List of usage examples for org.w3c.dom Node removeChild
public Node removeChild(Node oldChild) throws DOMException;
oldChild from the list of children, and returns it. From source file:com.panet.imeta.trans.steps.xmlinput.XMLInput.java
private Object[] getRowFromXML() throws KettleValueException { // finished reading the file, read the next file while (data.itemPosition >= data.itemCount || data.file == null) { data.file = null;/*from ww w.j av a 2s. c o m*/ if (!openNextFile()) { return null; } } Object[] outputRowData = buildEmptyRow(); // Get the item in the XML file... // First get the appropriate node Node itemNode; if (meta.getInputPosition().length > 1) { itemNode = XMLHandler.getSubNodeByNr(data.section, data.itemElement, data.itemPosition); } else { itemNode = data.section; // Only the root node, 1 element to read // in the whole document. } data.itemPosition++; // Read from the Node... for (int i = 0; i < meta.getInputFields().length; i++) { Node node = itemNode; XMLInputField xmlInputField = meta.getInputFields()[i]; // This value will contain the value we're looking for... // String value = null; for (int p = 0; (value == null) && node != null && p < xmlInputField.getFieldPosition().length; p++) { XMLInputFieldPosition pos = xmlInputField.getFieldPosition()[p]; switch (pos.getType()) { case XMLInputFieldPosition.XML_ELEMENT: { if (pos.getElementNr() <= 1) { Node subNode = XMLHandler.getSubNode(node, pos.getName()); if (subNode != null) { if (p == xmlInputField.getFieldPosition().length - 1) // last // level { value = XMLHandler.getNodeValue(subNode); } } else { if (log.isDebug()) logDebug(Messages.getString("XMLInput.Log.UnableToFindPosition", pos.toString(), node.toString())); } node = subNode; } else // Multiple possible values: get number // pos.getElementNr()! { Node subNode = XMLHandler.getSubNodeByNr(node, pos.getName(), pos.getElementNr() - 1, false); if (subNode != null) { if (p == xmlInputField.getFieldPosition().length - 1) // last // level { value = XMLHandler.getNodeValue(subNode); } } else { if (log.isDebug()) logDebug(Messages.getString("XMLInput.Log.UnableToFindPosition", pos.toString(), node.toString())); } node = subNode; } } break; case XMLInputFieldPosition.XML_ATTRIBUTE: { value = XMLHandler.getTagAttribute(node, pos.getName()); } break; case XMLInputFieldPosition.XML_ROOT: { value = XMLHandler.getNodeValue(node); } break; default: break; } } // OK, we have grabbed the string called value // Trim it, convert it, ... // DO Trimming! switch (xmlInputField.getTrimType()) { case XMLInputField.TYPE_TRIM_LEFT: value = Const.ltrim(value); break; case XMLInputField.TYPE_TRIM_RIGHT: value = Const.rtrim(value); break; case XMLInputField.TYPE_TRIM_BOTH: value = Const.trim(value); break; default: break; } // System.out.println("after trim, field #"+i+" : "+v); // DO CONVERSIONS... // ValueMetaInterface targetValueMeta = data.outputRowMeta.getValueMeta(i); ValueMetaInterface sourceValueMeta = data.convertRowMeta.getValueMeta(i); outputRowData[i] = targetValueMeta.convertData(sourceValueMeta, value); // Do we need to repeat this field if it is null? if (meta.getInputFields()[i].isRepeated()) { if (data.previousRow != null && Const.isEmpty(value)) { outputRowData[i] = data.previousRow[i]; } } } // End of loop over fields... int outputIndex = meta.getInputFields().length; // See if we need to add the filename to the row... if (meta.includeFilename() && !Const.isEmpty(meta.getFilenameField())) { outputRowData[outputIndex++] = KettleVFS.getFilename(data.file); } // See if we need to add the row number to the row... if (meta.includeRowNumber() && !Const.isEmpty(meta.getRowNumberField())) { outputRowData[outputIndex++] = new Long(data.rownr); } RowMetaInterface irow = getInputRowMeta(); data.previousRow = irow == null ? outputRowData : (Object[]) irow.cloneRow(outputRowData); // copy it to make // surely the next step doesn't change it in between... data.rownr++; // Throw away the information in the item? NodeList nodeList = itemNode.getChildNodes(); for (int i = 0; i < nodeList.getLength(); i++) { itemNode.removeChild(nodeList.item(i)); } return outputRowData; }
From source file:com.ext.portlet.epsos.EpsosHelperService.java
