com.aliasi.lingmed.test.functional.medline.TestDateSearch.java Source code

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Here is the source code for com.aliasi.lingmed.test.functional.medline.TestDateSearch.java

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/*
 * LingPipe v. 2.0
 * Copyright (C) 2003-5 Alias-i
 *
 * This program is licensed under the Alias-i Royalty Free License
 * Version 1 WITHOUT ANY WARRANTY, without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the Alias-i
 * Royalty Free License Version 1 for more details.
 *
 * You should have received a copy of the Alias-i Royalty Free License
 * Version 1 along with this program; if not, visit
 * http://www.alias-i.com/lingpipe/licenseV1.txt or contact
 * Alias-i, Inc. at 181 North 11th Street, Suite 401, Brooklyn, NY 11211,
 * +1 (718) 290-9170.
 */

package com.aliasi.lingmed.test.functional.medline;

import com.aliasi.lingmed.dao.*;
import com.aliasi.lingmed.entrezgene.*;
import com.aliasi.lingmed.medline.*;
import com.aliasi.lingmed.server.*;

import com.aliasi.lingmed.medline.parser.*;

import java.io.*;

import org.apache.lucene.search.IndexSearcher;
import org.apache.lucene.search.Searcher;
import org.apache.lucene.store.FSDirectory;

import org.apache.log4j.Logger;

public class TestDateSearch {

    public static void main(String[] args) throws Exception {
        File luceneDir = new File(args[0]);
        Searcher medlineLocalSearcher = new IndexSearcher(FSDirectory.getDirectory(luceneDir));
        MedlineSearcher medlineSearcher = new MedlineSearcherImpl(new MedlineCodec(), medlineLocalSearcher);

        System.out.println("test1a: citations between 1985-1985");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("1985", "1985");
            System.out.println("citations in 1985: " + hits.size());
            for (MedlineCitation hit : hits) {
                PubDate pubDate = hit.article().journal().journalIssue().pubDate();
                if (pubDate.isStructured()) {
                    System.out.println("citation: " + hit.pmid() + "\tpubdate " + pubDate.toString());
                } else {
                    System.out.println("citation: " + hit.pmid() + "\tUNSTRUCTURED " + pubDate.medlineDate());
                }
            }
            System.out.println("citations in 1985: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1a failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1b: citations between 2000-2005");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("2000", "2005");
            System.out.println("citations in 2000-2005: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1b failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1c: citations between 2004-2005");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("2004", "2005");
            System.out.println("citations in 2004-2005: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1c failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1d: citations between 1964-1965");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("1964", "1965");
            System.out.println("citations in 1964-1965: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1d failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1e: citations between 0000-9999");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("0000", "9999");
            System.out.println("citations in 0000-9999: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1e failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1f: citations between 0000-1000");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("0000", "1000");
            System.out.println("citations in 0000-1000: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1f failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test1g: citations between 3000-5000");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("3000", "5000");
            System.out.println("citations in 3000-5000: " + hits.size());
        } catch (DaoException de) {
            System.out.println("test1g failed: " + de.getMessage());
            de.printStackTrace();
        }

        System.out.println("test2: citations between 1999-1998");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("1999", "1998");
        } catch (DaoException de) {
            System.out.println("test2 passed (i.e. failed): " + de.getMessage());
        }

        System.out.println("test3: citations between foo-bar");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("foo", "bar");
        } catch (DaoException de) {
            System.out.println("test3 passed (i.e. failed): " + de.getMessage());
        }

        System.out.println("test4: citations between empty range");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("", "");
        } catch (DaoException de) {
            System.out.println("test4 passed (i.e. failed): " + de.getMessage());
        }

        System.out.println("test5: citations between empty range");
        try {
            SearchResults<MedlineCitation> hits = medlineSearcher.getCitationsInYearRange("2000", "");
        } catch (DaoException de) {
            System.out.println("test4 passed (i.e. failed): " + de.getMessage());
        }

        System.exit(0);
    }

}