List of usage examples for org.jfree.data.xy XYSeries getMinX
public double getMinX()
From source file:org.gephi.statistics.plugin.ChartUtils.java
public static void scaleChart(JFreeChart chart, XYSeries dSeries, boolean normalized) { XYPlot plot = (XYPlot) chart.getPlot(); ValueAxis domainAxis = plot.getDomainAxis(); domainAxis.setLowerMargin(1.0);/*from w w w .ja v a 2s.c om*/ domainAxis.setUpperMargin(1.0); domainAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); if (normalized) { domainAxis.setRange(-0.05, 1.05); } else { domainAxis.setRange(dSeries.getMinX() - 1, dSeries.getMaxX() + 1); } NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setRange(-0.1 * Math.sqrt(dSeries.getMaxY()), dSeries.getMaxY() + 0.1 * Math.sqrt(dSeries.getMaxY())); }
From source file:com.ivli.roim.controls.DomainMarker.java
public DomainMarker(XYSeries aSet) { this((aSet.getMaxX() - aSet.getMinX()) / 2., aSet); }
From source file:edu.ucsf.valelab.spotintensityanalysis.plot.PlotUtils.java
/** * Create a frame with a plot of the data given in XYSeries overwrite any * previously created frame with the same title * /*from ww w . j a v a2 s.c o m*/ * @param title shown in the top of the plot * @param data array with data series to be plotted * @param xTitle Title of the X axis * @param yTitle Title of the Y axis * @param showShapes whether or not to draw shapes at the data points * @param annotation to be shown in plot * @return Frame that displays the data */ public Frame plotDataN(String title, XYSeries[] data, String xTitle, String yTitle, boolean[] showShapes, String annotation) { // JFreeChart code XYSeriesCollection dataset = new XYSeriesCollection(); // calculate min and max to scale the graph double minX, minY, maxX, maxY; minX = data[0].getMinX(); minY = data[0].getMinY(); maxX = data[0].getMaxX(); maxY = data[0].getMaxY(); for (XYSeries d : data) { dataset.addSeries(d); if (d.getMinX() < minX) { minX = d.getMinX(); } if (d.getMaxX() > maxX) { maxX = d.getMaxX(); } if (d.getMinY() < minY) { minY = d.getMinY(); } if (d.getMaxY() > maxY) { maxY = d.getMaxY(); } } JFreeChart chart = ChartFactory.createScatterPlot(title, // Title xTitle, // x-axis Label yTitle, // y-axis Label dataset, // Dataset PlotOrientation.VERTICAL, // Plot Orientation true, // Show Legend true, // Use tooltips false // Configure chart to generate URLs? ); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); for (int i = 0; i < data.length; i++) { renderer.setSeriesFillPaint(i, Color.white); renderer.setSeriesLinesVisible(i, true); } renderer.setSeriesPaint(0, Color.blue); Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(0, circle, false); if (data.length > 1) { renderer.setSeriesPaint(1, Color.red); Shape square = new Rectangle2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(1, square, false); } if (data.length > 2) { renderer.setSeriesPaint(2, Color.darkGray); Shape rect = new Rectangle2D.Float(-2.0f, -1.0f, 4.0f, 2.0f); renderer.setSeriesShape(2, rect, false); } if (data.length > 3) { renderer.setSeriesPaint(3, Color.magenta); Shape rect = new Rectangle2D.Float(-1.0f, -2.0f, 2.0f, 4.0f); renderer.setSeriesShape(3, rect, false); } for (int i = 0; i < data.length; i++) { if (showShapes.length > i && !showShapes[i]) { renderer.setSeriesShapesVisible(i, false); } } // place annotation at 80 % of max X, maxY XYAnnotation an = new XYTextAnnotation(annotation, maxX - 0.2 * (maxX - minX), maxY); plot.addAnnotation(an); renderer.setUseFillPaint(true); if (graphFrame_ == null) graphFrame_ = new MyChartFrame(title, chart); else graphFrame_.getChartPanel().setChart(chart); graphFrame_.getChartPanel().setMouseWheelEnabled(true); graphFrame_.pack(); final MyChartFrame privateFrame = graphFrame_; graphFrame_.addWindowListener(new WindowAdapter() { @Override public void windowClosing(WindowEvent arg0) { privateFrame.dispose(); } }); graphFrame_.setVisible(true); return graphFrame_; }
