Java tutorial
/******************************************************************************* * In the Hi-WAY project we propose a novel approach of executing scientific * workflows processing Big Data, as found in NGS applications, on distributed * computational infrastructures. The Hi-WAY software stack comprises the func- * tional workflow language Cuneiform as well as the Hi-WAY ApplicationMaster * for Apache Hadoop 2.x (YARN). * * List of Contributors: * * Jrgen Brandt (HU Berlin) * Marc Bux (HU Berlin) * Ulf Leser (HU Berlin) * * Jrgen Brandt is funded by the European Commission through the BiobankCloud * project. Marc Bux is funded by the Deutsche Forschungsgemeinschaft through * research training group SOAMED (GRK 1651). * * Copyright 2014 Humboldt-Universitt zu Berlin * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. ******************************************************************************/ package de.huberlin.cuneiform.dax.repl; import java.util.UUID; import org.antlr.v4.runtime.ANTLRInputStream; import org.antlr.v4.runtime.CommonTokenStream; import org.antlr.v4.runtime.tree.ParseTree; import org.antlr.v4.runtime.tree.ParseTreeWalker; import org.apache.commons.logging.Log; import de.huberlin.cuneiform.dax.semanticmodel.DaxSemanticModelListener; import de.huberlin.cuneiform.libdax.parser.DaxLexer; import de.huberlin.cuneiform.libdax.parser.DaxParser; import de.huberlin.wbi.cuneiform.core.repl.BaseRepl; import de.huberlin.wbi.cuneiform.core.semanticmodel.CompoundExpr; import de.huberlin.wbi.cuneiform.core.semanticmodel.TopLevelContext; import de.huberlin.wbi.cuneiform.core.ticketsrc.TicketSrcActor; public class DaxRepl extends BaseRepl { public DaxRepl(TicketSrcActor ticketSrc, Log statLog) { super(ticketSrc, statLog); } @Override public synchronized int interpret(String input) { DaxSemanticModelListener adag; TopLevelContext tlc; adag = process(input); tlc = adag.toTopLevelContext(); return interpret(tlc); } @Override public void queryFailedPost(UUID queryId, Long ticketId, Exception e, String script, String stdOut, String stdErr) { } @Override public void queryFinishedPost(UUID queryId, CompoundExpr result) { } @Override public void queryStartedPost(UUID runId) { } public static DaxSemanticModelListener process(String input) { ANTLRInputStream instream; DaxLexer lexer; CommonTokenStream tokenStream; DaxParser parser; ParseTree tree; ParseTreeWalker walker; DaxSemanticModelListener adag; walker = new ParseTreeWalker(); // parse original content instream = new ANTLRInputStream(input); lexer = new DaxLexer(instream); lexer.removeErrorListeners(); tokenStream = new CommonTokenStream(lexer); parser = new DaxParser(tokenStream); parser.removeErrorListeners(); adag = new DaxSemanticModelListener(); lexer.addErrorListener(adag); parser.addErrorListener(adag); tree = parser.adag(); walker.walk(adag, tree); return adag; } }