Example usage for org.w3c.dom Element getParentNode

List of usage examples for org.w3c.dom Element getParentNode

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Introduction

In this page you can find the example usage for org.w3c.dom Element getParentNode.

Prototype

public Node getParentNode();

Source Link

Document

The parent of this node.

Usage

From source file:loci.formats.in.LIFReader.java

private void translateImageNames(Element imageNode, int image) {
    final List<String> names = new ArrayList<String>();
    Element parent = imageNode;
    while (true) {
        parent = (Element) parent.getParentNode();
        if (parent == null || parent.getNodeName().equals("LEICA")) {
            break;
        }/*from  ww  w  . java2 s  .  c o m*/
        if (parent.getNodeName().equals("Element")) {
            names.add(parent.getAttribute("Name"));
        }
    }
    imageNames[image] = "";
    for (int i = names.size() - 2; i >= 0; i--) {
        imageNames[image] += names.get(i);
        if (i > 0)
            imageNames[image] += "/";
    }
}

From source file:org.gvnix.web.menu.roo.addon.MenuEntryOperationsImpl.java

/** {@inheritDoc} */
public void moveInto(JavaSymbolName pageId, JavaSymbolName intoId) {
    Document document = getMenuDocument();

    // make the root element of the menu the one with the menu identifier
    // allowing for different decorations of menu
    Element rootElement = XmlUtils.findFirstElement(ID_MENU_EXP, (Element) document.getFirstChild());

    if (!rootElement.getNodeName().equals(GVNIX_MENU)) {
        throw new IllegalArgumentException(INVALID_XML);
    }//from   ww  w.j a v a  2  s .  c o m

    // check for existence of menu category by looking for the identifier
    // provided
    Element pageElement = XmlUtils.findFirstElement(ID_EXP.concat(pageId.getSymbolName()).concat("']"),
            rootElement);

    // exit if menu entry doesn't exist
    Validate.notNull(pageElement, PAGE.concat(pageId.getSymbolName()).concat(NOT_FOUND));

    Element intoElement = XmlUtils.findFirstElement(ID_EXP.concat(intoId.getSymbolName()).concat("']"),
            rootElement);

    // exit if menu entry doesn't exist
    Validate.notNull(intoElement, PAGE.concat(intoId.getSymbolName()).concat(NOT_FOUND));

    // parent element where remove menu entry element
    Element parent = (Element) pageElement.getParentNode();
    parent.removeChild(pageElement);

    // insert
    intoElement.appendChild(pageElement);

    writeXMLConfigIfNeeded(document);
}

From source file:org.gvnix.web.menu.roo.addon.MenuEntryOperationsImpl.java

/** {@inheritDoc} */
public void moveBefore(JavaSymbolName pageId, JavaSymbolName beforeId) {
    Document document = getMenuDocument();

    // make the root element of the menu the one with the menu identifier
    // allowing for different decorations of menu
    Element rootElement = XmlUtils.findFirstElement(ID_MENU_EXP, (Element) document.getFirstChild());

    if (!rootElement.getNodeName().equals(GVNIX_MENU)) {
        throw new IllegalArgumentException(INVALID_XML);
    }//  ww  w  .  j ava2 s .  c om

    // check for existence of menu category by looking for the identifier
    // provided
    Element pageElement = XmlUtils.findFirstElement(ID_EXP.concat(pageId.getSymbolName()).concat("']"),
            rootElement);

    // exit if menu entry doesn't exist
    Validate.notNull(pageElement, PAGE.concat(pageId.getSymbolName()).concat(NOT_FOUND));

    Element beforeElement = XmlUtils.findFirstElement(ID_EXP.concat(beforeId.getSymbolName()).concat("']"),
            rootElement);

    // exit if menu entry doesn't exist
    Validate.notNull(beforeElement, PAGE.concat(beforeId.getSymbolName()).concat(NOT_FOUND));

    // page parent element where remove menu entry element
    Element pageParentEl = (Element) pageElement.getParentNode();
    pageParentEl.removeChild(pageElement);

    // before parent element where execute insert before
    Element beforeParentEl = (Element) beforeElement.getParentNode();
    beforeParentEl.insertBefore(pageElement, beforeElement);

    writeXMLConfigIfNeeded(document);
}

From source file:loci.formats.in.LIFReader.java

private void translateMetadata(Element root) throws FormatException {
    Element realRoot = (Element) root.getChildNodes().item(0);

