com.digitalpebble.behemoth.BehemothDocument.java Source code

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/**
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package com.digitalpebble.behemoth;

import java.io.DataInput;
import java.io.DataOutput;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Map.Entry;

import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.MapWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.VersionMismatchException;
import org.apache.hadoop.io.Writable;
import org.apache.hadoop.io.WritableUtils;

import com.digitalpebble.behemoth.util.MimeUtil;

/**
 * Implementation of a Document using Hadoop primitives. A BehemothDocument
 * consists of a URL, content type, binary content, metadata and @class
 * Annotations.
 ***/
public class BehemothDocument implements Writable {

    public BehemothDocument() {
    }

    private String url;

    private String contentType;

    private final static byte CUR_VERSION = 1;

    /**
     * Text representation of a document - can be null if the document is at a
     * binary format and has not yet been converted; or if the document had
     * multimedia content
     **/
    private String text;

    /** Binary content from which the text can be extracted **/
    private byte[] content;

    /** Document metadata **/
    private MapWritable metadata;

    /** List holding the annotations **/
    private List<Annotation> annotations;

    /** Returns the text of the document if it has been set or null **/
    public String getText() {
        return text;
    }

    /** Sets the text representation for this document **/
    public void setText(String text) {
        this.text = text;
    }

    /** Returns the binary content of the document if it has been set or null **/
    public byte[] getContent() {
        return content;
    }

    /** Sets the binary content for this document **/
    public void setContent(byte[] content) {
        this.content = content;
    }

    /** Returns the metadata or null if it has not been set **/
    public MapWritable getMetadata() {
        return metadata;
    }

    /** Returns the Metadata or a new MapWritable if it has not been set **/
    public MapWritable getMetadata(boolean create) {
        if (metadata == null && create)
            metadata = new MapWritable();
        return getMetadata();
    }

    /** Sets the metadata for this document **/
    public void setMetadata(MapWritable metadata) {
        this.metadata = metadata;
    }

    /** Returns the list of Annotations if set or an empty List otherwise **/
    public List<Annotation> getAnnotations() {
        if (annotations == null)
            annotations = new ArrayList<Annotation>();
        return annotations;
    }

    /** Sets the annotations for this document **/
    public void setAnnotations(List<Annotation> annotations) {
        this.annotations = annotations;
    }

    /** Returns the URL for this document or null **/
    public String getUrl() {
        return url;
    }

    /** Sets the URL for this document **/
    public void setUrl(String url) {
        this.url = url;
    }

    /** Returns the content type for this document or null **/
    public String getContentType() {
        return contentType;
    }

    /** Sets the content type for this document **/
    public void setContentType(String contentType) {
        // make sure that the mime type does not contain any
        // charset info
        this.contentType = MimeUtil.cleanMimeType(contentType);
    }

    public final void readFields(DataInput in) throws IOException {

        byte version = in.readByte(); // read version
        if (version > CUR_VERSION) // check version
            throw new VersionMismatchException(CUR_VERSION, version);

        url = Text.readString(in);
        int contentLength = in.readInt();
        content = new byte[contentLength];
        if (contentLength > 0)
            in.readFully(content);
        contentType = Text.readString(in);
        boolean hasText = in.readBoolean();
        if (hasText)
            text = Text.readString(in);
        else
            text = null;
        boolean hasMD = in.readBoolean();
        if (hasMD) {
            metadata = new MapWritable();
            metadata.readFields(in);
        } else
            metadata = null;
        // read the number of annotation types
        int numTypes = in.readInt();
        ArrayList<String> types = null;
        if (numTypes > 0) {
            types = new ArrayList<String>(numTypes);
            for (int i = 0; i < numTypes; i++) {
                types.add(Text.readString(in));
            }
        }
        int numAnnots = in.readInt();
        this.annotations = new ArrayList<Annotation>(numAnnots);
        for (int i = 0; i < numAnnots; i++) {
            Annotation annot = new Annotation();
            readAnnotationFields(annot, in, types);
            this.annotations.add(annot);
        }
    }

    /** Serialization of a BehemothDocument **/
    public void write(DataOutput out) throws IOException {
        writeCommon(out);
        writeAnnotations(out); // write annotations
    }

    public void writeCommon(DataOutput out) throws IOException {
        out.writeByte(CUR_VERSION); // write version
        Text.writeString(out, url); // write url
        if (content == null)
            out.writeInt(0); // write content
        else {
            out.writeInt(content.length); // write content
            out.write(content);
        }
        if (contentType != null) {
            Text.writeString(out, contentType); // write contentType
        } else {
            Text.writeString(out, "");
        }
        out.writeBoolean(text != null);
        if (text != null)
            Text.writeString(out, text); // write text
        out.writeBoolean(metadata != null);
        if (metadata != null)
            metadata.write(out); // write metadata;
    }

