co.nubetech.hiho.dedup.TestDedupJob.java Source code

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/**
 * Copyright 2011 Nube Technologies
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software distributed
 * under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR
 * CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and limitations under the License.
 */
package co.nubetech.hiho.dedup;

import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.DoubleWritable;
import org.apache.hadoop.io.IOUtils;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.LongWritable;
import org.apache.hadoop.io.SequenceFile;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.Writable;
import org.apache.hadoop.util.ReflectionUtils;
import org.apache.hadoop.util.ToolRunner;
import org.apache.log4j.Logger;
import org.junit.Test;

import co.nubetech.hiho.common.HIHOException;
import co.nubetech.hiho.common.HihoTestCase;
import co.nubetech.hiho.testdata.Student;

public class TestDedupJob extends HihoTestCase {
    final static Logger logger = Logger.getLogger(co.nubetech.hiho.dedup.TestDedupJob.class);

    @Test
    public void testCheckMandatoryConfsValidValues() throws HIHOException {
        String[] args = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-dedupBy", "key",
                "-inputKeyClassName", "org.apache.hadoop.io.IntWritable", "-inputValueClassName",
                "org.apache.hadoop.io.Text", "-inputPath", "testData/dedup/inputForSeqTest", "-outputPath",
                "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(args);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInInputFormat() throws HIHOException {
        String[] arg = new String[] { "-dedupBy", "key", "-inputKeyClassName", "org.apache.hadoop.io.IntWritable",
                "-inputValueClassName", "org.apache.hadoop.io.Text", "-inputPath", "testData/dedup/inputForSeqTest",
                "-outputPath", "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInDedupBy() throws HIHOException {
        String[] arg = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-inputKeyClassName",
                "org.apache.hadoop.io.IntWritable", "-inputValueClassName", "org.apache.hadoop.io.Text",
                "-inputPath", "testData/dedup/inputForSeqTest", "-outputPath", "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInInputKeyClassName() throws HIHOException {
        String[] arg = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-dedupBy", "key",
                "-inputValueClassName", "org.apache.hadoop.io.Text", "-inputPath", "testData/dedup/inputForSeqTest",
                "-outputPath", "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInInputValueClassName() throws HIHOException {
        String[] arg = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-dedupBy", "key",
                "-inputKeyClassName", "org.apache.hadoop.io.IntWritable", "-inputPath",
                "testData/dedup/inputForSeqTest", "-outputPath", "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInInputPath() throws HIHOException {
        String[] arg = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-dedupBy", "key",
                "-inputKeyClassName", "org.apache.hadoop.io.IntWritable", "-inputValueClassName",
                "org.apache.hadoop.io.Text", "-outputPath", "output" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    @Test(expected = HIHOException.class)
    public void testCheckMandatoryConfsForExpectedExceptionInOutputPath() throws HIHOException {
        String[] arg = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-dedupBy", "key",
                "-inputKeyClassName", "org.apache.hadoop.io.IntWritable", "-inputValueClassName",
                "org.apache.hadoop.io.Text", "-inputPath", "testData/dedup/inputForSeqTest" };
        DedupJob dedupJob = new DedupJob();
        dedupJob.populateConfiguration(arg);
        dedupJob.checkMandatoryConfs();
    }

    public DedupJob runDedupJob(String[] args) throws Exception {
        DedupJob job = new DedupJob();
        int res = ToolRunner.run(createJobConf(), job, args);
        assertEquals(0, res);
        return job;
    }