public byte[] generateDispensationDocumentFromPrescription(byte[] bytes, List<ViewResult> lines, List<ViewResult> dispensedLines, SpiritUserClientDto doctor, User user) { byte[] bytesED = null; try {// www.j a v a 2s . c o m DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance(); DocumentBuilder db = dbf.newDocumentBuilder(); Document dom = db.parse(new ByteArrayInputStream(bytes)); XPath xpath = XPathFactory.newInstance().newXPath(); // TODO change effective time // TODO change language code to fit dispenser // TODO change OID, have to use country b OID // TODO author must be the dispenser not the prescriber // TODO custodian and legal authenticator should be not copied from ep doc // TODO // fixes // First I have to check if exists in order not to create it fixNode(dom, xpath, "/ClinicalDocument/legalAuthenticator/assignedEntity/representedOrganization/addr", "state", "N/A"); // add telecom to patient role fixNode(dom, xpath, "/ClinicalDocument/author/assignedAuthor/representedOrganization/addr", "state", "N/A"); // add street Address Line fixNode(dom, xpath, "/ClinicalDocument/legalAuthenticator/assignedEntity/representedOrganization/addr", "streetAddressLine", "N/A"); // add City fixNode(dom, xpath, "/ClinicalDocument/legalAuthenticator/assignedEntity/representedOrganization/addr", "city", "N/A"); // add postalcode fixNode(dom, xpath, "/ClinicalDocument/legalAuthenticator/assignedEntity/representedOrganization/addr", "postalCode", "N/A"); fixNode(dom, xpath, "/ClinicalDocument/author/assignedAuthor/representedOrganization/addr", "streetAddressLine", "N/A"); fixNode(dom, xpath, "/ClinicalDocument/author/assignedAuthor/representedOrganization/addr", "city", "N/A"); fixNode(dom, xpath, "/ClinicalDocument/author/assignedAuthor/representedOrganization/addr", "postalCode", "N/A"); changeNode(dom, xpath, "/ClinicalDocument/author/assignedAuthor/representedOrganization", "name", "N/A"); fixNode(dom, xpath, "/ClinicalDocument/component/structuredBody/component/section/entry/supply/entryRelationship/substanceAdministration/author/assignedAuthor/representedOrganization/addr", "postalCode", "N/A"); String ful_ext = ""; String ful_root = ""; XPathExpression ful1 = xpath.compile("/ClinicalDocument/component/structuredBody/component/section/id"); NodeList fulRONodes = (NodeList) ful1.evaluate(dom, XPathConstants.NODESET); if (fulRONodes.getLength() > 0) { for (int t = 0; t < fulRONodes.getLength(); t++) { Node AddrNode = fulRONodes.item(t); try { ful_ext = AddrNode.getAttributes().getNamedItem("extension").getNodeValue() + ""; ful_root = AddrNode.getAttributes().getNamedItem("root").getNodeValue() + ""; } catch (Exception e) { } } } // fix infullfillment XPathExpression rootNodeExpr = xpath.compile("/ClinicalDocument"); Node rootNode = (Node) rootNodeExpr.evaluate(dom, XPathConstants.NODE); try { Node infulfilment = null; XPathExpression salRO = xpath.compile("/ClinicalDocument/inFulfillmentOf"); NodeList salRONodes = (NodeList) salRO.evaluate(dom, XPathConstants.NODESET); if (salRONodes.getLength() == 0) { XPathExpression salAddr = xpath.compile("/ClinicalDocument/relatedDocument"); NodeList salAddrNodes = (NodeList) salAddr.evaluate(dom, XPathConstants.NODESET); if (salAddrNodes.getLength() > 0) { for (int t = 0; t < salAddrNodes.getLength(); t++) { Node AddrNode = salAddrNodes.item(t); Node order = dom.createElement("inFulfillmentOf"); //legalNode.appendChild(order); /* * <relatedDocument typeCode="XFRM"> * <parentDocument> * <id extension="2601010002.pdf.ep.52105899467.52105899468:39" root="2.16.840.1.113883.2.24.2.30"/> * </parentDocument> * </relatedDocument> * * */ //Node order1 = dom.createElement("order"); Node order1 = dom.createElement("relatedDocument"); Node parentDoc = dom.createElement("parentDocument"); addAttribute(dom, parentDoc, "typeCode", "XFRM"); order1.appendChild(parentDoc); Node orderNode = dom.createElement("id"); addAttribute(dom, orderNode, "extension", ful_ext); addAttribute(dom, orderNode, "root", ful_root); parentDoc.appendChild(orderNode); rootNode.insertBefore(order, AddrNode); infulfilment = rootNode.cloneNode(true); } } } } catch (Exception e) { _log.error("Error fixing node inFulfillmentOf ..."); } XPathExpression Telecom = xpath .compile("/ClinicalDocument/author/assignedAuthor/representedOrganization"); NodeList TelecomNodes = (NodeList) Telecom.evaluate(dom, XPathConstants.NODESET); if (TelecomNodes.getLength() == 0) { for (int t = 0; t < TelecomNodes.getLength(); t++) { Node TelecomNode = TelecomNodes.item(t); Node telecom = dom.createElement("telecom"); addAttribute(dom, telecom, "use", "WP"); addAttribute(dom, telecom, "value", "mailto:demo@epsos.eu"); TelecomNode.insertBefore(telecom, TelecomNodes.item(0)); } } // header xpaths XPathExpression clinicalDocExpr = xpath.compile("/ClinicalDocument"); Node clinicalDocNode = (Node) clinicalDocExpr.evaluate(dom, XPathConstants.NODE); if (clinicalDocNode != null) { addAttribute(dom, clinicalDocNode, "xmlns", "urn:hl7-org:v3"); addAttribute(dom, clinicalDocNode, "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance"); addAttribute(dom, clinicalDocNode, "xsi:schemaLocation", "urn:hl7-org:v3 CDASchema/CDA_extended.xsd"); addAttribute(dom, clinicalDocNode, "classCode", "DOCCLIN"); addAttribute(dom, clinicalDocNode, "moodCode", "EVN"); } XPathExpression docTemplateIdExpr = xpath.compile("/ClinicalDocument/templateId"); XPathExpression docCodeExpr = xpath.compile("/ClinicalDocument/code[@codeSystemName='" + XML_LOINC_SYSTEM + "' and @codeSystem='" + XML_LOINC_CODESYSTEM + "']"); XPathExpression docTitleExpr = xpath.compile("/ClinicalDocument/title"); // change templateId / LOINC code / title to dispensation root code NodeList templateIdNodes = (NodeList) docTemplateIdExpr.evaluate(dom, XPathConstants.NODESET); if (templateIdNodes != null) { for (int t = 0; t < templateIdNodes.getLength(); t++) { Node templateIdNode = templateIdNodes.item(t); templateIdNode.getAttributes().getNamedItem("root").setNodeValue(XML_DISPENSATION_TEMPLATEID); if (t > 0) templateIdNode.getParentNode().removeChild(templateIdNode); // remove extra templateId nodes } } Node codeNode = (Node) docCodeExpr.evaluate(dom, XPathConstants.NODE); if (codeNode != null) { if (codeNode.getAttributes().getNamedItem("code") != null) codeNode.getAttributes().getNamedItem("code").setNodeValue(XML_DISPENSATION_LOINC_CODE); if (codeNode.getAttributes().getNamedItem("displayName") != null) codeNode.getAttributes().getNamedItem("displayName").setNodeValue("eDispensation"); if (codeNode.getAttributes().getNamedItem("codeSystemName") != null) codeNode.getAttributes().getNamedItem("codeSystemName") .setNodeValue(XML_DISPENSATION_LOINC_CODESYSTEMNAME); if (codeNode.getAttributes().getNamedItem("codeSystem") != null) codeNode.getAttributes().getNamedItem("codeSystem") .setNodeValue(XML_DISPENSATION_LOINC_CODESYSTEM); } Node titleNode = (Node) docTitleExpr.evaluate(dom, XPathConstants.NODE); if (titleNode != null) { titleNode.setTextContent(XML_DISPENSATION_TITLE); } XPathExpression sectionExpr = xpath .compile("/ClinicalDocument/component/structuredBody/component/section[templateId/@root='" + XML_PRESCRIPTION_ENTRY_TEMPLATEID + "']"); XPathExpression substanceExpr = xpath.compile("entry/substanceAdministration"); XPathExpression idExpr = xpath.compile("id"); NodeList prescriptionNodes = (NodeList) sectionExpr.evaluate(dom, XPathConstants.NODESET); // substanceAdministration.appendChild(newAuthorNode); if (prescriptionNodes != null && prescriptionNodes.getLength() > 0) { // calculate list of prescription ids to keep // calculate list of prescription lines to keep Set<String> prescriptionIdsToKeep = new HashSet<String>(); Set<String> materialIdsToKeep = new HashSet<String>(); HashMap<String, Node> materialReferences = new HashMap<String, Node>(); if (dispensedLines != null && dispensedLines.size() > 0) { for (int i = 0; i < dispensedLines.size(); i++) { ViewResult d_line = dispensedLines.get(i); materialIdsToKeep.add((String) d_line.getField10()); prescriptionIdsToKeep.add((String) d_line.getField9()); } } Node structuredBodyNode = null; for (int p = 0; p < prescriptionNodes.getLength(); p++) { // for each one of the prescription nodes (<component> tags) check if their id belongs to the list of prescription Ids to keep in dispensation document Node sectionNode = prescriptionNodes.item(p); Node idNode = (Node) idExpr.evaluate(sectionNode, XPathConstants.NODE); String prescrId = idNode.getAttributes().getNamedItem("extension").getNodeValue(); if (prescriptionIdsToKeep.contains(prescrId)) { NodeList substanceAdministrationNodes = (NodeList) substanceExpr.evaluate(sectionNode, XPathConstants.NODESET); if (substanceAdministrationNodes != null && substanceAdministrationNodes.getLength() > 0) { for (int s = 0; s < substanceAdministrationNodes.getLength(); s++) { // for each of the entries (substanceAdministration tags) within this prescription node // check if the materialid in question is one of the dispensed ones, else do nothing Node substanceAdministration = (Node) substanceAdministrationNodes.item(s); Node substanceIdNode = (Node) idExpr.evaluate(substanceAdministration, XPathConstants.NODE); String materialid = ""; try { materialid = substanceIdNode.getAttributes().getNamedItem("extension") .getNodeValue(); } catch (Exception e) { _log.error("error setting materialid"); } if (materialIdsToKeep.contains(materialid)) { // if the materialid is one of the dispensed ones, keep the substanceAdminstration node intact, // as it will be used as an entryRelationship in the dispensation entry we will create Node entryRelationshipNode = dom.createElement("entryRelationship"); addAttribute(dom, entryRelationshipNode, "typeCode", "REFR"); addTemplateId(dom, entryRelationshipNode, XML_DISPENSTATION_ENTRY_REFERENCEID); entryRelationshipNode.appendChild(substanceAdministration); materialReferences.put(materialid, entryRelationshipNode); } } } } // Then delete this node, dispensed lines will be written afterwards Node componentNode = sectionNode.getParentNode(); // component structuredBodyNode = componentNode.getParentNode(); // structuredBody structuredBodyNode.removeChild(componentNode); } // at the end of this for loop, prescription lines are removed from the document, and materialReferences hashmap contains // a mapping from materialId to ready nodes containing the entry relationship references to the corresponding prescription lines Node dispComponent = dom.createElement("component"); Node