getProduct().getStartTime() != null && getProduct().getEndTime() != null) { if (getProduct().getStartTime().getMJD() <= getProduct().getEndTime().getMJD()) { startDateTimeCorrected = getProduct().getStartTime(); endDateTimeCorrected = getProduct().getEndTime(); } else { startDateTimeCorrected = getProduct().getEndTime(); endDateTimeCorrected = getProduct().getStartTime(); } if (startDateTimeCorrected != null) { String[] startDateTimeStringArray = startDateTimeCorrected.toString().split(" "); if (startDateTimeStringArray.length >= 2) { startDateString = startDateTimeStringArray[0].trim(); startTimeString = startDateTimeStringArray[1].trim(); } } if (endDateTimeCorrected != null) { String[] endDateTimeStringArray = endDateTimeCorrected.toString().split(" "); if (endDateTimeStringArray.length >= 2) { endDateString = endDateTimeStringArray[0].trim(); endTimeString = endDateTimeStringArray[1].trim(); } } } } String timeSeriesDate = ""; String timeSeriesTime = ""; if (isIncludeTimeSeriesMetaData) { String bandName = raster.getName(); String productDateTime = convertBandNameToProductTime(bandName); if (productDateTime != null) { String[] endDateTimeStringArray = productDateTime.split(" "); if (endDateTimeStringArray.length >= 2) { timeSeriesDate = endDateTimeStringArray[0].trim(); timeSeriesTime = endDateTimeStringArray[1].trim(); } } } String maskName = ""; String maskDescription = ""; String maskExpression = ""; if (regionalMask != null) { maskName = regionalMask.getName(); maskDescription = regionalMask.getDescription(); maskExpression = regionalMask.getImageConfig().getValue("expression"); } String qualityMaskName = ""; String qualityMaskDescription = ""; String qualityMaskExpression = ""; if (qualityMask != null) { qualityMaskName = qualityMask.getName(); qualityMaskDescription = qualityMask.getDescription(); qualityMaskExpression = qualityMask.getImageConfig().getValue("expression"); } addFieldToSpreadsheet(row, PrimaryStatisticsFields.FileRefNum, getProduct().getRefNo()); addFieldToSpreadsheet(row, PrimaryStatisticsFields.BandName, raster.getName()); addFieldToSpreadsheet(row, PrimaryStatisticsFields.MaskName, maskName); addFieldToSpreadsheet(row, PrimaryStatisticsFields.QualityMaskName, qualityMaskName); addFieldToSpreadsheet(row, MetaDataFields.TimeMetaDataBreak, COLUMN_BREAK); addFieldToSpreadsheet(row, MetaDataFields.StartDate, startDateString); addFieldToSpreadsheet(row, MetaDataFields.StartTime, startTimeString); addFieldToSpreadsheet(row, MetaDataFields.EndDate, endDateString); addFieldToSpreadsheet(row, MetaDataFields.EndTime, endTimeString); addFieldToSpreadsheet(row, MetaDataFields.TimeSeriesDate, timeSeriesDate); addFieldToSpreadsheet(row, MetaDataFields.TimeSeriesTime, timeSeriesTime); addFieldToSpreadsheet(row, MetaDataFields.FileMetaDataBreak, COLUMN_BREAK); addFieldToSpreadsheet(row, MetaDataFields.FileName, getProduct().getName()); addFieldToSpreadsheet(row, MetaDataFields.FileType, getProduct().getProductType()); addFieldToSpreadsheet(row, MetaDataFields.FileWidth, getProduct().getSceneRasterWidth()); addFieldToSpreadsheet(row, MetaDataFields.FileFormat, getProductFormatName(getProduct())); addFieldToSpreadsheet(row, MetaDataFields.FileHeight, getProduct().getSceneRasterHeight()); addFieldToSpreadsheet(row, MetaDataFields.Sensor, ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_SENSOR_KEYS)); addFieldToSpreadsheet(row, MetaDataFields.Platform, ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_PLATFORM_KEYS)); addFieldToSpreadsheet(row, MetaDataFields.Resolution, ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_RESOLUTION_KEYS)); addFieldToSpreadsheet(row, MetaDataFields.DayNight, ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_DAY_NIGHT_KEYS)); addFieldToSpreadsheet(row, MetaDataFields.Orbit, ProductUtils.getMetaDataOrbit(getProduct())); addFieldToSpreadsheet(row, MetaDataFields.ProcessingVersion, ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_PROCESSING_VERSION_KEYS)); // Determine projection String projection = ""; String projectionParameters = ""; GeoCoding geo = getProduct().getGeoCoding(); // determine if using class CrsGeoCoding otherwise display class if (geo != null) { if (geo instanceof CrsGeoCoding) { projection = geo.getMapCRS().getName().toString() + "(obtained from CrsGeoCoding)"; projectionParameters = geo.getMapCRS().toString().replaceAll("\n", " ").replaceAll(" ", ""); } else if (geo.toString() != null) { String projectionFromMetaData = ProductUtils.getMetaData(getProduct(), ProductUtils.METADATA_POSSIBLE_PROJECTION_KEYS); if (projectionFromMetaData != null && projectionFromMetaData.length() > 0) { projection = projectionFromMetaData + "(obtained from MetaData)"; } else { projection = "unknown (" + geo.getClass().toString() + ")"; } } } addFieldToSpreadsheet(row, MetaDataFields.Projection, projection); addFieldToSpreadsheet(row, MetaDataFields.ProjectionParameters, projectionParameters); addFieldToSpreadsheet(row, MetaDataFields.BandMetaDataBreak, COLUMN_BREAK); addFieldToSpreadsheet(row, MetaDataFields.BandName, raster.getName()); addFieldToSpreadsheet(row, MetaDataFields.BandUnit, raster.getUnit()); addFieldToSpreadsheet(row, MetaDataFields.BandValidExpression, raster.getValidPixelExpression()); addFieldToSpreadsheet(row, MetaDataFields.BandDescription, raster.getDescription()); addFieldToSpreadsheet(row, MetaDataFields.RegionalMaskMetaDataBreak, COLUMN_BREAK); addFieldToSpreadsheet(row, MetaDataFields.RegionalMaskName, maskName); addFieldToSpreadsheet(row, MetaDataFields.RegionalMaskDescription, maskDescription); addFieldToSpreadsheet(row, MetaDataFields.RegionalMaskExpression, maskExpression); addFieldToSpreadsheet(row, MetaDataFields.QualityMaskMetaDataBreak, COLUMN_BREAK); addFieldToSpreadsheet(row, MetaDataFields.QualityMaskName, qualityMaskName); addFieldToSpreadsheet(row, MetaDataFields.QualityMaskDescription, qualityMaskDescription); addFieldToSpreadsheet(row, MetaDataFields.QualityMaskExpression, qualityMaskExpression); // Add Header first time through if (row <= 1) { int k = stxFieldsStartIdx; for (int i = 0; i < tableData.length; i++) { Object value = tableData[i][0]; if (k < statsSpreadsheet[0].length && k <= stxFieldsEndIdx) { statsSpreadsheet[0][k] = value; k++; } } } // account for header as added row if (row < statsSpreadsheet.length) { int k = stxFieldsStartIdx; for (int i = 0; i < tableData.length; i++) { Object value = tableData[i][1]; if (k < statsSpreadsheet[row].length && k <= stxFieldsEndIdx) { statsSpreadsheet[row][k] = value; k++; } } } int numPlots = 0; if (statisticsCriteriaPanel.showPercentPlots()) { numPlots++; } if (statisticsCriteriaPanel.showHistogramPlots()) { numPlots++; } JPanel plotContainerPanel = null; if (numPlots > 0) { plotContainerPanel = new JPanel(new GridLayout(1, numPlots)); if (statisticsCriteriaPanel.showHistogramPlots()) { plotContainerPanel.add(histogramPanel); } if (statisticsCriteriaPanel.showPercentPlots()) { plotContainerPanel.add(percentilePanel); } } TableModel tableModel = new DefaultTableModel(tableData, new String[] { "Name", "Value" }) { @Override public Class<?> getColumnClass(int columnIndex) { return columnIndex == 0 ? String.class : Number.class; } @Override public boolean isCellEditable(int row, int column) { return false; } }; final JTable table = new JTable(tableModel); table.setDefaultRenderer(Number.class, new DefaultTableCellRenderer() { @Override public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) { final Component label = super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column); if (value instanceof Float || value instanceof Double) { setHorizontalTextPosition(RIGHT); setText(getFormattedValue((Number) value)); } return label; } private String getFormattedValue(Number value) { if (value.doubleValue() < 0.001 && value.doubleValue() > -0.001 && value.doubleValue() != 0.0) { return new DecimalFormat("0.