edu.duke.cabig.c3pr.dao.ICD9DiseaseSiteDao.java Source code

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Here is the source code for edu.duke.cabig.c3pr.dao.ICD9DiseaseSiteDao.java

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/*******************************************************************************
 * Copyright Duke Comprehensive Cancer Center and SemanticBits
 * 
 * Distributed under the OSI-approved BSD 3-Clause License.
 * See http://ncip.github.com/c3pr/LICENSE.txt for details.
 ******************************************************************************/
package edu.duke.cabig.c3pr.dao;

import java.util.Arrays;
import java.util.Collections;
import java.util.List;

import org.hibernate.Criteria;
import org.hibernate.criterion.CriteriaSpecification;
import org.hibernate.criterion.Order;

import edu.duke.cabig.c3pr.constants.ICD9DiseaseSiteCodeDepth;
import edu.duke.cabig.c3pr.domain.ICD9DiseaseSite;
import edu.nwu.bioinformatics.commons.CollectionUtils;

// TODO: Auto-generated Javadoc
/*
 * @author kulasekaran
 * 
 */
/**
 * The Class AnatomicSiteDao.
 */
public class ICD9DiseaseSiteDao extends GridIdentifiableDao<ICD9DiseaseSite> {

    /** The Constant SUBSTRING_MATCH_PROPERTIES. */
    private static final List<String> SUBSTRING_MATCH_PROPERTIES = Arrays.asList("name");

    /** The Constant EXACT_MATCH_PROPERTIES. */
    private static final List<String> EXACT_MATCH_PROPERTIES = Collections.emptyList();

    /** The Constant EXTRA_PARAMS. */
    private static final List<Object> EXTRA_PARAMS = Collections.emptyList();

    /* (non-Javadoc)
     * @see edu.duke.cabig.c3pr.dao.C3PRBaseDao#domainClass()
     */
    @Override
    public Class<ICD9DiseaseSite> domainClass() {
        return ICD9DiseaseSite.class;
    }

    /**
     * Gets the anatomic sites by subnames.
     * 
     * @param subnames the subnames
     * 
     * @return the by subnames
     */
    public List<ICD9DiseaseSite> getBySubnames(String[] subnames) {
        return findBySubname(subnames, null, null, EXTRA_PARAMS, SUBSTRING_MATCH_PROPERTIES,
                EXACT_MATCH_PROPERTIES);
    }

    /**
     * get by name
     * 
     * @param name the name
     * 
     * @return the list< icd9 disease sites>
     */
    public List<ICD9DiseaseSite> getByName(String name) {
        return (List<ICD9DiseaseSite>) (getHibernateTemplate().find("from ICD9DiseaseSite where name=?",
                new Object[] { name }));
    }

    /**
     * get selectables 
     * 
     *  * @return the list< icd9 disease sites>
     */
    public List<ICD9DiseaseSite> getSelectableSites() {
        return (List<ICD9DiseaseSite>) (getHibernateTemplate().find("from ICD9DiseaseSite where selectable='1'"));
    }

    /**
     * get non selectables 
     * 
     *  * @return the list< icd9 disease sites>
     */
    public List<ICD9DiseaseSite> getNonSelectableSites() {
        return (List<ICD9DiseaseSite>) (getHibernateTemplate().find("from ICD9DiseaseSite where selectable='0'"));
    }

    /**
     * get by level
     * 
     * @param level the level
     *      * 
     * @return the list< icd9 disease sites>
     */
    public List<ICD9DiseaseSite> getByLevel(ICD9DiseaseSiteCodeDepth level) {
        return (List<ICD9DiseaseSite>) (getHibernateTemplate().find("from ICD9DiseaseSite where level=?",
                new Object[] { level }));
    }

    /**
     * get by code
     * 
     * @param code the code
     * 
     * @return the list< icd9 disease sites>
     */
    public ICD9DiseaseSite getByCode(String code) {
        return CollectionUtils.firstElement((List<ICD9DiseaseSite>) (getHibernateTemplate()
                .find("from ICD9DiseaseSite where code=?", new Object[] { code })));
    }

    public List<ICD9DiseaseSite> getAllOrderedByName() {
        Criteria icdDiseaseSiteCriteria = getSession().createCriteria(ICD9DiseaseSite.class);
        icdDiseaseSiteCriteria.addOrder(Order.asc("name"));
        icdDiseaseSiteCriteria.setResultTransformer(CriteriaSpecification.DISTINCT_ROOT_ENTITY);
        return icdDiseaseSiteCriteria.list();
    }

}