au.org.theark.geno.web.component.table.GenoTableContainerPanel.java Source code

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Here is the source code for au.org.theark.geno.web.component.table.GenoTableContainerPanel.java

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/*******************************************************************************
 * Copyright (c) 2011  University of Western Australia. All rights reserved.
 * 
 * This file is part of The Ark.
 * 
 * The Ark is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 3
 * of the License, or (at your option) any later version.
 * 
 * The Ark is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 ******************************************************************************/
package au.org.theark.geno.web.component.table;

import java.util.ArrayList;
import java.util.Collection;

import org.apache.shiro.SecurityUtils;
import org.apache.wicket.markup.html.WebMarkupContainer;
import org.apache.wicket.model.CompoundPropertyModel;
import org.apache.wicket.spring.injection.annot.SpringBean;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import au.org.theark.core.exception.ArkSystemException;
import au.org.theark.core.exception.EntityNotFoundException;
import au.org.theark.core.model.geno.entity.Row;
import au.org.theark.core.model.study.entity.Person;
import au.org.theark.core.model.study.entity.Study;
import au.org.theark.core.service.IArkCommonService;
import au.org.theark.core.web.component.AbstractContainerPanel;
import au.org.theark.geno.model.vo.RowListVO;
import au.org.theark.geno.model.vo.RowVO;
import au.org.theark.geno.service.IArkGenoService;
import au.org.theark.geno.web.component.table.form.ContainerForm;
import au.org.theark.study.service.IStudyService;

/**
 * @author gecgooden
 * 
 */
public class GenoTableContainerPanel extends AbstractContainerPanel<RowListVO> {

    private static final long serialVersionUID = 2166285054533611912L;
    private static final Logger log = LoggerFactory.getLogger(GenoTableContainerPanel.class);
    private DetailPanel detailPanel;
    private ContainerForm containerForm;

    private WebMarkupContainer arkContextMarkup;
    @SpringBean(name = au.org.theark.core.Constants.ARK_COMMON_SERVICE)
    private IArkCommonService iArkCommonService;

    @SpringBean(name = "arkGenoService")
    private IArkGenoService iArkGenoService;

    @SpringBean(name = au.org.theark.core.Constants.STUDY_SERVICE)
    private IStudyService studyService;

    private Long sessionStudyId;
    private Long sessionPersonId;
    protected WebMarkupContainer studyNameMarkup;
    protected WebMarkupContainer studyLogoMarkup;
    protected WebMarkupContainer resultsWmc = new WebMarkupContainer("resultsWmc");

    /**
     * @param id
     * @param studyLogoMarkup 
     * @param studyNameMarkup 
     */
    public GenoTableContainerPanel(String id, WebMarkupContainer arkContextMarkup,
            WebMarkupContainer studyNameMarkup, WebMarkupContainer studyLogoMarkup) {
        super(id);
        this.arkContextMarkup = arkContextMarkup;
        this.studyNameMarkup = studyNameMarkup;
        this.studyLogoMarkup = studyLogoMarkup;
        this.setOutputMarkupId(true);

        /* Initialise the CPM */
        cpModel = new CompoundPropertyModel<RowListVO>(new RowListVO());

        containerForm = new ContainerForm("containerForm", cpModel);
        containerForm.add(initialiseFeedBackPanel());

        prerenderContextCheck();

        initialiseModelObject();
        containerForm.add(initialiseDetailPanel());

        add(containerForm);
    }

    protected void initialiseModelObject() {
        if (sessionPersonId != null && sessionStudyId != null) {
            Person person = null;
            try {
                person = studyService.getPerson(sessionPersonId);
            } catch (EntityNotFoundException e) {
                e.printStackTrace();
            } catch (ArkSystemException e) {
                e.printStackTrace();
            }
            Study study = iArkCommonService.getStudy(sessionStudyId);
            if (person != null && study != null) {
                Collection<RowVO> rowVOs = new ArrayList<RowVO>();
                for (Row r : iArkGenoService.getGenoTableRows(study)) {
                    rowVOs.add(new RowVO(r));
                }
                RowListVO rowListVO = new RowListVO(rowVOs);
                log.info(rowListVO.toString());
                containerForm.setModelObject(rowListVO);
            }
        }
    }

    @SuppressWarnings("unchecked")
    protected void prerenderContextCheck() {
        sessionPersonId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID);
        sessionStudyId = (Long) SecurityUtils.getSubject().getSession()
                .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID);

        if ((sessionStudyId != null) && (sessionPersonId != null)) {
            String sessionPersonType = (String) SecurityUtils.getSubject().getSession()
                    .getAttribute(au.org.theark.core.Constants.PERSON_TYPE);

            if (sessionPersonType.equals(au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) {
                Person person;
                boolean contextLoaded = false;
                try {
                    person = studyService.getPerson(sessionPersonId);
                    Study study = iArkCommonService.getStudy(sessionStudyId);
                    contextLoaded = true;
                } catch (EntityNotFoundException e) {
                    log.error(e.getMessage());
                } catch (ArkSystemException e) {
                    log.error(e.getMessage());
                }
                if (contextLoaded) {
                    arkCrudContainerVO.getDetailPanelContainer().setVisible(true);
                }
            }
        }
    }

    protected WebMarkupContainer initialiseDetailPanel() {
        detailPanel = new DetailPanel("detailPanel", feedBackPanel, arkContextMarkup, containerForm,
                arkCrudContainerVO);
        add(detailPanel);
        arkCrudContainerVO.getDetailPanelContainer().add(detailPanel);
        return arkCrudContainerVO.getDetailPanelContainer();
    }

    @Override
    protected WebMarkupContainer initialiseSearchResults() {
        return null;
    }

    @Override
    protected WebMarkupContainer initialiseSearchPanel() {
        return null;
    }
}