Example usage for org.springframework.core.io Resource getFile

List of usage examples for org.springframework.core.io Resource getFile

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Introduction

In this page you can find the example usage for org.springframework.core.io Resource getFile.

Prototype

File getFile() throws IOException;

Source Link

Document

Return a File handle for this resource.

Usage

From source file:net.opentsdb.contrib.tsquare.support.TsWebApplicationContextInitializer.java

private TsdbConfigPropertySource loadTsdbConfig(final ResourcePatternResolver resolver) throws IOException {
    Resource configResource = null;

    for (final String location : OVERRIDE_SEARCH_LOCATIONS) {
        final String fullLoc = String.format("%s%s", location, CONFIG_FILENAME);
        log.debug("Searching for TSDB config in {}", fullLoc);

        final Resource res = resolver.getResource(fullLoc);
        if (res != null && res.exists()) {
            configResource = res;//w  w w  .j  a  va  2  s .co m
            log.info("Found TSDB config file using {} ", fullLoc);
            break;
        }
    }

    if (configResource == null) {
        return new TsdbConfigPropertySource(PROPERTY_SOURCE_NAME, new Config(true));
    } else if (configResource.isReadable()) {
        return new TsdbConfigPropertySource(PROPERTY_SOURCE_NAME,
                new Config(configResource.getFile().getAbsolutePath()));
    } else {
        throw new IllegalStateException("Unable to locate any TSDB config files!");
    }
}

From source file:fr.acxio.tools.agia.file.pdf.SplitPDFTasklet.java

private int splitFile(Resource sSourceResource, ChunkContext sChunkContext) throws Exception {
    Map<String, Object> aDestinationParams = new HashMap<String, Object>();
    aDestinationParams.put(ResourceFactoryConstants.PARAM_SOURCE, sSourceResource);
    aDestinationParams.put(ResourceFactoryConstants.PARAM_STEP_EXEC,
            ((sChunkContext != null) && (sChunkContext.getStepContext() != null))
                    ? sChunkContext.getStepContext().getStepExecution()
                    : null);/*from  w w w  .ja  va 2s.  co m*/
    Resource aDestination = null;
    int aResult = 0;

    PDDocumentContainer aDocumentContainer = null;

    try {
        aDocumentContainer = documentFactory.getDocument(sSourceResource.getFile());
        List<PDDocument> documents = aDocumentContainer.getParts();

        for (int i = 0; i < documents.size(); i++) {
            PDDocument doc = documents.get(i);
            // Output file factory
            int aTryCount = 10;
            do {
                aDestination = destinationFactory.getResource(aDestinationParams);
                aTryCount--;
            } while (!forceReplace && (aTryCount > 0) && (aDestination != null) && aDestination.exists());
            if ((aTryCount == 0) && !forceReplace) {
                throw new SplitPDFException("Cannot create a new destination filename");
            }
            if (aDestination != null) {
                if (aDestination.exists() && LOGGER.isWarnEnabled()) {
                    LOGGER.warn("Replacing {}", aDestination.getFile().getAbsolutePath());
                }
                writeDocument(doc, aDestination.getFile().getAbsolutePath());
                doc.close();
            } else {
                throw new SplitPDFException("No destination specified");
            }
            aResult++;
        }

    } finally {
        if (aDocumentContainer != null) {
            aDocumentContainer.close();
        }
    }
    return aResult;
}

From source file:com.apdplat.platform.compass.APDPlatLocalCompassBean.java

/**
 * Sets an optional connection based on Spring <code>Resource</code>
 * abstraction. Will be used if none is set as part of other possible
 * configuration of Compass connection.//from   w ww .  j  a v a2s  .  c om
 * <p/>
 * Will use <code>Resource#getFile</code> in order to get the absolute
 * path.
 */
public void setConnection(Resource connection) {
    //this.connection = connection;
    //compass
    //???
    Resource resource = new FileSystemResource(IndexManager.getIndexDir());
    this.connection = resource;
    try {
        log.info("apdplatcompass1 :? "
                + connection.getFile().getPath() + " ?? "
                + this.connection.getFile().getAbsolutePath() + "");
    } catch (IOException ex) {
        ex.printStackTrace();
    }
}