dispSection = dom.createElement("section"); addTemplateId(dom, dispSection, XML_DISPENSATION_ENTRY_PARENT_TEMPLATEID); addTemplateId(dom, dispSection, XML_DISPENSATION_ENTRY_TEMPLATEID); Node dispIdNode = dom.createElement("id"); //addAttribute(dom, dispIdNode, "root", prescriptionIdsToKeep.iterator().next()); addAttribute(dom, dispIdNode, "root", ful_root); addAttribute(dom, dispIdNode, "extension", ful_ext); dispSection.appendChild(dispIdNode); Node sectionCodeNode = dom.createElement("code"); addAttribute(dom, sectionCodeNode, "code", "60590-7"); addAttribute(dom, sectionCodeNode, "displayName", XML_DISPENSATION_TITLE); addAttribute(dom, sectionCodeNode, "codeSystem", XML_DISPENSATION_LOINC_CODESYSTEM); addAttribute(dom, sectionCodeNode, "codeSystemName", XML_DISPENSATION_LOINC_CODESYSTEMNAME); dispSection.appendChild(sectionCodeNode); Node title = dom.createElement("title"); title.setTextContent(XML_DISPENSATION_TITLE); dispSection.appendChild(title); Node text = dom.createElement("text"); Node textContent = this.generateDispensedLinesHtml(dispensedLines, db); textContent = textContent.cloneNode(true); dom.adoptNode(textContent); text.appendChild(textContent); dispSection.appendChild(text); dispComponent.appendChild(dispSection); structuredBodyNode.appendChild(dispComponent); for (int i = 0; i < dispensedLines.size(); i++) { ViewResult d_line = dispensedLines.get(i); String materialid = (String) d_line.getField10(); // for each dispensed line create a dispensation entry in the document, and use the entryRelationship calculated above Node entry = dom.createElement("entry"); Node supply = dom.createElement("supply"); addAttribute(dom, supply, "classCode", "SPLY"); addAttribute(dom, supply, "moodCode", "EVN"); // add templateId tags addTemplateId(dom, supply, XML_DISPENSATION_ENTRY_SUPPLY_TEMPLATE1); addTemplateId(dom, supply, XML_DISPENSATION_ENTRY_SUPPLY_TEMPLATE2); addTemplateId(dom, supply, XML_DISPENSATION_ENTRY_SUPPLY_TEMPLATE3); // add id tag Node supplyId = dom.createElement("id"); addAttribute(dom, supplyId, "root", XML_DISPENSATION_ENTRY_SUPPLY_ID_ROOT); addAttribute(dom, supplyId, "extension", (String) d_line.getField1()); supply.appendChild(supplyId); // add quantity tag Node quantity = dom.createElement("quantity"); String nrOfPacks = (String) d_line.getField8(); nrOfPacks = nrOfPacks.trim(); String value = nrOfPacks; String unit = "1"; if (nrOfPacks.indexOf(" ") != -1) { value = nrOfPacks.substring(0, nrOfPacks.indexOf(" ")); unit = nrOfPacks.substring(nrOfPacks.indexOf(" ") + 1); } addAttribute(dom, quantity, "value", (String) d_line.getField7()); addAttribute(dom, quantity, "unit", (String) d_line.getField12()); supply.appendChild(quantity); // add product tag addProductTag(dom, supply, d_line, materialReferences.get(materialid)); // add performer tag addPerformerTag(dom, supply, doctor); // add entryRelationship tag supply.appendChild(materialReferences.get(materialid)); // add substitution relationship tag if (d_line.getField3() != null && ((Boolean) d_line.getField3()).booleanValue()) { Node substitutionNode = dom.createElement("entryRelationship"); addAttribute(dom, substitutionNode, "typeCode", "COMP"); Node substanceAdminNode = dom.createElement("substanceAdministration"); addAttribute(dom, substanceAdminNode, "classCode", "SBADM"); addAttribute(dom, substanceAdminNode, "moodCode", "INT"); Node seqNode = dom.createElement("doseQuantity"); addAttribute(dom, seqNode, "value", "1"); addAttribute(dom, seqNode, "unit", "1"); substanceAdminNode.appendChild(seqNode); substitutionNode.appendChild(substanceAdminNode); // changed quantity if (lines.get(0).getField21().equals(d_line.getField7())) { } // changed name if (lines.get(0).getField11().equals(d_line.getField2())) { } supply.appendChild(substitutionNode); } entry.appendChild(supply); dispSection.appendChild(entry); } } // copy author tag from eprescription XPathExpression authorExpr = xpath.compile("/ClinicalDocument/author"); Node oldAuthorNode = (Node) authorExpr.evaluate(dom, XPathConstants.NODE); Node newAuthorNode = oldAuthorNode.cloneNode(true); XPathExpression substExpr = xpath.compile( "/ClinicalDocument/component/structuredBody/component/section/entry/supply/entryRelationship/substanceAdministration"); NodeList substNodes = (NodeList) substExpr.evaluate(dom, XPathConstants.NODESET); XPathExpression entryRelExpr = xpath.compile( "/ClinicalDocument/component/structuredBody/component/section/entry/supply/entryRelationship/substanceAdministration/entryRelationship"); NodeList entryRelNodes = (NodeList) entryRelExpr.evaluate(dom, XPathConstants.NODESET); Node entryRelNode = (Node) entryRelExpr.evaluate(dom, XPathConstants.NODE); if (substNodes != null) { // for (int t=0; t<substNodes.getLength(); t++) // { int t = 0; Node substNode = substNodes.item(t); substNode.insertBefore(newAuthorNode, entryRelNode); // } } Transformer transformer = TransformerFactory.newInstance().newTransformer(); transformer.setOutputProperty(OutputKeys.INDENT, "yes"); //initialize StreamResult with File object to save to file StreamResult result = new StreamResult(new StringWriter()); DOMSource source = new DOMSource(dom); transformer.transform(source, result); String xmlString = result.getWriter().toString(); bytesED = xmlString.getBytes(); System.out.println(xmlString); } catch (Exception e) { _log.error(e.getMessage()); } return bytesED; }