    NodeList toPrune = getNodes(realRoot, "LDM_Block_Sequential_Master");
    if (toPrune != null) {
        for (int i = 0; i < toPrune.getLength(); i++) {
            Element prune = (Element) toPrune.item(i);
            Element parent = (Element) prune.getParentNode();
            parent.removeChild(prune);//from   www  .  j a  v  a 2s .c om
        }
    }

    NodeList images = getNodes(realRoot, "Image");
    List<Element> imageNodes = new ArrayList<Element>();
    Long[] oldOffsets = null;
    if (images.getLength() > offsets.size()) {
        oldOffsets = offsets.toArray(new Long[offsets.size()]);
        offsets.clear();
    }

    int nextOffset = 0;
    for (int i = 0; i < images.getLength(); i++) {
        Element image = (Element) images.item(i);
        Element grandparent = (Element) image.getParentNode();
        if (grandparent == null) {
            continue;
        }
        grandparent = (Element) grandparent.getParentNode();
        if (grandparent == null) {
            continue;
        }
        if (!"ProcessingHistory".equals(grandparent.getNodeName())) {
            // image is being referenced from an event list
            imageNodes.add(image);
            if (oldOffsets != null && nextOffset < oldOffsets.length) {
                offsets.add(oldOffsets[nextOffset]);
            }
        }
        grandparent = (Element) grandparent.getParentNode();
        if (grandparent == null) {
            continue;
        }
        grandparent = (Element) grandparent.getParentNode();
        if (grandparent != null) {
            if (!"Image".equals(grandparent.getNodeName())) {
                nextOffset++;
            }
        }
    }

    tileCount = new int[imageNodes.size()];
    Arrays.fill(tileCount, 1);
    core = new ArrayList<CoreMetadata>(imageNodes.size());
    acquiredDate = new double[imageNodes.size()];
    descriptions = new String[imageNodes.size()];
    laserWavelength = new List[imageNodes.size()];
    laserIntensity = new List[imageNodes.size()];
    laserActive = new List[imageNodes.size()];
    laserFrap = new List[imageNodes.size()];
    timestamps = new double[imageNodes.size()][];
    activeDetector = new List[imageNodes.size()];
    serialNumber = new String[imageNodes.size()];
    lensNA = new Double[imageNodes.size()];
    magnification = new Double[imageNodes.size()];
    immersions = new String[imageNodes.size()];
    corrections = new String[imageNodes.size()];
    objectiveModels = new String[imageNodes.size()];
    posX = new Length[imageNodes.size()];
    posY = new Length[imageNodes.size()];
    posZ = new Length[imageNodes.size()];
    refractiveIndex = new Double[imageNodes.size()];
    cutIns = new List[imageNodes.size()];
    cutOuts = new List[imageNodes.size()];
    filterModels = new List[imageNodes.size()];
    microscopeModels = new String[imageNodes.size()];
    detectorModels = new List[imageNodes.size()];
    detectorIndexes = new HashMap[imageNodes.size()];
    zSteps = new Double[imageNodes.size()];
    tSteps = new Double[imageNodes.size()];
    pinholes = new Double[imageNodes.size()];
    zooms = new Double[imageNodes.size()];

    expTimes = new Double[imageNodes.size()][];
    gains = new Double[imageNodes.size()][];
    detectorOffsets = new Double[imageNodes.size()][];
    channelNames = new String[imageNodes.size()][];
    exWaves = new Double[imageNodes.size()][];
    imageROIs = new ROI[imageNodes.size()][];
    imageNames = new String[imageNodes.size()];

    core.clear();
    for (int i = 0; i < imageNodes.size(); i++) {
        Element image = imageNodes.get(i);