    @Test
    public void testDedupByValueWithDelimitedTextInputFormat() throws Exception {
        final String inputData1 = "Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney\n"
                + "Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein\n"
                + "Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson";
        final String inputData2 = "Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos\n"
                + "Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein\n"
                + "Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson";
        createTextFileInHDFS(inputData1, "/input1", "testFile1.txt");
        createTextFileInHDFS(inputData2, "/input2", "testFile2.txt");
        String[] args = new String[] { "-inputFormat", "co.nubetech.hiho.dedup.DelimitedTextInputFormat",
                "-inputKeyClassName", "org.apache.hadoop.io.Text", "-inputValueClassName",
                "org.apache.hadoop.io.Text", "-inputPath", "/input1,/input2", "-outputPath", "output", "-delimeter",
                ",", "-column", "1", "-dedupBy", "value" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(5, job.getOutput());
        assertEquals(1, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output");
        FileStatus[] status = outputFS.listStatus(outputPath, getOutputPathFilter());
        assertTrue(outputFS.exists(outputPath));
        List<String> expectedOutput = new ArrayList<String>();
        expectedOutput.add("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney");
        expectedOutput.add("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos");
        expectedOutput.add("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein");
        expectedOutput.add("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson");
        expectedOutput.add("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson");
        int count = 0;
        for (FileStatus fileStat : status) {
            logger.debug("File status is " + fileStat.getPath() + " and is it a dir? " + fileStat.isDirectory());
            FSDataInputStream in = outputFS.open(fileStat.getPath());
            String line = null;
            while ((line = in.readLine()) != null) {
                logger.debug("Output is " + line);
                assertTrue("Matched output " + line, expectedOutput.contains(line));
                expectedOutput.remove(line);
                count++;
            }
            in.close();
        }
        assertEquals(5, count);
    }

    @Test
    public void testDedupByValueWithTextInputFormat() throws Exception {
        final String inputData1 = "Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney\n"
                + "Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein\n"
                + "Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson";
        final String inputData2 = "Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos\n"
                + "Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein\n"
                + "Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson";
        createTextFileInHDFS(inputData1, "/input1", "testFile1.txt");
        createTextFileInHDFS(inputData2, "/input2", "testFile2.txt");
        String[] args = new String[] { "-inputFormat", "org.apache.hadoop.mapreduce.lib.input.TextInputFormat",
                "-inputPath", "/input1,/input2", "-outputPath", "output", "-outputFormat",
                "co.nubetech.hiho.mapreduce.lib.output.NoKeyOnlyValueOutputFormat", "-dedupBy", "value" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(5, job.getOutput());
        assertEquals(1, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output");
        FileStatus[] status = outputFS.listStatus(outputPath, getOutputPathFilter());
        assertTrue(outputFS.exists(outputPath));
        List<String> expectedOutput = new ArrayList<String>();
        expectedOutput.add("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney");
        expectedOutput.add("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos");
        expectedOutput.add("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein");
        expectedOutput.add("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson");
        expectedOutput.add("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson");
        int count = 0;
        for (FileStatus fileStat : status) {
            logger.debug("File status is " + fileStat.getPath() + " and is it a dir? " + fileStat.isDirectory());
            FSDataInputStream in = outputFS.open(fileStat.getPath());
            String line = null;
            while ((line = in.readLine()) != null) {
                logger.debug("Output is " + line);
                assertTrue("Matched output " + line, expectedOutput.contains(line));
                expectedOutput.remove(line);
                count++;
            }
            in.close();
        }
        assertEquals(5, count);
    }

    @Test
    public void testDedupByIntWritableKeyWithSequenceFileInputFormat() throws Exception {
        HashMap<IntWritable, Text> inputData1 = new HashMap<IntWritable, Text>();
        inputData1.put(new IntWritable(1),
                new Text("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney"));
        inputData1.put(new IntWritable(2),
                new Text("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson"));
        inputData1.put(new IntWritable(3),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData1, "/input1", "testFile1.seq");

        HashMap<IntWritable, Text> inputData2 = new HashMap<IntWritable, Text>();
        inputData2.put(new IntWritable(1),
                new Text("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos"));
        inputData2.put(new IntWritable(2),
                new Text("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson"));
        inputData2.put(new IntWritable(4),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData2, "/input2", "testFile2.seq");