From source file:be.ibridge.kettle.trans.step.xmlinput.XMLInput.java
private Row getRowFromXML() throws KettleValueException { while (data.itemPosition >= data.itemCount || data.file == null) // finished reading the file, read the next file! {//from w w w . j av a2s. co m data.file = null; if (!openNextFile()) { return null; } } Row row = buildEmptyRow(); // Get the item in the XML file... // First get the appropriate node Node itemNode; if (meta.getInputPosition().length > 1) { itemNode = XMLHandler.getSubNodeByNr(data.section, data.itemElement, data.itemPosition); } else { itemNode = data.section; // Only the root node, 1 element to read in the whole document. } data.itemPosition++; // Read from the Node... for (int i = 0; i < meta.getInputFields().length; i++) { Node node = itemNode; XMLInputField xmlInputField = meta.getInputFields()[i]; String value = null; for (int p = 0; (value == null) && node != null && p < xmlInputField.getFieldPosition().length; p++) { XMLInputFieldPosition pos = xmlInputField.getFieldPosition()[p]; switch (pos.getType()) { case XMLInputFieldPosition.XML_ELEMENT: { if (pos.getElementNr() <= 1) { Node subNode = XMLHandler.getSubNode(node, pos.getName()); if (subNode != null) { if (p == xmlInputField.getFieldPosition().length - 1) // last level { value = XMLHandler.getNodeValue(subNode); } } else { if (log.isDebug()) logDebug(Messages.getString("XMLInput.Log.UnableToFindPosition", pos.toString(), node.toString())); } node = subNode; } else // Multiple possible values: get number pos.getElementNr()! { Node subNode = XMLHandler.getSubNodeByNr(node, pos.getName(), pos.getElementNr() - 1, false); if (subNode != null) { if (p == xmlInputField.getFieldPosition().length - 1) // last level { value = XMLHandler.getNodeValue(subNode); } } else { if (log.isDebug()) logDebug(Messages.getString("XMLInput.Log.UnableToFindPosition", pos.toString(), node.toString())); } node = subNode; } } break; case XMLInputFieldPosition.XML_ATTRIBUTE: { value = XMLHandler.getTagAttribute(node, pos.getName()); } break; case XMLInputFieldPosition.XML_ROOT: { value = XMLHandler.getNodeValue(node); } break; default: break; } } // OK, we have the string... Value v = row.getValue(i); if (value != null) v.setValue(value); else v.setNull(); // DO Trimming! switch (xmlInputField.getTrimType()) { case XMLInputField.TYPE_TRIM_LEFT: v.ltrim(); break; case XMLInputField.TYPE_TRIM_RIGHT: v.rtrim(); break; case XMLInputField.TYPE_TRIM_BOTH: v.trim(); break; default: break; } // System.out.println("after trim, field #"+i+" : "+v); // DO CONVERSIONS... switch (xmlInputField.getType()) { case Value.VALUE_TYPE_STRING: // System.out.println("Convert value to String :"+v); break; case Value.VALUE_TYPE_NUMBER: // System.out.println("Convert value to Number :"+v); if (xmlInputField.getFormat() != null && xmlInputField.getFormat().length() > 0) { if (xmlInputField.getDecimalSymbol() != null && xmlInputField.getDecimalSymbol().length() > 0) { if (xmlInputField.getGroupSymbol() != null && xmlInputField.getGroupSymbol().length() > 0) { if (xmlInputField.getCurrencySymbol() != null && xmlInputField.getCurrencySymbol().length() > 0) { v.str2num(xmlInputField.getFormat(), xmlInputField.getGroupSymbol(), xmlInputField.getGroupSymbol(), xmlInputField.getCurrencySymbol()); } else { v.str2num(xmlInputField.getFormat(), xmlInputField.getGroupSymbol(), xmlInputField.getGroupSymbol()); } } else { v.str2num(xmlInputField.getFormat(), xmlInputField.getGroupSymbol()); } } else { v.str2num(xmlInputField.getFormat()); // just a format mask } } else { v.str2num(); } v.setLength(xmlInputField.getLength(), xmlInputField.getPrecision()); break; case Value.VALUE_TYPE_INTEGER: // System.out.println("Convert value to integer :"+v); v.setValue(v.getInteger()); v.setLength(xmlInputField.getLength(), xmlInputField.getPrecision()); break; case Value.VALUE_TYPE_BIGNUMBER: // System.out.println("Convert value to BigNumber :"+v); v.setValue(v.getBigNumber()); v.setLength(xmlInputField.getLength(), xmlInputField.getPrecision()); break; case Value.VALUE_TYPE_DATE: // System.out.println("Convert value to Date :"+v); if (xmlInputField.getFormat() != null && xmlInputField.getFormat().length() > 0) { v.str2dat(xmlInputField.getFormat()); } else { v.setValue(v.getDate()); } break; case Value.VALUE_TYPE_BOOLEAN: v.setValue(v.getBoolean()); break; default: break; } // Do we