    private void writeAnnotations(DataOutput out) throws IOException {
        List<String> atypes = new ArrayList<String>();
        if (annotations != null) {
            // go through the annotations and check the annotation types that
            // are present
            for (int i = 0; i < annotations.size(); i++) {
                Annotation annot = annotations.get(i);
                if (atypes.contains(annot.getType()) == false)
                    atypes.add(annot.getType());
                Iterator<String> featNamIter = annot.getFeatures().keySet().iterator();
                while (featNamIter.hasNext()) {
                    String fn = featNamIter.next();
                    if (atypes.contains(fn) == false)
                        atypes.add(fn);
                }
            }
        }
        out.writeInt(atypes.size());
        // write the annotation type and feature names
        // to the output
        for (String type : atypes) {
            Text.writeString(out, type);
        }
        // write annotations
        if (annotations == null)
            out.writeInt(0);
        else
            out.writeInt(annotations.size());
        if (annotations != null) {
            for (int i = 0; i < annotations.size(); i++) {
                Annotation annot = annotations.get(i);
                writeAnnotation(annot, out, atypes);
            }
        }
    }

    protected void writeAnnotation(Annotation annot, DataOutput out, List<String> atypes) throws IOException {
        int typePos = atypes.indexOf(annot.getType());
        IntWritable intStringPool = new IntWritable(typePos);
        intStringPool.write(out);
        WritableUtils.writeVLong(out, annot.getStart());
        WritableUtils.writeVLong(out, annot.getEnd());
        out.writeInt(annot.getFeatureNum());

        if (annot.getFeatures() != null) {
            Iterator<String> featNameIter = annot.getFeatures().keySet().iterator();
            while (featNameIter.hasNext()) {
                String fname = featNameIter.next();
                int fnamePos = atypes.indexOf(fname);
                intStringPool.set(fnamePos);
                intStringPool.write(out);
                WritableUtils.writeString(out, annot.getFeatures().get(fname));
            }
        }
    }

    public void readAnnotationFields(Annotation annot, DataInput in, List<String> types) throws IOException {
        IntWritable posType = new IntWritable();
        posType.readFields(in);
        annot.setType(types.get(posType.get()));
        annot.setStart(WritableUtils.readVLong(in));
        annot.setEnd(WritableUtils.readVLong(in));
        HashMap<String, String> features = null;
        int numFeatures = in.readInt();
        if (numFeatures > 0)
            features = new HashMap<String, String>(numFeatures);
        for (int i = 0; i < numFeatures; i++) {
            posType.readFields(in);
            String fname = types.get(posType.get());
            String fvalue = WritableUtils.readString(in);
            features.put(fname, fvalue);
        }
        annot.setFeatures(features);
    }

    /** Deserialization of a BehemothDocument **/
    public static BehemothDocument read(DataInput in) throws IOException {
        BehemothDocument doc = new BehemothDocument();
        doc.readFields(in);
        return doc;
    }

    /**
     * Returns a complete string representation of the document
     **/
    public String toString() {
        return toString(true, true, true, true);
    }

    /**
     * Returns a string representation of the document
     * 
     * @param binaryContent
     *            whether to include the binary content
     **/
    public String toString(boolean binaryContent) {
        return toString(binaryContent, true, true, true);
    }

    /**
     * Returns a string representation of the document
     * 
     * @param showContent
     *            whether to include the binary content
     * @param showAnnotations
     *            whether to include the annotations content
     * @param showText
     *            whether to include the text
     * @param showMD
     *            whether to include the metadata
     **/
    public String toString(boolean showContent, boolean showAnnotations, boolean showText, boolean showMD) {
        StringBuffer buffer = new StringBuffer();

        buffer.append("\nurl: ").append(url);
        buffer.append("\ncontentType: ").append(contentType);
        if (metadata != null && showMD) {
            buffer.append("\nmetadata: ");
            for (Entry<Writable, Writable> e : metadata.entrySet()) {
                buffer.append("\n\t");
                buffer.append(e.getKey());
                buffer.append(": ");
                buffer.append(e.getValue());
            }
        }
        if (showContent) {
            buffer.append("\nContent:\n");
            int maxLengthText = Math.min(200, content.length);
            buffer.append(new String(Arrays.copyOfRange(content, 0, maxLengthText)));
        }
        // try
        // default
        // encoding
        if (this.text != null && showText) {
            buffer.append("\nText:\n");
            int maxLengthText = Math.min(200, text.length());
            buffer.append(text.substring(0, maxLengthText));
        }
        if (annotations == null || !showAnnotations)
            return buffer.toString();
        buffer.append("\nAnnotations:\n");
        for (Annotation ann : annotations) {
            buffer.append("\t").append(ann.toString()).append("\n");
        }

        return buffer.toString();
    }

}