From source file:com.epam.catgenome.manager.ProjectManagerTest.java

@Test
@Transactional(propagation = Propagation.REQUIRED)
public void testLoadReferenceGenes() throws IOException {
    Resource resource = context.getResource("classpath:templates/genes_sorted.gtf");

    FeatureIndexedFileRegistrationRequest geneRequest = new FeatureIndexedFileRegistrationRequest();
    geneRequest.setReferenceId(referenceId);
    geneRequest.setName("genes");
    geneRequest.setPath(resource.getFile().getAbsolutePath());

    GeneFile geneFile = gffManager.registerGeneFile(geneRequest);

    referenceGenomeManager.updateReferenceGeneFileId(referenceId, geneFile.getId());

    geneRequest.setName("genes1");
    GeneFile geneFile1 = gffManager.registerGeneFile(geneRequest);

    Project project = new Project();
    project.setName(TEST_PROJECT_NAME);//  w w w .  j a  v a  2  s . co  m
    project.setItems(Arrays.asList(new ProjectItem(new BiologicalDataItem(testReference.getBioDataItemId())),
            new ProjectItem(geneFile1)));

    projectManager.saveProject(project);

    Project loadedProject = projectManager.loadProject(project.getId());
    Reference projectReference = (Reference) loadedProject.getItems().stream()
            .filter(i -> i.getBioDataItem().getFormat() == BiologicalDataItemFormat.REFERENCE)
            .map(ProjectItem::getBioDataItem).findFirst().get();

    GeneFile projectGeneFile = (GeneFile) loadedProject.getItems().stream()
            .filter(i -> i.getBioDataItem().getId().equals(geneFile1.getId())).map(ProjectItem::getBioDataItem)
            .findFirst().get();

    Assert.assertEquals(projectGeneFile.getPath(), projectReference.getGeneFile().getPath());
    Assert.assertEquals(projectGeneFile.getFormat(), projectReference.getGeneFile().getFormat());
    Assert.assertEquals(projectGeneFile.getType(), projectReference.getGeneFile().getType());
    Assert.assertEquals(projectGeneFile.getReferenceId(), projectReference.getGeneFile().getReferenceId());
    Assert.assertEquals(projectGeneFile.getCreatedBy(), projectReference.getGeneFile().getCreatedBy());
    Assert.assertNotNull(projectReference.getGeneFile().getId());
    Assert.assertNotNull(projectReference.getGeneFile().getName());
    Assert.assertNotNull(projectReference.getGeneFile().getCreatedDate());
}

From source file:com.epam.catgenome.manager.ProjectManagerTest.java

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW, rollbackFor = Exception.class)
public void testMoveProjectToParent() throws FeatureIndexException, InterruptedException, VcfReadingException,
        NoSuchAlgorithmException, IOException {
    Project parent = new Project();
    parent.setName("testParent");
    parent.setItems(Collections/*from ww w .  j  a va 2  s  . co m*/
            .singletonList(new ProjectItem(new BiologicalDataItem(testReference.getBioDataItemId()))));
    parent = projectManager.saveProject(parent);

    Project child1 = new Project();
    child1.setName("testChild1");
    child1.setItems(Collections
            .singletonList(new ProjectItem(new BiologicalDataItem(testReference.getBioDataItemId()))));
    child1 = projectManager.saveProject(child1, parent.getId());

    parent = projectManager.loadProject(parent.getId());
    Assert.assertFalse(parent.getNestedProjects().isEmpty());
    Assert.assertEquals(child1.getId(), parent.getNestedProjects().get(0).getId());

    Project child2 = new Project();
    child2.setName("testChild2");
    child2.setItems(Collections
            .singletonList(new ProjectItem(new BiologicalDataItem(testReference.getBioDataItemId()))));
    child2 = projectManager.saveProject(child2);
    projectManager.moveProjectToParent(child2.getId(), parent.getId());
    parent = projectManager.loadProject(parent.getId());