        String[] args = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-inputPath", "/input1,/input2",
                "-outputPath", "output", "-inputKeyClassName", "org.apache.hadoop.io.IntWritable",
                "-inputValueClassName", "org.apache.hadoop.io.Text", "-dedupBy", "key" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(4, job.getOutput());
        assertEquals(2, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output/part-r-00000");
        Configuration conf = new Configuration();
        SequenceFile.Reader reader = new SequenceFile.Reader(outputFS, outputPath, conf);
        Writable writableKey = (Writable) ReflectionUtils.newInstance(reader.getKeyClass(), conf);
        Writable writableValue = (Writable) ReflectionUtils.newInstance(reader.getValueClass(), conf);
        List<IntWritable> expectedOutput = new ArrayList<IntWritable>();
        expectedOutput.add(new IntWritable(1));
        expectedOutput.add(new IntWritable(2));
        expectedOutput.add(new IntWritable(3));
        expectedOutput.add(new IntWritable(4));
        int count = 0;
        while (reader.next(writableKey, writableValue)) {
            logger.debug("key and value is: " + writableKey + ", " + writableValue);
            assertTrue("Matched output " + writableKey, expectedOutput.contains(writableKey));
            count++;
        }
        IOUtils.closeStream(reader);
        assertEquals(4, count);
    }

    @Test
    public void testDedupByValueWithSequenceFileInputFormat() throws Exception {
        HashMap<IntWritable, Text> inputData1 = new HashMap<IntWritable, Text>();
        inputData1.put(new IntWritable(1),
                new Text("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney"));
        inputData1.put(new IntWritable(2),
                new Text("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson"));
        inputData1.put(new IntWritable(3),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData1, "/input1", "testFile1.seq");

        HashMap<IntWritable, Text> inputData2 = new HashMap<IntWritable, Text>();
        inputData2.put(new IntWritable(1),
                new Text("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos"));
        inputData2.put(new IntWritable(2),
                new Text("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson"));
        inputData2.put(new IntWritable(4),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData2, "/input2", "testFile2.seq");

        String[] args = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-inputPath", "/input1,/input2",
                "-outputPath", "output", "-inputKeyClassName", "org.apache.hadoop.io.IntWritable",
                "-inputValueClassName", "org.apache.hadoop.io.Text", "-dedupBy", "value" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(5, job.getOutput());
        assertEquals(1, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output/part-r-00000");
        Configuration conf = new Configuration();
        SequenceFile.Reader reader = new SequenceFile.Reader(outputFS, outputPath, conf);
        Writable writableKey = (Writable) ReflectionUtils.newInstance(reader.getKeyClass(), conf);
        Writable writableValue = (Writable) ReflectionUtils.newInstance(reader.getValueClass(), conf);
        List<Text> expectedOutput = new ArrayList<Text>();
        expectedOutput.add(new Text("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney"));
        expectedOutput.add(new Text("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson"));
        expectedOutput.add(new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        expectedOutput.add(new Text("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos"));
        expectedOutput.add(new Text("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson"));
        int count = 0;
        while (reader.next(writableKey, writableValue)) {
            logger.debug("key and value is: " + writableKey + ", " + writableValue);
            assertTrue("Matched output " + writableValue, expectedOutput.contains(writableValue));
            count++;
        }
        IOUtils.closeStream(reader);
        assertEquals(5, count);
    }

    @Test
    public void testDedupByLongWritableKeyWithSequenceFileInputFormat() throws Exception {
        HashMap<LongWritable, Text> inputData1 = new HashMap<LongWritable, Text>();
        inputData1.put(new LongWritable(1),
                new Text("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney"));
        inputData1.put(new LongWritable(2),
                new Text("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson"));
        inputData1.put(new LongWritable(3),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData1, "/input1", "testFile1.seq");

        HashMap<LongWritable, Text> inputData2 = new HashMap<LongWritable, Text>();
        inputData2.put(new LongWritable(1),
                new Text("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos"));
        inputData2.put(new LongWritable(2),
                new Text("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson"));
        inputData2.put(new LongWritable(4),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData2, "/input2", "testFile2.seq");