need to repeat this field if it is null? if (meta.getInputFields()[i].isRepeated()) { if (v.isNull() && data.previousRow != null) { Value previous = data.previousRow.getValue(i); v.setValue(previous); } } } // End of loop over fields... // See if we need to add the filename to the row... if (meta.includeFilename() && meta.getFilenameField() != null && meta.getFilenameField().length() > 0) { Value fn = new Value(meta.getFilenameField(), KettleVFS.getFilename(data.file)); row.addValue(fn); } // See if we need to add the row number to the row... if (meta.includeRowNumber() && meta.getRowNumberField() != null && meta.getRowNumberField().length() > 0) { Value fn = new Value(meta.getRowNumberField(), data.rownr); row.addValue(fn); } data.previousRow = new Row(row); // copy it to make sure the next step doesn't change it in between... data.rownr++; // Throw away the information in the item? NodeList nodeList = itemNode.getChildNodes(); for (int i = 0; i < nodeList.getLength(); i++) itemNode.removeChild(nodeList.item(i)); return row; }
From source file:nl.vumc.trait.oc.main.ImportODM.java
@Override public void runCmd() throws ParserConfigurationException, DatatypeConfigurationException, ODMException, OCConnectorException, SAXException, IOException { OCWebServices connector = OCWebServices.getInstance(connectInfo, debug, false); InputStream reader;/*from w w w . j ava2 s. c o m*/ if (file.equals("-")) { reader = System.in; } else { reader = new FileInputStream(file); } ClinicalODMResolver odm = new ClinicalODMResolver(documentBuilder.parse(reader), connector, true); odm.resolveOdmDocument(); Document odmDoc = odm.getOdm(); Node odmNode = odm.getOdm().getFirstChild(); // bulk load -- chop up into ClinicaDatas... NodeList clinicalDatas = odm.xPath(odmNode, "//ClinicalData"); for (int i = 0; i < clinicalDatas.getLength(); ++i) { odmNode.removeChild(clinicalDatas.item(i)); } for (int i = 0; i < clinicalDatas.getLength(); ++i) { odmNode.appendChild(clinicalDatas.item(i)); logger.debug("============================ setOdm start ================="); odm.setOdm(odmDoc); // important! logger.debug("Current ODM:\n" + odm.extraClean().toString()); logger.debug("============================ setOdm end ==================="); connector.importODM(odm.extraClean().toString()); odmNode.removeChild(clinicalDatas.item(i)); } }
From source file:org.adl.parsers.dom.ADLDOMParser.java
/** * Traverses the DOM Tree and removes Ignorable Whitespace Text Nodes and * Comment Text. The function also removes extension elements and * attributes that are not defined by SCORM. If extensions are found * the function also sets a flag stating that extensions are present in the * input XML instance./*ww w . j a v a 2s.com*/ * * @param iNode The node to be pruned of whitespace and comments<br> * @param iXMLFileName The XML file to be pruned */ private void pruneTree(Node iNode, String iXMLFileName) { String value; // is there anything to do? if (iNode == null) return; switch (iNode.getNodeType()) { case Node.PROCESSING_INSTRUCTION_NODE: { break; } case Node.DOCUMENT_NODE: { pruneTree(((Document) iNode).getDocumentElement(), iXMLFileName); break; } case Node.ELEMENT_NODE: { log.debug("Processing Element Node: [" + iNode.getLocalName() + "]"); log.debug("************************************************"); log.debug("Processing Element Node: [" + iNode.getLocalName() + "]"); checkForSchemaLocations(iNode, iXMLFileName); // Get the list of attributes of the element NamedNodeMap attrList = iNode.getAttributes(); // Loop over the attributes for this element, remove any attributes // that are extensions log.debug("Processing " + attrList.getLength() + " attributes"); for (int i = 0; i < attrList.getLength(); i++) { Attr currentAttribute = (Attr) attrList.item(i); if (!(DOMTreeUtility.isSCORMAppProfileNode(currentAttribute, iNode))) { log.debug("Extension attribute, removing: [" + currentAttribute.getNamespaceURI() + "] " + currentAttribute.getLocalName() + " from the its parent node [" + iNode.getNamespaceURI() + "] " + iNode.getLocalName()); // Remove the Element Node from the DOM attrList.removeNamedItemNS(currentAttribute.getNamespaceURI(), currentAttribute.getLocalName()); i--; mExtensionsFound = true; } else { log.debug("Valid SCORM attribute, keeping attribute: [" + currentAttribute.getNamespaceURI() + "] " + currentAttribute.getLocalName()); } } log.debug("Done processing attributes for node: [" + iNode.getNamespaceURI() + "] " + iNode.getLocalName()); log.debug("************************************************"); // Done looping over the attributes for this element, now loop over // the set of children nodes. log.debug(""); log.debug("************************************************"); log.debug("Processing direct-descendances for node: [" + iNode.getNamespaceURI() + "] " + iNode.getLocalName()); NodeList children = iNode.getChildNodes(); if (children != null) { // Loop over set of children elements for this element, remove // any elements that are extensions log.debug("Processing " + children.getLength() + " elements"); for (int z = 0; z < children.getLength(); z++) { Node childNode = children.item(z); if (childNode.getNodeType() == Node.ELEMENT_NODE) { log.debug("Processing element: [" + childNode + "]"); log.debug("Elements Namespace: [" + childNode.getNamespaceURI() + "]"); log.debug("Elements Parent Node: [" + iNode.getLocalName() + "]"); log.debug("Parent Nodes Namespace: [" + iNode.getNamespaceURI() + "]"); if (!