de.symeda.sormas.ui.dashboard.surveillance.SurveillanceEpiCurveComponent.java Source code

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/*******************************************************************************
 * SORMAS - Surveillance Outbreak Response Management & Analysis System
 * Copyright  2016-2018 Helmholtz-Zentrum fr Infektionsforschung GmbH (HZI)
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <https://www.gnu.org/licenses/>.
 *******************************************************************************/
package de.symeda.sormas.ui.dashboard.surveillance;

import java.util.ArrayList;
import java.util.Calendar;
import java.util.Date;
import java.util.List;
import java.util.Map;

import com.vaadin.v7.ui.OptionGroup;
import com.vaadin.ui.themes.ValoTheme;

import de.symeda.sormas.api.FacadeProvider;
import de.symeda.sormas.api.caze.CaseClassification;
import de.symeda.sormas.api.caze.CaseCriteria;
import de.symeda.sormas.api.caze.NewCaseDateType;
import de.symeda.sormas.api.i18n.Captions;
import de.symeda.sormas.api.i18n.I18nProperties;
import de.symeda.sormas.api.person.PresentCondition;
import de.symeda.sormas.api.utils.DateHelper;
import de.symeda.sormas.ui.UserProvider;
import de.symeda.sormas.ui.dashboard.DashboardDataProvider;
import de.symeda.sormas.ui.dashboard.diagram.AbstractEpiCurveComponent;
import de.symeda.sormas.ui.dashboard.diagram.EpiCurveGrouping;
import de.symeda.sormas.ui.utils.CssStyles;

public class SurveillanceEpiCurveComponent extends AbstractEpiCurveComponent {

    private static final long serialVersionUID = 6582975657305031105L;

    private SurveillanceEpiCurveMode epiCurveSurveillanceMode;

    public SurveillanceEpiCurveComponent(DashboardDataProvider dashboardDataProvider) {
        super(dashboardDataProvider);
    }

    @Override
    protected OptionGroup createEpiCurveModeSelector() {
        if (epiCurveSurveillanceMode == null) {
            epiCurveSurveillanceMode = SurveillanceEpiCurveMode.CASE_STATUS;
        }

        OptionGroup epiCurveModeOptionGroup = new OptionGroup();
        epiCurveModeOptionGroup.setMultiSelect(false);
        CssStyles.style(epiCurveModeOptionGroup, ValoTheme.OPTIONGROUP_HORIZONTAL,
                CssStyles.OPTIONGROUP_HORIZONTAL_SUBTLE);
        epiCurveModeOptionGroup.addItems((Object[]) SurveillanceEpiCurveMode.values());
        epiCurveModeOptionGroup.setValue(epiCurveSurveillanceMode);
        epiCurveModeOptionGroup.select(epiCurveSurveillanceMode);
        epiCurveModeOptionGroup.addValueChangeListener(e -> {
            epiCurveSurveillanceMode = (SurveillanceEpiCurveMode) e.getProperty().getValue();
            clearAndFillEpiCurveChart();
        });
        return epiCurveModeOptionGroup;
    }

    @Override
    public void clearAndFillEpiCurveChart() {
        StringBuilder hcjs = new StringBuilder();
        hcjs.append("var options = {" + "chart:{ " + " type: 'column', " + " backgroundColor: 'transparent' " + "},"
                + "credits:{ enabled: false }," + "exporting:{ " + " enabled: true,"
                + " buttons:{ contextButton:{ theme:{ fill: 'transparent' } } }" + "}," + "title:{ text: '' },");