        String[] args = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat", "-inputPath", "/input1,/input2",
                "-outputPath", "output", "-inputKeyClassName", "org.apache.hadoop.io.LongWritable",
                "-inputValueClassName", "org.apache.hadoop.io.Text", "-dedupBy", "key" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(4, job.getOutput());
        assertEquals(2, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output/part-r-00000");
        Configuration conf = new Configuration();
        SequenceFile.Reader reader = new SequenceFile.Reader(outputFS, outputPath, conf);
        Writable writableKey = (Writable) ReflectionUtils.newInstance(reader.getKeyClass(), conf);
        Writable writableValue = (Writable) ReflectionUtils.newInstance(reader.getValueClass(), conf);
        List<LongWritable> expectedOutput = new ArrayList<LongWritable>();
        expectedOutput.add(new LongWritable(1));
        expectedOutput.add(new LongWritable(2));
        expectedOutput.add(new LongWritable(3));
        expectedOutput.add(new LongWritable(4));
        int count = 0;
        while (reader.next(writableKey, writableValue)) {
            logger.debug("key and value is: " + writableKey + ", " + writableValue);
            assertTrue("Matched output " + writableKey, expectedOutput.contains(writableKey));
            count++;
        }
        IOUtils.closeStream(reader);
        assertEquals(4, count);
    }

    @Test
    public void testDedupByValueWithSequenceFileAsTextInputFormat() throws Exception {
        HashMap<Text, Text> inputData1 = new HashMap<Text, Text>();
        inputData1.put(new Text("1"),
                new Text("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney"));
        inputData1.put(new Text("2"),
                new Text("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson"));
        inputData1.put(new Text("3"),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData1, "/input1", "testFile1.seq");

        HashMap<Text, Text> inputData2 = new HashMap<Text, Text>();
        inputData2.put(new Text("1"),
                new Text("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos"));
        inputData2.put(new Text("2"),
                new Text("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson"));
        inputData2.put(new Text("4"),
                new Text("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein"));
        createSequenceFileInHdfs(inputData2, "/input2", "testFile2.seq");

        String[] args = new String[] { "-inputFormat",
                "org.apache.hadoop.mapreduce.lib.input.SequenceFileAsTextInputFormat", "-outputFormat",
                "co.nubetech.hiho.mapreduce.lib.output.NoKeyOnlyValueOutputFormat", "-inputPath", "/input1,/input2",
                "-outputPath", "output", "-inputKeyClassName", "org.apache.hadoop.io.Text", "-inputValueClassName",
                "org.apache.hadoop.io.Text", "-dedupBy", "value" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(5, job.getOutput());
        assertEquals(1, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output");
        FileStatus[] status = outputFS.listStatus(outputPath, getOutputPathFilter());
        assertTrue(outputFS.exists(outputPath));
        List<String> expectedOutput = new ArrayList<String>();
        expectedOutput.add("Xavier Wilson,Mason Holloway,Carlos Johnston,Martin Noel,Drake Mckinney");
        expectedOutput.add("Kennedy Bailey,Jerome Perry,David Cabrera,Edan Fleming,Orlando Tyson");
        expectedOutput.add("Drake Mckinney,Murphy Baird,Theodore Lindsey,Nehru Wilcox,Harper Klein");
        expectedOutput.add("Zephania Bauer,Jermaine Gordon,Vincent Moon,Steven Pierce,Jasper Campos");
        expectedOutput.add("Kennedy Bailey,Plato Atkinson,Stuart Guy,Rooney Levy,Judah Benson");
        int count = 0;
        for (FileStatus fileStat : status) {
            logger.debug("File status is " + fileStat.getPath() + " and is it a dir? " + fileStat.isDirectory());
            FSDataInputStream in = outputFS.open(fileStat.getPath());
            String line = null;
            while ((line = in.readLine()) != null) {
                logger.debug("Output is " + line);
                assertTrue("Matched output " + line, expectedOutput.contains(line));
                expectedOutput.remove(line);
                count++;
            }
            in.close();
        }
        assertEquals(5, count);
    }