From source file:edu.ucsf.valelab.saim.plot.PlotUtils.java
/** * Create a frame with a plot of the data given in XYSeries overwrite any * previously created frame with the same title * /*from ww w .j a v a2 s.com*/ * @param title shown in the top of the plot * @param data array with data series to be plotted * @param xTitle Title of the X axis * @param yTitle Title of the Y axis * @param showShapes whether or not to draw shapes at the data points * @param annotation to be shown in plot * @return Frame that displays the data */ public Frame plotDataN(String title, XYSeries[] data, String xTitle, String yTitle, boolean[] showShapes, String annotation) { // Close existing frames // Frame[] gfs = ChartFrame.getFrames(); // for (Frame f : gfs) { //if (f.getTitle().equals(title)) { // f.dispose(); //} // } // JFreeChart code XYSeriesCollection dataset = new XYSeriesCollection(); // calculate min and max to scale the graph double minX, minY, maxX, maxY; minX = data[0].getMinX(); minY = data[0].getMinY(); maxX = data[0].getMaxX(); maxY = data[0].getMaxY(); for (XYSeries d : data) { dataset.addSeries(d); if (d.getMinX() < minX) { minX = d.getMinX(); } if (d.getMaxX() > maxX) { maxX = d.getMaxX(); } if (d.getMinY() < minY) { minY = d.getMinY(); } if (d.getMaxY() > maxY) { maxY = d.getMaxY(); } } JFreeChart chart = ChartFactory.createScatterPlot(title, // Title xTitle, // x-axis Label yTitle, // y-axis Label dataset, // Dataset PlotOrientation.VERTICAL, // Plot Orientation true, // Show Legend true, // Use tooltips false // Configure chart to generate URLs? ); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); for (int i = 0; i < data.length; i++) { renderer.setSeriesFillPaint(i, Color.white); renderer.setSeriesLinesVisible(i, true); } renderer.setSeriesPaint(0, Color.blue); Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(0, circle, false); if (data.length > 1) { renderer.setSeriesPaint(1, Color.red); Shape square = new Rectangle2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(1, square, false); } if (data.length > 2) { renderer.setSeriesPaint(2, Color.darkGray); Shape rect = new Rectangle2D.Float(-2.0f, -1.0f, 4.0f, 2.0f); renderer.setSeriesShape(2, rect, false); } if (data.length > 3) { renderer.setSeriesPaint(3, Color.magenta); Shape rect = new Rectangle2D.Float(-1.0f, -2.0f, 2.0f, 4.0f); renderer.setSeriesShape(3, rect, false); } for (int i = 0; i < data.length; i++) { if (showShapes.length > i && !showShapes[i]) { renderer.setSeriesShapesVisible(i, false); } } // place annotation at 80 % of max X, maxY XYAnnotation an = new XYTextAnnotation(annotation, maxX - 0.2 * (maxX - minX), maxY); plot.addAnnotation(an); renderer.setUseFillPaint(true); final MyChartFrame graphFrame = new MyChartFrame(title, chart); graphFrame.getChartPanel().setMouseWheelEnabled(true); graphFrame.pack(); graphFrame.addWindowListener(new WindowAdapter() { @Override public void windowClosing(WindowEvent arg0) { graphFrame.dispose(); } }); graphFrame.setVisible(true); return graphFrame; }
From source file:org.micromanager.saim.plot.PlotUtils.java
/** * Create a frame with a plot of the data given in XYSeries overwrite any * previously created frame with the same title * // ww w. ja v a 2s . c o m * @param title shown in the top of the plot * @param data array with data series to be plotted * @param xTitle Title of the X axis * @param yTitle Title of the Y axis * @param showShapes whether or not to draw shapes at the data points * @param annotation to be shown in plot * @return Frame that displays the data */ public Frame plotDataN(String title, XYSeries[] data, String xTitle, String yTitle, boolean[] showShapes, String annotation) { //Close existing frames Frame[] gfs = ChartFrame.getFrames(); for (Frame