be.ugent.intec.halvade.uploader.mapreduce.BamIdSortComparator.java Source code

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Here is the source code for be.ugent.intec.halvade.uploader.mapreduce.BamIdSortComparator.java

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package be.ugent.intec.halvade.uploader.mapreduce;

import org.apache.hadoop.io.WritableComparable;
import org.apache.hadoop.io.WritableComparator;

/**
 *
 * @author dries
 */
public class BamIdSortComparator extends WritableComparator {
    protected BamIdSortComparator() {
        super(PairedIdWritable.class, true);
    }

    @Override
    public int compare(WritableComparable a, WritableComparable b) {
        PairedIdWritable r1 = (PairedIdWritable) a;
        PairedIdWritable r2 = (PairedIdWritable) b;

        return r1.getId().compareTo(r2.getId());
    }
}