    @Test
    public void testDedupByCustomObjectKeyWithSequenceFileInputFormat() throws Exception {
        Student student1 = setStudent(new Text("Sam"), new Text("US"), new IntWritable(1),
                new LongWritable(9999999998l), new DoubleWritable(99.12));
        Student student2 = setStudent(new Text("John"), new Text("AUS"), new IntWritable(2),
                new LongWritable(9999999999l), new DoubleWritable(90.12));
        Student student3 = setStudent(new Text("Mary"), new Text("UK"), new IntWritable(3),
                new LongWritable(9999999988l), new DoubleWritable(69.12));
        Student student4 = setStudent(new Text("Kelvin"), new Text("UK"), new IntWritable(4),
                new LongWritable(9999998888l), new DoubleWritable(59.12));

        HashMap<Student, Text> inputData1 = new HashMap<Student, Text>();
        inputData1.put(student1, new Text("Macon Kent,6269 Aenean St.,1-247-399-1051,08253"));
        inputData1.put(student2, new Text("Dale Zamora,521-7792 Mauris Rd.,1-214-625-6970,90510"));
        inputData1.put(student3, new Text("Charles Wood,525-9709 In Rd.,1-370-528-4758,62714"));
        createSequenceFileInHdfs(inputData1, "/input1", "testFile1.seq");

        HashMap<Student, Text> inputData2 = new HashMap<Student, Text>();
        inputData2.put(student2, new Text("Austin Farley,4794 Donec Ave,1-230-823-8164,13508"));
        inputData2.put(student3, new Text("Macaulay Jackson,5435 Dui. Avenue,1-770-395-6446,31584"));
        inputData2.put(student4, new Text("Timon Leonard,716 Ac Ave,1-857-935-3882,62240"));
        createSequenceFileInHdfs(inputData2, "/input2", "testFile2.seq");

        String[] args = new String[] { "-inputPath", "/input1,/input2", "-outputPath", "output", "-dedupBy", "key",
                "-inputFormat", "org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat",
                "-inputKeyClassName", "co.nubetech.hiho.testdata.Student", "-inputValueClassName",
                "org.apache.hadoop.io.Text" };
        DedupJob job = runDedupJob(args);
        assertEquals(6, job.getTotalRecordsRead());
        assertEquals(0, job.getBadRecords());
        assertEquals(4, job.getOutput());
        assertEquals(2, job.getDuplicateRecords());

        FileSystem outputFS = getFileSystem();
        Path outputPath = new Path(outputFS.getHomeDirectory(), "output/part-r-00000");
        Configuration conf = new Configuration();
        SequenceFile.Reader reader = new SequenceFile.Reader(outputFS, outputPath, conf);
        Writable writableKey = (Writable) ReflectionUtils.newInstance(reader.getKeyClass(), conf);
        Writable writableValue = (Writable) ReflectionUtils.newInstance(reader.getValueClass(), conf);
        List<Student> expectedOutput = new ArrayList<Student>();
        expectedOutput.add(student1);
        expectedOutput.add(student2);
        expectedOutput.add(student3);
        expectedOutput.add(student4);
        int count = 0;
        while (reader.next(writableKey, writableValue)) {
            logger.debug("key and value is: " + writableKey + ", " + writableValue);
            assertTrue("Matched output " + writableKey, expectedOutput.contains(writableKey));
            count++;
        }
        IOUtils.closeStream(reader);
        assertEquals(4, count);
    }

    public Student setStudent(Text name, Text address, IntWritable id, LongWritable mobNumber, DoubleWritable per) {
        Student student = new Student();
        student.setName(name);
        student.setAddress(address);
        student.setId(id);
        student.setMobileNumber(mobNumber);
        student.setPercentage(per);
        return student;
    }

}