f : gfs) { if (f.getTitle().equals(title)) { f.dispose(); } } // JFreeChart code XYSeriesCollection dataset = new XYSeriesCollection(); // calculate min and max to scale the graph double minX, minY, maxX, maxY; minX = data[0].getMinX(); minY = data[0].getMinY(); maxX = data[0].getMaxX(); maxY = data[0].getMaxY(); for (XYSeries d : data) { dataset.addSeries(d); if (d.getMinX() < minX) { minX = d.getMinX(); } if (d.getMaxX() > maxX) { maxX = d.getMaxX(); } if (d.getMinY() < minY) { minY = d.getMinY(); } if (d.getMaxY() > maxY) { maxY = d.getMaxY(); } } JFreeChart chart = ChartFactory.createScatterPlot(title, // Title xTitle, // x-axis Label yTitle, // y-axis Label dataset, // Dataset PlotOrientation.VERTICAL, // Plot Orientation true, // Show Legend true, // Use tooltips false // Configure chart to generate URLs? ); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); for (int i = 0; i < data.length; i++) { renderer.setSeriesFillPaint(i, Color.white); renderer.setSeriesLinesVisible(i, true); } renderer.setSeriesPaint(0, Color.blue); Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(0, circle, false); if (data.length > 1) { renderer.setSeriesPaint(1, Color.red); Shape square = new Rectangle2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(1, square, false); } if (data.length > 2) { renderer.setSeriesPaint(2, Color.darkGray); Shape rect = new Rectangle2D.Float(-2.0f, -1.0f, 4.0f, 2.0f); renderer.setSeriesShape(2, rect, false); } if (data.length > 3) { renderer.setSeriesPaint(3, Color.magenta); Shape rect = new Rectangle2D.Float(-1.0f, -2.0f, 2.0f, 4.0f); renderer.setSeriesShape(3, rect, false); } for (int i = 0; i < data.length; i++) { if (showShapes.length > i && !showShapes[i]) { renderer.setSeriesShapesVisible(i, false); } } // place annotation at 80 % of max X, maxY XYAnnotation an = new XYTextAnnotation(annotation, maxX - 0.2 * (maxX - minX), maxY); plot.addAnnotation(an); renderer.setUseFillPaint(true); final MyChartFrame graphFrame = new MyChartFrame(title, chart); graphFrame.getChartPanel().setMouseWheelEnabled(true); graphFrame.pack(); graphFrame.addWindowListener(new WindowAdapter() { @Override public void windowClosing(WindowEvent arg0) { graphFrame.dispose(); } }); graphFrame.setVisible(true); return graphFrame; }
From source file:org.micromanager.asidispim.Utils.PlotUtils.java
/** * Create a frame with a plot of the data given in XYSeries overwrite any * previously created frame with the same title * /*from w w w . ja va 2s . c o m*/ * @param title shown in the top of the plot * @param data array with data series to be plotted * @param xTitle Title of the X axis * @param yTitle Title of the Y axis * @param showShapes whether or not to draw shapes at the data points * @param annotation to be shown in plot * @return Frame that displays the data */ public Frame plotDataN(String title, XYSeries[] data, String xTitle, String yTitle, boolean[] showShapes, String annotation) { // if we already have a plot open with this title, close it, but remember // its position Frame[] gfs = ChartFrame.getFrames(); for (Frame f : gfs) { if (f.getTitle().equals(title)) { f.dispose(); } } // JFreeChart code XYSeriesCollection dataset = new XYSeriesCollection(); // calculate min and max to scale the graph double minX, minY, maxX, maxY; minX = data[0].getMinX(); minY = data[0].getMinY(); maxX = data[0].getMaxX(); maxY = data[0].getMaxY(); for (XYSeries d : data) { dataset.addSeries(d); if (d.getMinX() < minX) { minX = d.getMinX(); } if (d.getMaxX() > maxX) { maxX = d.getMaxX(); } if (d.getMinY() < minY) { minY = d.getMinY(); } if (d.getMaxY() > maxY) { maxY = d.getMaxY(); } } JFreeChart chart = ChartFactory.createScatterPlot(title, // Title xTitle, // x-axis Label yTitle, // y-axis Label dataset, // Dataset PlotOrientation.VERTICAL, // Plot Orientation false, // Show