####E0").format(value.doubleValue()); } String format = "%." + Integer.toString(statisticsCriteriaPanel.decimalPlaces()) + "f"; return String.format(format, value.doubleValue()); } }); table.addMouseListener(popupHandler); // TEST CODE generically preferred size of each column based on longest expected entry // fails a bit because decimal formatting is not captured // stub of code commented out in case we want to make it work // meanwhile longest entry is being used SEE below // int column0Length = 0; // int column1Length = 0; // FontMetrics fm = table.getFontMetrics(table.getFont()); // for (int rowIndex = 0; rowIndex < table.getRowCount(); rowIndex++) { // String test = table.getValueAt(rowIndex,0).toString(); // int currColumn0Length = fm.stringWidth(table.getValueAt(rowIndex,0).toString()); // if (currColumn0Length > column0Length) { // column0Length = currColumn0Length; // } // // String test2 = table.getValueAt(rowIndex,1).toString(); // int currColumn1Length = fm.stringWidth(table.getValueAt(rowIndex,1).toString()); // if (currColumn1Length > column1Length) { // column1Length = currColumn1Length; // } // } // Set preferred size of each column based on longest expected entry FontMetrics fm = table.getFontMetrics(table.getFont()); TableColumn column = null; int col1PreferredWidth = -1; if (statisticsCriteriaPanel.isLogMode()) { col1PreferredWidth = fm.stringWidth("StandardDeviation(LogBinned):") + 10; } else { col1PreferredWidth = fm.stringWidth("StandardDeviation(Binned):") + 10; } // int col1PreferredWidth = fm.stringWidth("wwwwwwwwwwwwwwwwwwwwwwwwww"); int col2PreferredWidth = fm.stringWidth("1234567890") + 10; int tablePreferredWidth = col1PreferredWidth + col2PreferredWidth; for (int i = 0; i < 2; i++) { column = table.getColumnModel().getColumn(i); if (i == 0) { column.setPreferredWidth(col1PreferredWidth); column.setMaxWidth(col1PreferredWidth); } else { column.setPreferredWidth(col2PreferredWidth); } } JPanel textContainerPanel = new JPanel(new BorderLayout(2, 2)); // textContainerPanel.setBackground(Color.WHITE); textContainerPanel.add(table, BorderLayout.CENTER); textContainerPanel.addMouseListener(popupHandler); JPanel statsPane = GridBagUtils.createPanel(); GridBagConstraints gbc = GridBagUtils.createConstraints(""); gbc.gridy = 0; gbc.fill = GridBagConstraints.BOTH; gbc.anchor = GridBagConstraints.NORTHWEST; gbc.weightx = 1; gbc.weighty = 1; Dimension dim = table.getPreferredSize(); table.setPreferredSize(new Dimension(tablePreferredWidth, dim.height)); statsPane.add(table, gbc); statsPane.setPreferredSize(new Dimension(tablePreferredWidth, dim.height)); JPanel plotsPane = null; if (plotContainerPanel != null) { plotsPane = GridBagUtils.createPanel(); plotsPane.setBackground(Color.WHITE); // plotsPane.setBorder(UIUtils.createGroupBorder(" ")); /*I18N*/ GridBagConstraints gbcPlots = GridBagUtils.createConstraints(""); gbcPlots.gridy = 0; if (statisticsCriteriaPanel.exactPlotSize()) { gbcPlots.fill = GridBagConstraints.NONE; } else { gbcPlots.fill = GridBagConstraints.BOTH; } gbcPlots.anchor = GridBagConstraints.NORTHWEST; gbcPlots.weightx = 0.5; gbcPlots.weighty = 1; plotsPane.add(plotContainerPanel, gbcPlots); } JPanel mainPane = GridBagUtils.createPanel(); mainPane.setBorder(UIUtils.createGroupBorder(getSubPanelTitle(regionalMask, qualityMask, raster))); /*I18N*/ GridBagConstraints gbcMain = GridBagUtils.createConstraints(""); gbcMain.gridx = 0; gbcMain.gridy = 0; gbcMain.anchor = GridBagConstraints.NORTHWEST; if (plotsPane != null) { gbcMain.fill = GridBagConstraints.VERTICAL; gbcMain.weightx = 0; } else { gbcMain.fill = GridBagConstraints.BOTH; gbcMain.weightx = 1; } if (statisticsCriteriaPanel.showStatsList()) { gbcMain.weighty = 1; mainPane.add(statsPane, gbcMain); gbcMain.gridx++; } gbcMain.weightx = 1; gbcMain.weighty = 1; gbcMain.fill = GridBagConstraints.BOTH; if (plotsPane != null) { mainPane.add(plotsPane, gbcMain); } return mainPane; }