        CoreMetadata ms = new CoreMetadata();
        core.add(ms);

        int index = core.size() - 1;
        setSeries(index);

        translateImageNames(image, index);
        translateImageNodes(image, index);
        translateAttachmentNodes(image, index);
        translateScannerSettings(image, index);
        translateFilterSettings(image, index);
        translateTimestamps(image, index);
        translateLaserLines(image, index);
        translateROIs(image, index);
        translateSingleROIs(image, index);
        translateDetectors(image, index);

        final Deque<String> nameStack = new ArrayDeque<String>();
        populateOriginalMetadata(image, nameStack);
        addUserCommentMeta(image, i);
    }
    setSeries(0);

    int totalSeries = 0;
    for (int count : tileCount) {
        totalSeries += count;
    }
    ArrayList<CoreMetadata> newCore = new ArrayList<CoreMetadata>();
    for (int i = 0; i < core.size(); i++) {
        for (int tile = 0; tile < tileCount[i]; tile++) {
            newCore.add(core.get(i));
        }
    }
    core = newCore;
}

From source file:loci.formats.in.LIFReader.java

private void translateDetectors(Element imageNode, int image) throws FormatException {
    NodeList definitions = getNodes(imageNode, "ATLConfocalSettingDefinition");
    if (definitions == null)
        return;/*from  w w  w.  jav a2 s .co  m*/

    final List<String> channels = new ArrayList<String>();
    laserActive[image] = new ArrayList<Boolean>();
    int nextChannel = 0;
    for (int definition = 0; definition < definitions.getLength(); definition++) {
        Element definitionNode = (Element) definitions.item(definition);
        String parentName = definitionNode.getParentNode().getNodeName();
        boolean isMaster = parentName.endsWith("Master");
        NodeList detectors = getNodes(definitionNode, "Detector");
        if (detectors == null)
            return;
        int count = 0;
        for (int d = 0; d < detectors.getLength(); d++) {
            Element detector = (Element) detectors.item(d);
            NodeList multibands = null;
            if (!isMaster) {
                multibands = getNodes(definitionNode, "MultiBand");
            }

            String v = detector.getAttribute("Gain");
            Double gain = v == null || v.trim().isEmpty() ? null : new Double(v.trim());
            v = detector.getAttribute("Offset");
            Double offset = v == null || v.trim().isEmpty() ? null : new Double(v.trim());

            boolean active = "1".equals(detector.getAttribute("IsActive"));
            String c = detector.getAttribute("Channel");
            int channel = (c == null || c.trim().length() == 0) ? 0 : Integer.parseInt(c);
            if (active) {
                if (detectorIndexes[image] != null && detectorModels[image] != null) {
                    detectorModels[image].add(detectorIndexes[image].get(channel));
                }

                Element multiband = null;

                if (multibands != null) {
                    for (int i = 0; i < multibands.getLength(); i++) {
                        Element mb = (Element) multibands.item(i);
                        if (channel == Integer.parseInt(mb.getAttribute("Channel"))) {
                            multiband = mb;
                            break;
                        }
                    }
                }

                if (multiband != null) {
                    String dye = multiband.getAttribute("DyeName");
                    if (!channels.contains(dye)) {
                        channels.add(dye);
                    }

                    double cutIn = new Double(multiband.getAttribute("LeftWorld"));
                    double cutOut = new Double(multiband.getAttribute("RightWorld"));
                    if ((int) cutIn > 0) {
                        if (cutIns[image] == null) {
                            cutIns[image] = new ArrayList<PositiveFloat>();
                        }
                        Length in = FormatTools.getCutIn((double) Math.round(cutIn));
                        if (in != null) {
                            cutIns[image].add(in);
                        }
                    }
                    if ((int) cutOut > 0) {
                        if (cutOuts[image] == null) {
                            cutOuts[image] = new ArrayList<PositiveFloat>();
                        }
                        Length out = FormatTools.getCutOut((double) Math.round(cutOut));
                        if (out != null) {
                            cutOuts[image].add(out);
                        }
                    }
                } else {
                    channels.add("");
                }

                if (!isMaster) {
                    if (channel < nextChannel) {
                        nextChannel = 0;
                    }

                    if (nextChannel < getEffectiveSizeC()) {
                        if (gains[image] != null) {
                            gains[image][nextChannel] = gain;
                        }
                        if (detectorOffsets[image] != null) {
                            detectorOffsets[image][nextChannel] = offset;
                        }
                    }

                    nextChannel++;
                }
            } else {
                count++;
            }
            if (active && activeDetector[image] != null) {
                activeDetector[image].add(active);
            }
        }
        //Store values to check if actually it is active.
        if (!isMaster) {
            laserActive[image].add(count < detectors.getLength());
        }
    }

    if (channels != null && channelNames[image] != null) {
        for (int i = 0; i < getEffectiveSizeC(); i++) {
            int index = i + channels.size() - getEffectiveSizeC();
            if (index >= 0 && index < channels.size()) {
                if (channelNames[image][i] == null || channelNames[image][i].trim().isEmpty()) {
                    channelNames[image][i] = channels.get(index);
                }
            }
        }
    }
}