        // Creates and sets the labels for each day on the x-axis
        List<Date> filteredDates = buildListOfFilteredDates();
        List<String> newLabels = new ArrayList<>();
        Calendar calendar = Calendar.getInstance();
        for (Date date : filteredDates) {
            if (epiCurveGrouping == EpiCurveGrouping.DAY) {
                String label = DateHelper.formatLocalShortDate(date);
                newLabels.add(label);
            } else if (epiCurveGrouping == EpiCurveGrouping.WEEK) {
                calendar.setTime(date);
                String label = DateHelper.getEpiWeek(date).toShortString();
                newLabels.add(label);
            } else {
                String label = DateHelper.formatDateWithMonthAbbreviation(date);
                newLabels.add(label);
            }
        }

        hcjs.append("xAxis: { categories: [");
        for (String s : newLabels) {
            if (newLabels.indexOf(s) == newLabels.size() - 1) {
                hcjs.append("'" + s + "']},");
            } else {
                hcjs.append("'" + s + "', ");
            }
        }

        hcjs.append("yAxis: { min: 0, title: { text: '" + I18nProperties.getCaption(Captions.dashboardNumberOfCases)
                + "' }, allowDecimals: false, softMax: 10, " + "stackLabels: { enabled: true, "
                + "style: {fontWeight: 'normal', textOutline: '0', gridLineColor: '#000000', color: (Highcharts.theme && Highcharts.theme.textColor) || 'gray' } } },"
                + "legend: { verticalAlign: 'top', backgroundColor: 'transparent', align: 'left', "
                + "borderWidth: 0, shadow: false, margin: 30, padding: 0 },"
                + "tooltip: { headerFormat: '<b>{point.x}</b><br/>', pointFormat: '{series.name}: {point.y}<br/>"
                + I18nProperties.getCaption(Captions.dashboardTotal) + ": {point.stackTotal}'},"
                + "plotOptions: { column: { borderWidth: 0, stacking: 'normal', groupPadding: 0, pointPadding: 0, dataLabels: {"
                + "enabled: true, formatter: function() { if (this.y > 0) return this.y; },"
                + "color: (Highcharts.theme && Highcharts.theme.dataLabelsColor) || 'white' } } },");

        if (epiCurveSurveillanceMode == SurveillanceEpiCurveMode.CASE_STATUS) {
            // Adds the number of confirmed, probable and suspect cases for each day as data
            int[] confirmedNumbers = new int[newLabels.size()];
            int[] probableNumbers = new int[newLabels.size()];
            int[] suspectNumbers = new int[newLabels.size()];
            int[] notYetClassifiedNumbers = new int[newLabels.size()];

            for (int i = 0; i < filteredDates.size(); i++) {
                Date date = filteredDates.get(i);

                CaseCriteria caseCriteria = new CaseCriteria().disease(dashboardDataProvider.getDisease())
                        .region(dashboardDataProvider.getRegion()).district(dashboardDataProvider.getDistrict());
                if (epiCurveGrouping == EpiCurveGrouping.DAY) {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfDay(date), DateHelper.getEndOfDay(date),
                            NewCaseDateType.MOST_RELEVANT);
                } else if (epiCurveGrouping == EpiCurveGrouping.WEEK) {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfWeek(date), DateHelper.getEndOfWeek(date),
                            NewCaseDateType.MOST_RELEVANT);
                } else {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfMonth(date),
                            DateHelper.getEndOfMonth(date), NewCaseDateType.MOST_RELEVANT);
                }

                Map<CaseClassification, Long> caseCounts = FacadeProvider.getCaseFacade()
                        .getCaseCountPerClassification(caseCriteria, UserProvider.getCurrent().getUuid());

                Long confirmedCount = caseCounts.get(CaseClassification.CONFIRMED);
                Long probableCount = caseCounts.get(CaseClassification.PROBABLE);
                Long suspectCount = caseCounts.get(CaseClassification.SUSPECT);
                Long notYetClassifiedCount = caseCounts.get(CaseClassification.NOT_CLASSIFIED);
                confirmedNumbers[i] = confirmedCount != null ? confirmedCount.intValue() : 0;
                probableNumbers[i] = probableCount != null ? probableCount.intValue() : 0;
                suspectNumbers[i] = suspectCount != null ? suspectCount.intValue() : 0;
                notYetClassifiedNumbers[i] = notYetClassifiedCount != null ? notYetClassifiedCount.intValue() : 0;
            }

