coolmapplugin.actions.MapSelectedToCytoscape.java Source code

Introduction

Here is the source code for coolmapplugin.actions.MapSelectedToCytoscape.java

Source

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package coolmapplugin.actions;

import com.google.common.collect.Range;
import coolmap.application.CoolMapMaster;
import coolmap.application.widget.impl.console.CMConsole;
import coolmap.canvas.CoolMapView;
import coolmap.data.CoolMapObject;
import coolmapplugin.util.CMCyCommunicationUtil;
import java.awt.event.ActionEvent;
import java.util.List;
import javax.swing.AbstractAction;
import java.util.LinkedList;

/**
 *
 * @author Keqiang Li
 */
public class MapSelectedToCytoscape extends AbstractAction {

    @Override
    public void actionPerformed(ActionEvent e) {
        List<Object> selectedElements = getSelectedColumnAndRowNames();
        if (selectedElements == null || selectedElements.isEmpty()) {
            return;
        }

        Long curNetwork = CMCyCommunicationUtil.getSelectedNetwork();
        boolean result = CMCyCommunicationUtil.setNodesSelectedByNodeNames(curNetwork.toString(), selectedElements,
                true);

        if (!result) {
            CMConsole.logError("Failed to Map. Couldn't communicate with Cytoscape");
        }
    }

    private LinkedList<Object> getSelectedColumnAndRowNames() {
        try {

            CoolMapObject obj = CoolMapMaster.getActiveCoolMapObject();
            CoolMapView coolMapView = obj.getCoolMapView();

            List<Range<Integer>> columnList = coolMapView.getSelectedColumns();
            List<Range<Integer>> rowList = coolMapView.getSelectedRows();

            LinkedList<Object> names = new LinkedList<>();

            for (Range<Integer> range : columnList) {
                for (int i = range.lowerEndpoint(); i < range.upperEndpoint(); ++i) {
                    String columnName = obj.getViewNodeColumn(i).getName();
                    names.add(columnName);
                }
            }

            for (Range<Integer> range : rowList) {
                for (int i = range.lowerEndpoint(); i < range.upperEndpoint(); ++i) {
                    String rowName = obj.getViewNodeRow(i).getName();
                    names.add(rowName);
                }
            }

            return names;
        } catch (Exception e) {
            CMConsole.logError("Failed to get selected columns and rows. Internal Error : " + e.getMessage());
        }
        return null;

    }
}