Legend true, // Use tooltips false // Configure chart to generate URLs? ); XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); for (int i = 0; i < data.length; i++) { renderer.setSeriesFillPaint(i, Color.white); renderer.setSeriesLinesVisible(i, true); } renderer.setSeriesPaint(0, Color.blue); Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(0, circle, false); if (data.length > 1) { renderer.setSeriesPaint(1, Color.red); Shape square = new Rectangle2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(1, square, false); } if (data.length > 2) { renderer.setSeriesPaint(2, Color.darkGray); Shape rect = new Rectangle2D.Float(-2.0f, -1.0f, 4.0f, 2.0f); renderer.setSeriesShape(2, rect, false); } if (data.length > 3) { renderer.setSeriesPaint(3, Color.magenta); Shape rect = new Rectangle2D.Float(-1.0f, -2.0f, 2.0f, 4.0f); renderer.setSeriesShape(3, rect, false); } for (int i = 0; i < data.length; i++) { if (showShapes.length > i && !showShapes[i]) { renderer.setSeriesShapesVisible(i, false); } } XYAnnotation an = new XYTextAnnotation(annotation, maxX - 0.01, maxY); plot.addAnnotation(an); renderer.setUseFillPaint(true); final MyChartFrame graphFrame = new MyChartFrame(title, chart); graphFrame.getChartPanel().setMouseWheelEnabled(true); graphFrame.pack(); graphFrame.addWindowListener(new WindowAdapter() { @Override public void windowClosing(WindowEvent arg0) { graphFrame.dispose(); } }); graphFrame.setVisible(true); return graphFrame; }
From source file:be.ugent.maf.cellmissy.gui.controller.analysis.doseresponse.DoseResponseController.java
/** * Create a dose-response chart containing experimental data, simulated data * and an annotated R value./*w w w. jav a 2 s. c o m*/ * * @param dataToPlot The experimental data on which the fit was performed * @param analysisGroup The analysis group * @param normalized Whether the responses are normalized * @return */ public JFreeChart createDoseResponseChart(List<DoseResponsePair> dataToPlot, DoseResponseAnalysisGroup analysisGroup, boolean normalized) { // setup scatter data of experimental concentrations/slopes, renderer and axis XYSeriesCollection experimentalData = new XYSeriesCollection(); XYSeries scatterXYSeries = JFreeChartUtils.generateXYSeries(AnalysisUtils.generateXValues(dataToPlot), AnalysisUtils.generateYValues(dataToPlot)); scatterXYSeries.setKey("Experimental data"); experimentalData.addSeries(scatterXYSeries); // compute how far the simulated data and axes should range: from the lowest and highest dose continue half of the range between these two List<Double> extremes = new ArrayList<>(); Double range = Math.abs(scatterXYSeries.getMaxX() - scatterXYSeries.getMinX()); extremes.add(scatterXYSeries.getMinX() - (range / 2)); extremes.add(scatterXYSeries.getMaxX() + (range / 2)); // Create the simulated line data, renderer, and axis XYSeriesCollection fitting = new XYSeriesCollection(); // create xy series of simulated data from the parameters from the fitting SigmoidFittingResultsHolder resultsHolder = analysisGroup.getDoseResponseAnalysisResults() .getFittingResults(normalized); XYSeries fittingData = simulateData(resultsHolder, extremes); fittingData.setKey("Fitting"); fitting.addSeries(fittingData); XYPlot plot = JFreeChartUtils.setupDoseResponseDatasets(experimentalData, fitting, getPlotAxesNames(normalized), extremes); // show the r squared value, put the value at a certain place between the min and max dose double xPlace = extremes.get(1) - range; double yPlace = scatterXYSeries.getMinY() + ((scatterXYSeries.getMaxY() - scatterXYSeries.getMinY()) / 4); plot.addAnnotation(new XYTextAnnotation( "R2=" + AnalysisUtils.roundThreeDecimals(AnalysisUtils.computeRSquared(dataToPlot, resultsHolder)), xPlace, yPlace)); // Create the chart with the plot and no legend JFreeChart chart = new JFreeChart("Title", JFreeChart.DEFAULT_TITLE_FONT, plot, false); String title = ""; if (normalized) { title = "Normalized fitting"; } else { title = "Initial fitting"; } JFreeChartUtils.setupDoseResponseChart(chart, title); return chart; }