            hcjs.append("series: [");
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardNotYetClassified)
                    + "', color: '#808080', dataLabels: { allowOverlap: false }, data: [");
            for (int i = 0; i < notYetClassifiedNumbers.length; i++) {
                if (i == notYetClassifiedNumbers.length - 1) {
                    hcjs.append(notYetClassifiedNumbers[i] + "]},");
                } else {
                    hcjs.append(notYetClassifiedNumbers[i] + ", ");
                }
            }
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardSuspect)
                    + "', color: '#FFD700', dataLabels: { allowOverlap: false },  data: [");
            for (int i = 0; i < suspectNumbers.length; i++) {
                if (i == suspectNumbers.length - 1) {
                    hcjs.append(suspectNumbers[i] + "]},");
                } else {
                    hcjs.append(suspectNumbers[i] + ", ");
                }
            }
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardProbable)
                    + "', color: '#FF4500', dataLabels: { allowOverlap: false },  data: [");
            for (int i = 0; i < probableNumbers.length; i++) {
                if (i == probableNumbers.length - 1) {
                    hcjs.append(probableNumbers[i] + "]},");
                } else {
                    hcjs.append(probableNumbers[i] + ", ");
                }
            }
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardConfirmed)
                    + "', color: '#B22222', dataLabels: { allowOverlap: false }, data: [");
            for (int i = 0; i < confirmedNumbers.length; i++) {
                if (i == confirmedNumbers.length - 1) {
                    hcjs.append(confirmedNumbers[i] + "]}]};");
                } else {
                    hcjs.append(confirmedNumbers[i] + ", ");
                }
            }
        } else {
            // Adds the number of alive and dead cases for each day as data
            int[] aliveNumbers = new int[newLabels.size()];
            int[] deadNumbers = new int[newLabels.size()];

            for (int i = 0; i < filteredDates.size(); i++) {
                Date date = filteredDates.get(i);

                CaseCriteria caseCriteria = new CaseCriteria().disease(dashboardDataProvider.getDisease())
                        .region(dashboardDataProvider.getRegion()).district(dashboardDataProvider.getDistrict());
                if (epiCurveGrouping == EpiCurveGrouping.DAY) {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfDay(date), DateHelper.getEndOfDay(date),
                            NewCaseDateType.MOST_RELEVANT);
                } else if (epiCurveGrouping == EpiCurveGrouping.WEEK) {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfWeek(date), DateHelper.getEndOfWeek(date),
                            NewCaseDateType.MOST_RELEVANT);
                } else {
                    caseCriteria.newCaseDateBetween(DateHelper.getStartOfMonth(date),
                            DateHelper.getEndOfMonth(date), NewCaseDateType.MOST_RELEVANT);
                }

                Map<PresentCondition, Long> caseCounts = FacadeProvider.getCaseFacade()
                        .getCaseCountPerPersonCondition(caseCriteria, UserProvider.getCurrent().getUuid());

                Long aliveCount = caseCounts.get(PresentCondition.ALIVE);
                Long deadCount = caseCounts.get(PresentCondition.DEAD);
                aliveNumbers[i] = aliveCount != null ? aliveCount.intValue() : 0;
                deadNumbers[i] = deadCount != null ? deadCount.intValue() : 0;
            }

            hcjs.append("series: [");
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardAlive)
                    + "', color: '#32CD32', dataLabels: { allowOverlap: false }, data: [");
            for (int i = 0; i < aliveNumbers.length; i++) {
                if (i == aliveNumbers.length - 1) {
                    hcjs.append(aliveNumbers[i] + "]},");
                } else {
                    hcjs.append(aliveNumbers[i] + ", ");
                }
            }
            hcjs.append("{ name: '" + I18nProperties.getCaption(Captions.dashboardDead)
                    + "', color: '#B22222', dataLabels: { allowOverlap: false },  data: [");
            for (int i = 0; i < deadNumbers.length; i++) {
                if (i == deadNumbers.length - 1) {
                    hcjs.append(deadNumbers[i] + "]}]};");
                } else {
                    hcjs.append(deadNumbers[i] + ", ");
                }
            }
        }

        epiCurveChart.setHcjs(hcjs.toString());
    }

}