    Assert.assertEquals(parent.getNestedProjects().size(), 2);
    Assert.assertEquals(child1.getId(), parent.getNestedProjects().get(0).getId());
    Assert.assertEquals(child2.getId(), parent.getNestedProjects().get(1).getId());

    parent = projectManager.loadProject(parent.getId());
    Assert.assertEquals(parent.getNestedProjects().size(), 2);
    Assert.assertEquals(child1.getId(), parent.getNestedProjects().get(0).getId());
    Assert.assertEquals(child2.getId(), parent.getNestedProjects().get(1).getId());

    List<Project> topLevel = projectManager.loadTopLevelProjectsForCurrentUser();
    Assert.assertEquals(1, topLevel.size());

    // test loading tree
    Project child11 = new Project();
    child11.setName("tesChild11");
    child11.setItems(Collections
            .singletonList(new ProjectItem(new BiologicalDataItem(testReference.getBioDataItemId()))));
    projectManager.saveProject(child11, child1.getId());

    addVcfFileToProject(parent.getId(), "testVcf", TEST_VCF_FILE_PATH);

    Resource resource = context.getResource("classpath:templates/genes_sorted.gtf");

    FeatureIndexedFileRegistrationRequest request = new FeatureIndexedFileRegistrationRequest();
    request.setReferenceId(referenceId);
    request.setName("genes");
    request.setPath(resource.getFile().getAbsolutePath());

    GeneFile geneFile = gffManager.registerGeneFile(request);
    projectManager.addProjectItem(child1.getId(), geneFile.getBioDataItemId());

    referenceGenomeManager.updateReferenceGeneFileId(referenceId, geneFile.getId());
    projectManager.addProjectItem(parent.getId(), geneFile.getBioDataItemId());

    topLevel = projectManager.loadProjectTree(null);
    Assert.assertFalse(topLevel.isEmpty());
    Assert.assertFalse(topLevel.stream().anyMatch(p -> p.getNestedProjects().isEmpty()));
    Assert.assertTrue(topLevel.stream().anyMatch(p -> p.getItems().stream()
            .anyMatch(i -> i.getBioDataItem().getFormat() == BiologicalDataItemFormat.GENE)));
    Assert.assertFalse(topLevel.stream().anyMatch(p -> p.getItems().isEmpty()));
    Assert.assertFalse(topLevel.get(0).getNestedProjects().stream()
            .allMatch(p -> CollectionUtils.isEmpty(p.getNestedProjects())));
    Assert.assertFalse(
            topLevel.get(0).getNestedProjects().stream().allMatch(p -> CollectionUtils.isEmpty(p.getItems())));
}

From source file:de.ingrid.admin.Config.java

public Properties getOverrideProperties() throws IOException {
    Resource override = getOverrideConfigResource();
    InputStream is = new FileInputStream(override.getFile().getAbsolutePath());
    Properties props = new Properties();
    props.load(is);//from w w  w . java  2s .  c om
    return props;
}

From source file:com.epam.catgenome.manager.GffManagerTest.java

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW)
public void testDeleteGeneWithIndex() throws IOException, InterruptedException, FeatureIndexException,
        NoSuchAlgorithmException, GeneReadingException {
    Resource resource = context.getResource(GENES_SORTED_GTF_PATH);

    FeatureIndexedFileRegistrationRequest request = new FeatureIndexedFileRegistrationRequest();
    request.setReferenceId(referenceId);
    request.setPath(resource.getFile().getAbsolutePath());

    GeneFile geneFile = gffManager.registerGeneFile(request);
    Assert.assertNotNull(geneFile);/*  w ww .ja  v  a  2s.c  om*/
    Assert.assertNotNull(geneFile.getId());
    try {
        referenceGenomeManager.updateReferenceAnnotationFile(referenceId, geneFile.getBioDataItemId(), false);
        geneFileManager.deleteGeneFile(geneFile);
        //expected exception
    } catch (IllegalArgumentException e) {
        //remove file correctly as expected
        referenceGenomeManager.updateReferenceAnnotationFile(referenceId, geneFile.getBioDataItemId(), true);
        geneFileManager.deleteGeneFile(geneFile);
    }
}