(DOMTreeUtility.isSCORMAppProfileNode(children.item(z), children.item(z).getParentNode()))) { // Before we remove the element see if the elemen // contains any xsi:schemaLocations. We need // to add them to the list of schema locations for // parsing checkForSchemaLocations(childNode, iXMLFileName); log.debug("Extension Element Found, removing from DOM Tree "); // Remove the Element Node from the DOM children.item(z).getParentNode().removeChild(children.item(z)); z--; mExtensionsFound = true; } else { log.debug("ADL SCORM Element Found, leaving " + "element in DOM Tree"); pruneTree(children.item(z), iXMLFileName); } } // end if NodeType == ELEMENT_NODE if (childNode instanceof TextImpl) { value = children.item(z).getNodeValue().trim(); if (((TextImpl) children.item(z)).isIgnorableWhitespace()) { iNode.removeChild(children.item(z)); z--; } else if (value.length() == 0) { iNode.removeChild(children.item(z)); z--; } } else if (children.item(z).getNodeType() == Node.COMMENT_NODE) { iNode.removeChild(children.item(z)); z--; } } // end looping over children nodes } // end if there are children log.debug("Done processing direct-descendants for node: [" + iNode.getNamespaceURI() + "] " + iNode.getLocalName()); log.debug("**************************************************"); break; } // handle entity reference nodes case Node.ENTITY_REFERENCE_NODE: { NodeList children = iNode.getChildNodes(); if (children != null) { int len = children.getLength(); for (int i = 0; i < len; i++) { pruneTree(children.item(i), iXMLFileName); } } break; } // text case Node.COMMENT_NODE: { break; } case Node.CDATA_SECTION_NODE: { break; } case Node.TEXT_NODE: { break; } default: { break; } } }
From source file:org.apache.cayenne.xml.XMLUtil.java
/** * Moves all children of the oldParent to the newParent *//*w ww. ja va2s . co m*/ static List<Element> replaceParent(Node oldParent, Node newParent) { List<Element> children = XMLUtil.getChildren(oldParent); for (Node child : children) { oldParent.removeChild(child); newParent.appendChild(child); } return children; }
From source file:org.apache.cocoon.xml.dom.DOMUtil.java
/** * Set the value of the DOM node.// www.j av a 2s.com * All current children of the node are removed and a new text node * with the value is appended. */ public static void setValueOfNode(Node node, String value) { if (node.getNodeType() == Node.ATTRIBUTE_NODE) { node.setNodeValue(value); } else { while (node.hasChildNodes() == true) { node.removeChild(node.getFirstChild()); } node.appendChild(node.getOwnerDocument().createTextNode(value)); } }
From source file:org.apache.cocoon.xml.dom.DOMUtil.java
/** * Get a document fragment from a <code>Reader</code>. * The reader must provide valid XML, but it is allowed that the XML * has more than one root node. This xml is parsed by the * specified parser instance and a DOM DocumentFragment is created. */// ww w . java 2 s.c o m public static DocumentFragment getDocumentFragment(SAXParser parser, Reader stream) throws ProcessingException { DocumentFragment frag = null; Writer writer; Reader reader; boolean removeRoot = true; try { // create a writer, // write the root element, then the input from the // reader writer = new StringWriter(); writer.write(XML_ROOT_DEFINITION); char[] cbuf = new char[16384]; int len; do { len = stream.read(cbuf, 0, 16384); if (len != -1) { writer.write(cbuf, 0, len); } } while (len != -1); writer.write("</root>"); // now test if xml input start with <?xml String xml = writer.toString(); String searchString = XML_ROOT_DEFINITION + "<?xml "; if (xml.startsWith(searchString) == true) { // now remove the surrounding root element xml = xml.substring(XML_ROOT_DEFINITION.length(), xml.length() - 7); removeRoot = false; } reader = new StringReader(xml); InputSource input = new InputSource(reader); DOMBuilder builder = new DOMBuilder(); builder.startDocument(); builder.startElement("", "root", "root", XMLUtils.EMPTY_ATTRIBUTES); IncludeXMLConsumer filter = new IncludeXMLConsumer(builder, builder); parser.parse(input, filter); builder.endElement("", "root", "root"); builder.endDocument(); // Create Document Fragment, remove <root> final Document doc = builder.getDocument(); frag = doc.createDocumentFragment(); final Node root = doc.getDocumentElement().getFirstChild(); root.normalize(); if (removeRoot == false) { root.getParentNode().removeChild(root); frag.appendChild(root); } else { Node child; while (root.hasChildNodes() == true) { child = root.getFirstChild(); root.removeChild(child); frag.appendChild(child); } } } catch (SAXException sax) { throw new ProcessingException("SAXException: " + sax, sax); } catch (IOException ioe) { throw new ProcessingException("IOException: " + ioe, ioe); } return frag; }