From source file:loci.formats.in.LIFReader.java

private void translateLaserLines(Element imageNode, int image) throws FormatException {
    NodeList aotfLists = getNodes(imageNode, "AotfList");
    if (aotfLists == null || aotfLists.getLength() == 0)
        return;// w ww. j a  v a2 s  . c  om

    laserWavelength[image] = new ArrayList<Double>();
    laserIntensity[image] = new ArrayList<Double>();
    laserFrap[image] = new ArrayList<Boolean>();

    int baseIntensityIndex = 0;

    for (int channel = 0; channel < aotfLists.getLength(); channel++) {
        Element aotf = (Element) aotfLists.item(channel);
        NodeList laserLines = getNodes(aotf, "LaserLineSetting");
        if (laserLines == null)
            return;
        String gpName = aotf.getParentNode().getParentNode().getNodeName();
        //might need parent for attachment
        boolean isMaster = gpName.endsWith("Sequential_Master") || gpName.endsWith("Attachment");
        laserFrap[image].add(gpName.endsWith("FRAP_Master"));
        for (int laser = 0; laser < laserLines.getLength(); laser++) {
            Element laserLine = (Element) laserLines.item(laser);

            if (isMaster) {
                continue;
            }
            String lineIndex = laserLine.getAttribute("LineIndex");
            String qual = laserLine.getAttribute("Qualifier");
            int index = lineIndex == null || lineIndex.trim().isEmpty() ? 0
                    : Integer.parseInt(lineIndex.trim());
            int qualifier = qual == null || qual.trim().isEmpty() ? 0 : Integer.parseInt(qual.trim());

            index += (2 - (qualifier / 10));
            if (index < 0) {
                continue;
                //index = 0;
            }

            String v = laserLine.getAttribute("LaserLine");
            Double wavelength = 0d;
            if (v != null && !v.trim().isEmpty()) {
                wavelength = new Double(v.trim());
            }
            if (index < laserWavelength[image].size()) {
                laserWavelength[image].set(index, wavelength);
            } else {
                for (int i = laserWavelength[image].size(); i < index; i++) {
                    laserWavelength[image].add(Double.valueOf(0));
                }
                laserWavelength[image].add(wavelength);
            }

            String intensity = laserLine.getAttribute("IntensityDev");
            double realIntensity = intensity == null || intensity.trim().isEmpty() ? 0d
                    : new Double(intensity.trim());
            realIntensity = 100d - realIntensity;

            int realIndex = baseIntensityIndex + index;

            if (realIndex < laserIntensity[image].size()) {
                laserIntensity[image].set(realIndex, realIntensity);
            } else {
                while (realIndex < laserIntensity[image].size()) {
                    laserIntensity[image].add(100d);
                }
                laserIntensity[image].add(realIntensity);
            }
        }

        baseIntensityIndex += laserWavelength[image].size();
    }
}

From source file:com.netscape.cmscore.apps.CMSEngine.java

/**
 * Parse server.xml to get the ports and IPs
 * @throws EBaseException/*  w  w w .  j a  va2 s .  com*/
 */
private void parseServerXML() throws EBaseException {
    try {
        String instanceRoot = mConfig.getString("instanceRoot");
        String path = instanceRoot + File.separator + "conf" + File.separator + SERVER_XML;
        DOMParser parser = new DOMParser();
        parser.parse(path);
        NodeList nodes = parser.getDocument().getElementsByTagName("Connector");
        String parentName = "";
        String name = "";
        String port = "";
        for (int i = 0; i < nodes.getLength(); i++) {
            Element n = (Element) nodes.item(i);

            parentName = "";
            Element p = (Element) n.getParentNode();
            if (p != null) {
                parentName = p.getAttribute("name");
            }
            name = n.getAttribute("name");
            port = n.getAttribute("port");

