Example usage for org.springframework.batch.test JobLauncherTestUtils JobLauncherTestUtils

Introduction

In this page you can find the example usage for org.springframework.batch.test JobLauncherTestUtils JobLauncherTestUtils.

Prototype

JobLauncherTestUtils

Source Link

Usage

From source file:org.glycoinfo.batch.glyconvert.wurcs.WurcsConvertBatchTest.java

@Bean
public JobLauncherTestUtils jobLauncherTestUtils() {
    return new JobLauncherTestUtils();
}

From source file:org.cbioportal.annotation.pipeline.TestConfiguration.java

@Bean
public JobLauncherTestUtils jobLauncherTestUtils() {
    JobLauncherTestUtils jobLauncherTestUtils = new JobLauncherTestUtils();
    jobLauncherTestUtils.setJob(annotationJob());
    return new JobLauncherTestUtils();
}

From source file:uk.ac.ebi.eva.pipeline.jobs.steps.VariantLoaderStepTest.java

@Before
public void setUp() throws Exception {
    jobOptions.loadArgs();/*from   w w w.j  a  v  a 2  s . c om*/
    jobLauncherTestUtils = new JobLauncherTestUtils();
    jobLauncherTestUtils.setJob(job);
    jobLauncherTestUtils.setJobLauncher(jobLauncher);
    jobLauncherTestUtils.setJobRepository(jobRepository);

    input = jobOptions.getPipelineOptions().getString("input.vcf");
    outputDir = jobOptions.getPipelineOptions().getString("output.dir");
    dbName = jobOptions.getPipelineOptions().getString("db.name");
}

From source file:uk.ac.ebi.eva.pipeline.jobs.AggregatedVcfJobTest.java

@Before
public void setUp() throws Exception {
    jobOptions.loadArgs();//from  ww  w  .j a  v a2  s . c o m

    jobLauncherTestUtils = new JobLauncherTestUtils();
    jobLauncherTestUtils.setJob(job);
    jobLauncherTestUtils.setJobLauncher(jobLauncher);
    jobLauncherTestUtils.setJobRepository(jobRepository);

    input = jobOptions.getPipelineOptions().getString("input.vcf");
    outputDir = jobOptions.getPipelineOptions().getString("output.dir");
    compressExtension = jobOptions.getPipelineOptions().getString("compressExtension");
    dbName = jobOptions.getPipelineOptions().getString("db.name");

    String inputFile = AggregatedVcfJobTest.class.getResource(input).getFile();
    jobOptions.getPipelineOptions().put("input.vcf", inputFile);
}

From source file:uk.ac.ebi.eva.pipeline.jobs.GenotypedVcfJobTest.java

@Before
public void setUp() throws Exception {
    jobOptions.loadArgs();// ww w. ja va 2 s  .co  m
    jobLauncherTestUtils = new JobLauncherTestUtils();
    jobLauncherTestUtils.setJob(job);
    jobLauncherTestUtils.setJobLauncher(jobLauncher);
    jobLauncherTestUtils.setJobRepository(jobRepository);

    input = jobOptions.getPipelineOptions().getString("input.vcf");
    outputDir = jobOptions.getPipelineOptions().getString("output.dir");
    compressExtension = jobOptions.getPipelineOptions().getString("compressExtension");
    dbName = jobOptions.getPipelineOptions().getString("db.name");
    vepInput = jobOptions.getPipelineOptions().getString("vep.input");
    vepOutput = jobOptions.getPipelineOptions().getString("vep.output");
    JobTestUtils.cleanDBs(dbName);
}

From source file:uk.ac.ebi.eva.pipeline.jobs.GenotypedVcfJobWorkflowTest.java

/**
 * JobLauncherTestUtils is initialized here because in GenotypedVcfJob there are two Job beans
 * in this way it is possible to specify the Job to run (and avoid NoUniqueBeanDefinitionException)
 * @throws Exception/*  w ww .j  av a2 s  .c om*/
 */
@Before
public void setUp() throws Exception {
    jobOptions.loadArgs();
    jobLauncherTestUtils = new JobLauncherTestUtils();
    jobLauncherTestUtils.setJob(job);
    jobLauncherTestUtils.setJobLauncher(jobLauncher);

    inputFileResouce = jobOptions.getPipelineOptions().getString("input.vcf");
    outputDir = jobOptions.getPipelineOptions().getString("output.dir");
    compressExtension = jobOptions.getPipelineOptions().getString("compressExtension");
    dbName = jobOptions.getPipelineOptions().getString("db.name");
    vepInput = jobOptions.getPipelineOptions().getString("vep.input");
    vepOutput = jobOptions.getPipelineOptions().getString("vep.output");
    JobTestUtils.cleanDBs(dbName);
}