com.opengamma.analytics.math.regression.OrdinaryLeastSquaresRegression.java Source code

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Here is the source code for com.opengamma.analytics.math.regression.OrdinaryLeastSquaresRegression.java

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/**
 * Copyright (C) 2009 - present by OpenGamma Inc. and the OpenGamma group of companies
 * 
 * Please see distribution for license.
 */
package com.opengamma.analytics.math.regression;

import org.apache.commons.math.distribution.ContinuousDistribution;
import org.apache.commons.math.distribution.TDistributionImpl;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import cern.colt.matrix.DoubleFactory1D;
import cern.colt.matrix.DoubleFactory2D;
import cern.colt.matrix.DoubleMatrix1D;
import cern.colt.matrix.DoubleMatrix2D;
import cern.colt.matrix.linalg.Algebra;

/**
 * 
 */
public class OrdinaryLeastSquaresRegression extends LeastSquaresRegression {
    private static final Logger s_logger = LoggerFactory.getLogger(OrdinaryLeastSquaresRegression.class);
    private final Algebra _algebra = new Algebra();

    @Override
    public LeastSquaresRegressionResult regress(final double[][] x, final double[][] weights, final double[] y,
            final boolean useIntercept) {
        if (weights != null) {
            s_logger.info("Weights were provided for OLS regression: they will be ignored");
        }
        return regress(x, y, useIntercept);
    }

    public LeastSquaresRegressionResult regress(final double[][] x, final double[] y, final boolean useIntercept) {
        checkData(x, y);
        final double[][] indep = addInterceptVariable(x, useIntercept);
        final double[] dep = new double[y.length];
        for (int i = 0; i < y.length; i++) {
            dep[i] = y[i];
        }
        final DoubleMatrix2D matrix = DoubleFactory2D.dense.make(indep);
        final DoubleMatrix1D vector = DoubleFactory1D.dense.make(dep);
        final DoubleMatrix2D transpose = _algebra.transpose(matrix);
        final DoubleMatrix1D betasVector = _algebra
                .mult(_algebra.mult(_algebra.inverse(_algebra.mult(transpose, matrix)), transpose), vector);
        final double[] yModel = convertArray(_algebra.mult(matrix, betasVector).toArray());
        final double[] betas = convertArray(betasVector.toArray());
        return getResultWithStatistics(x, y, betas, yModel, transpose, matrix, useIntercept);
    }

    private LeastSquaresRegressionResult getResultWithStatistics(final double[][] x, final double[] y,
            final double[] betas, final double[] yModel, final DoubleMatrix2D transpose,
            final DoubleMatrix2D matrix, final boolean useIntercept) {
        double yMean = 0.;
        for (final double y1 : y) {
            yMean += y1;
        }
        yMean /= y.length;
        double totalSumOfSquares = 0.;
        double errorSumOfSquares = 0.;
        final int n = x.length;
        final int k = betas.length;
        final double[] residuals = new double[n];
        final double[] stdErrorBetas = new double[k];
        final double[] tStats = new double[k];
        final double[] pValues = new double[k];
        for (int i = 0; i < n; i++) {
            totalSumOfSquares += (y[i] - yMean) * (y[i] - yMean);
            residuals[i] = y[i] - yModel[i];
            errorSumOfSquares += residuals[i] * residuals[i];
        }
        final double regressionSumOfSquares = totalSumOfSquares - errorSumOfSquares;
        final double[][] covarianceBetas = convertArray(
                _algebra.inverse(_algebra.mult(transpose, matrix)).toArray());
        final double rSquared = regressionSumOfSquares / totalSumOfSquares;
        final double adjustedRSquared = 1. - (1 - rSquared) * (n - 1.) / (n - k);
        final double meanSquareError = errorSumOfSquares / (n - k);
        final ContinuousDistribution studentT = new TDistributionImpl(n - k);
        // final ProbabilityDistribution<Double> studentT = new
        // StudentTDistribution(n - k);
        for (int i = 0; i < k; i++) {
            stdErrorBetas[i] = Math.sqrt(meanSquareError * covarianceBetas[i][i]);
            tStats[i] = betas[i] / stdErrorBetas[i];
            try {
                pValues[i] = 1 - studentT.cumulativeProbability(Math.abs(tStats[i]));
            } catch (final org.apache.commons.math.MathException e) {
                throw new com.opengamma.analytics.math.MathException(e);
            }
        }
        return new LeastSquaresRegressionResult(betas, residuals, meanSquareError, stdErrorBetas, rSquared,
                adjustedRSquared, tStats, pValues, useIntercept);
    }
}