            // The "server.xml" file is parsed from top-to-bottom, and
            // supports BOTH "Port Separation" (the new default method)
            // as well as "Shared Ports" (the old legacy method).  Since
            // both methods must be supported, the file structure MUST
            // conform to ONE AND ONLY ONE of the following formats:
            //
            // Port Separation:
            //
            //  <Catalina>
            //     ...
            //     <!-- Port Separation:  Unsecure Port -->
            //     <Connector name="Unsecure" . . .
            //     ...
            //     <!-- Port Separation:  Agent Secure Port -->
            //     <Connector name="Agent" . . .
            //     ...
            //     <!-- Port Separation:  Admin Secure Port -->
            //     <Connector name="Admin" . . .
            //     ...
            //     <!-- Port Separation:  EE Secure Port -->
            //     <Connector name="EE" . . .
            //     ...
            //  </Catalina>
            //
            //
            // Shared Ports:
            //
            //  <Catalina>
            //     ...
            //     <!-- Shared Ports:  Unsecure Port -->
            //     <Connector name="Unsecure" . . .
            //     ...
            //     <!-- Shared Ports:  Agent, EE, and Admin Secure Port -->
            //     <Connector name="Secure" . . .
            //     ...
            //     <!--
            //     <Connector name="Unused" . . .
            //     -->
            //     ...
            //     <!--
            //     <Connector name="Unused" . . .
            //     -->
            //     ...
            //  </Catalina>
            //
            if (parentName.equals("Catalina")) {
                if (name.equals("Unsecure")) {
                    // Port Separation:  Unsecure Port
                    //                   OR
                    // Shared Ports:     Unsecure Port
                    info[EE_NON_SSL][PORT] = port;
                } else if (name.equals("Agent")) {
                    // Port Separation:  Agent Secure Port
                    info[AGENT][PORT] = port;
                } else if (name.equals("Admin")) {
                    // Port Separation:  Admin Secure Port
                    info[ADMIN][PORT] = port;
                } else if (name.equals("EE")) {
                    // Port Separation:  EE Secure Port
                    info[EE_SSL][PORT] = port;
                } else if (name.equals("EEClientAuth")) {
                    // Port Separation: EE Client Auth Secure Port
                    info[EE_CLIENT_AUTH_SSL][PORT] = port;
                } else if (name.equals("Secure")) {
                    // Shared Ports:  Agent, EE, and Admin Secure Port
                    info[AGENT][PORT] = port;
                    info[ADMIN][PORT] = port;
                    info[EE_SSL][PORT] = port;
                    info[EE_CLIENT_AUTH_SSL][PORT] = port;
                }
            }
        }

    } catch (Exception e) {
        logger.error("CMSEngine: parseServerXML exception: " + e.getMessage(), e);
        throw new EBaseException("CMSEngine: Cannot parse the configuration file. " + e.getMessage(), e);
    }
}

From source file:lcmc.data.VMSXML.java

/** Remove XML from some device. */
private void removeXML(final String domainName, final Map<String, String> parametersMap, final String path,
        final VirtualHardwareComparator vhc, final String virshOptions) {
    final String configName = namesConfigsMap.get(domainName);
    if (configName == null) {
        return;/*from  w  w w .  j  a  v a 2  s . co  m*/
    }
    final Node domainNode = getDomainNode(domainName);
    if (domainNode == null) {
        return;
    }
    final XPath xpath = XPathFactory.newInstance().newXPath();
    try {
        final NodeList nodes = (NodeList) xpath.evaluate(path, domainNode, XPathConstants.NODESET);
        final Element hwNode = vhc.getElement(nodes, parametersMap);
        if (hwNode != null) {
            hwNode.getParentNode().removeChild(hwNode);
        }
    } catch (final javax.xml.xpath.XPathExpressionException e) {
        Tools.appError("could not evaluate: ", e);
        return;
    }
    saveAndDefine(domainNode, domainName, virshOptions);
}

From source file:org.gvnix.service.roo.addon.addon.ws.WSConfigServiceImpl.java

/**
 * <p>//  w  ww .  ja  va 2s .  co  m
 * Adds a wsdl location to the codegen plugin configuration. If code
 * generation plugin configuration not exists, it will be created.
 * </p>
 * 
 * @param wsdlLocation WSDL file location.
 * @param wsdlDocument WSDL file.
 */
private void addExportWSDLLocationDocument(String wsdlLocation, Document wsdlDocument) {