From source file:org.jfree.data.xy.XYSeriesCollection.java
/** * Returns the minimum x-value in the dataset. * * @param includeInterval a flag that determines whether or not the * x-interval is taken into account. * * @return The minimum value.//from ww w .ja v a2 s.co m */ @Override public double getDomainLowerBound(boolean includeInterval) { if (includeInterval) { return this.intervalDelegate.getDomainLowerBound(includeInterval); } double result = Double.NaN; int seriesCount = getSeriesCount(); for (int s = 0; s < seriesCount; s++) { XYSeries series = getSeries(s); double lowX = series.getMinX(); if (Double.isNaN(result)) { result = lowX; } else { if (!Double.isNaN(lowX)) { result = Math.min(result, lowX); } } } return result; }
From source file:org.jfree.data.xy.XYSeriesCollection.java
/** * Returns the range of the values in this dataset's domain. * * @param includeInterval a flag that determines whether or not the * x-interval is taken into account. * * @return The range (or <code>null</code> if the dataset contains no * values).//from ww w .ja v a 2s .c o m */ @Override public Range getDomainBounds(boolean includeInterval) { if (includeInterval) { return this.intervalDelegate.getDomainBounds(includeInterval); } else { double lower = Double.POSITIVE_INFINITY; double upper = Double.NEGATIVE_INFINITY; int seriesCount = getSeriesCount(); for (int s = 0; s < seriesCount; s++) { XYSeries series = getSeries(s); double minX = series.getMinX(); if (!Double.isNaN(minX)) { lower = Math.min(lower, minX); } double maxX = series.getMaxX(); if (!Double.isNaN(maxX)) { upper = Math.max(upper, maxX); } } if (lower > upper) { return null; } else { return new Range(lower, upper); } } }
From source file:com.imaging100x.tracker.TrackerUtils.java
/** * Create a frame with a plot of the data given in XYSeries *///from ww w . j a va2s. co m public static void plotData(String title, final XYSeries data, String xTitle, String yTitle, int xLocation, int yLocation) { // JFreeChart code XYSeriesCollection dataset = new XYSeriesCollection(); dataset.addSeries(data); JFreeChart chart = ChartFactory.createScatterPlot(title, // Title xTitle, // x-axis Label yTitle, // y-axis Label dataset, // Dataset PlotOrientation.VERTICAL, // Plot Orientation false, // Show Legend true, // Use tooltips false // Configure chart to generate URLs? ); final XYPlot plot = (XYPlot) chart.getPlot(); plot.setBackgroundPaint(Color.white); plot.setRangeGridlinePaint(Color.lightGray); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); renderer.setSeriesPaint(0, Color.black); renderer.setSeriesFillPaint(0, Color.white); renderer.setSeriesLinesVisible(0, true); Shape circle = new Ellipse2D.Float(-2.0f, -2.0f, 4.0f, 4.0f); renderer.setSeriesShape(0, circle, false); renderer.setUseFillPaint(true); ChartFrame graphFrame = new ChartFrame(title, chart); graphFrame.getChartPanel().setMouseWheelEnabled(true); graphFrame.setPreferredSize(new Dimension(SIZE, SIZE)); graphFrame.setResizable(true); graphFrame.pack(); graphFrame.setLocation(xLocation, yLocation); graphFrame.setVisible(true); dataset.addChangeListener(new DatasetChangeListener() { public void datasetChanged(DatasetChangeEvent dce) { double xRange = data.getMaxX() - data.getMinX(); double yRange = data.getMaxY() - data.getMinY(); double xAvg = (data.getMaxX() + data.getMinX()) / 2; double yAvg = (data.getMaxY() + data.getMinY()) / 2; double range = xRange; if (yRange > range) { range = yRange; } double offset = 0.55 * range; plot.getDomainAxis().setRange(xAvg - offset, xAvg + offset); plot.getRangeAxis().setRange(yAvg - offset, yAvg + offset); } }); }