From source file:org.apache.ode.bpel.rtrep.v1.ASSIGN.java
/** * isInsert flag desginates this as an 'element' type insertion, which * requires insert the actual element value, rather than it's children * * @return// w w w . j ava 2s . com * @throws FaultException */ private Node replaceContent(Node lvalue, Node lvaluePtr, String rvalue) throws FaultException { Document d = lvaluePtr.getOwnerDocument(); if (__log.isDebugEnabled()) { __log.debug("lvaluePtr type " + lvaluePtr.getNodeType()); __log.debug("lvaluePtr " + DOMUtils.domToString(lvaluePtr)); __log.debug("lvalue " + lvalue); __log.debug("rvalue " + rvalue); } switch (lvaluePtr.getNodeType()) { case Node.ELEMENT_NODE: // Remove all the children. while (lvaluePtr.hasChildNodes()) lvaluePtr.removeChild(lvaluePtr.getFirstChild()); // Append a new text node. lvaluePtr.appendChild(d.createTextNode(rvalue)); // If lvalue is a text, removing all lvaluePtr children had just removed it // so we need to rebuild it as a child of lvaluePtr if (lvalue instanceof Text) lvalue = lvaluePtr.getFirstChild(); break; case Node.TEXT_NODE: Node newval = d.createTextNode(rvalue); // Replace ourselves . lvaluePtr.getParentNode().replaceChild(newval, lvaluePtr); // A little kludge, let our caller know that the root element has changed. // (used for assignment to a simple typed variable) if (lvalue.getNodeType() == Node.ELEMENT_NODE) { // No children, adding an empty text children to point to if (lvalue.getFirstChild() == null) { Text txt = lvalue.getOwnerDocument().createTextNode(""); lvalue.appendChild(txt); } if (lvalue.getFirstChild().getNodeType() == Node.TEXT_NODE) lvalue = lvalue.getFirstChild(); } if (lvalue.getNodeType() == Node.TEXT_NODE && ((Text) lvalue).getWholeText().equals(((Text) lvaluePtr).getWholeText())) lvalue = lvaluePtr = newval; break; case Node.ATTRIBUTE_NODE: ((Attr) lvaluePtr).setValue(rvalue); break; default: // This could occur if the expression language selects something // like // a PI or a CDATA. String msg = __msgs.msgInvalidLValue(); if (__log.isDebugEnabled()) __log.debug(lvaluePtr + ": " + msg); throw new FaultException(getOAsssign().getOwner().constants.qnSelectionFailure, msg); } return lvalue; }
From source file:org.apache.ode.bpel.rtrep.v2.AssignHelper.java
/** * isInsert flag desginates this as an 'element' type insertion, which * requires insert the actual element value, rather than it's children * (madars.vitolins _at gmail.com - 2009.04.17 - moved from ASSIGN here) * @return//from w w w . j av a 2 s. c o m * @throws FaultException */ public Node replaceContent(Node lvalue, Node lvaluePtr, String rvalue) throws FaultException { Document d = lvaluePtr.getOwnerDocument(); if (__log.isDebugEnabled()) { __log.debug("lvaluePtr type " + lvaluePtr.getNodeType()); __log.debug("lvaluePtr " + DOMUtils.domToString(lvaluePtr)); __log.debug("lvalue " + lvalue); __log.debug("rvalue " + rvalue); } switch (lvaluePtr.getNodeType()) { case Node.ELEMENT_NODE: // Remove all the children. while (lvaluePtr.hasChildNodes()) lvaluePtr.removeChild(lvaluePtr.getFirstChild()); // Append a new text node. lvaluePtr.appendChild(d.createTextNode(rvalue)); // If lvalue is a text, removing all lvaluePtr children had just removed it // so we need to rebuild it as a child of lvaluePtr if (lvalue instanceof Text) lvalue = lvaluePtr.getFirstChild(); break; case Node.TEXT_NODE: Node newval = d.createTextNode(rvalue); // Replace ourselves . lvaluePtr.getParentNode().replaceChild(newval, lvaluePtr); // A little kludge, let our caller know that the root element has changed. // (used for assignment to a simple typed variable) if (lvalue.getNodeType() == Node.ELEMENT_NODE) { // No children, adding an empty text children to point to if (lvalue.getFirstChild() == null) { Text txt = lvalue.getOwnerDocument().createTextNode(""); lvalue.appendChild(txt); } if (lvalue.getFirstChild().getNodeType() == Node.TEXT_NODE) lvalue = lvalue.getFirstChild(); } if (lvalue.getNodeType() == Node.TEXT_NODE && ((Text) lvalue).getWholeText().equals(((Text) lvaluePtr).getWholeText())) lvalue = lvaluePtr = newval; break; case Node.ATTRIBUTE_NODE: ((Attr) lvaluePtr).setValue(rvalue); break; default: // This could occur if the expression language selects something // like // a PI or a CDATA. String msg = __msgs.msgInvalidLValue(); if (__log.isDebugEnabled()) __log.debug(lvaluePtr + ": " + msg); throw new FaultException(getOActivity().getOwner().constants.qnSelectionFailure, msg); } return lvalue; }