    // install Plugin
    installWsdl2javaPlugin();

    // Get pom.xml
    String pomPath = getPomFilePath();
    Validate.notNull(pomPath, POM_FILE_NOT_FOUND);

    // Get a mutable pom.xml reference to modify it
    MutableFile pomMutableFile = getFileManager().updateFile(pomPath);
    Document pom = getInputDocument(pomMutableFile.getInputStream());
    Element root = pom.getDocumentElement();

    // Get plugin element
    Element codegenWsPlugin = XmlUtils.findFirstElement(
            "/project/build/plugins/plugin[groupId='org.apache.cxf' and artifactId='cxf-codegen-plugin']",
            root);

    // If plugin element not exists, error message
    Validate.notNull(codegenWsPlugin,
            "Codegen plugin is not defined in the pom.xml, relaunch again this command.");

    // Checks if already exists the execution.
    Element oldGenerateSourcesCxfServer = XmlUtils.findFirstElement(
            "/project/build/plugins/plugin/executions/execution[id='" + CXF_WSDL2JAVA_EXECUTION_ID + "']",
            root);

    // Generate execution configuration element.
    Element newGenerateSourcesCxfServer = createWsdl2JavaExecutionElement(pom, wsdlDocument, wsdlLocation);

    // Checks if exists executions.
    Element oldExecutions = DomUtils.findFirstElementByName(EXECUTIONS, codegenWsPlugin);

    Element newExecutions;

    // To Update execution definitions It must be replaced in pom.xml to
    // maintain the format.
    if (oldGenerateSourcesCxfServer != null) {
        oldGenerateSourcesCxfServer.getParentNode().replaceChild(newGenerateSourcesCxfServer,
                oldGenerateSourcesCxfServer);
    } else {

        if (oldExecutions == null) {
            newExecutions = pom.createElement(EXECUTIONS);
            newExecutions.appendChild(newGenerateSourcesCxfServer);

            codegenWsPlugin.appendChild(newExecutions);
        } else {
            newExecutions = oldExecutions;
            newExecutions.appendChild(newGenerateSourcesCxfServer);
            oldExecutions.getParentNode().replaceChild(newExecutions, oldExecutions);
        }
    }

    // Write new XML to disk
    XmlUtils.writeXml(pomMutableFile.getOutputStream(), pom);

}

From source file:com.enonic.vertical.adminweb.MenuHandlerServlet.java

private void moveMenuItemUp(HttpServletRequest request, HttpServletResponse response, HttpSession session,
        ExtendedMap formItems) throws VerticalAdminException {

    String menuXML = (String) session.getAttribute("menuxml");
    Document doc = XMLTool.domparse(menuXML);

    String xpath = "//menuitem[@key = '" + formItems.getString("key") + "']";
    Element elem = (Element) XMLTool.selectNode(doc, xpath);

    Element parent = (Element) elem.getParentNode();
    Element previousSibling = (Element) elem.getPreviousSibling();
    elem = (Element) parent.removeChild(elem);
    doc.importNode(elem, true);// ww w . j  a  v  a2s  . co  m

    if (previousSibling == null)
    // This is the top element, move it to the bottom
    {
        parent.appendChild(elem);
    } else {
        parent.insertBefore(elem, previousSibling);
    }

    session.setAttribute("menuxml", XMLTool.documentToString(doc));

    MultiValueMap queryParams = new MultiValueMap();
    queryParams.put("page", formItems.get("page"));
    queryParams.put("op", "browse");
    queryParams.put("keepxml", "yes");
    queryParams.put("highlight", formItems.get("key"));
    queryParams.put("menukey", formItems.get("menukey"));
    queryParams.put("parentmi", formItems.get("parentmi"));
    queryParams.put("subop", "shiftmenuitems");

    queryParams.put("move_menuitem", formItems.getString("move_menuitem", ""));
    queryParams.put("move_from_parent", formItems.getString("move_from_parent", ""));
    queryParams.put("move_to_parent", formItems.getString("move_to_parent", ""));

    redirectClientToAdminPath("adminpage", queryParams, request, response);
}