edu.harvard.med.iccbl.screensaver.io.cells.CellImporter.java Source code

Introduction

Here is the source code for edu.harvard.med.iccbl.screensaver.io.cells.CellImporter.java

Source

// $HeadURL: http://seanderickson1@forge.abcd.harvard.edu/svn/screensaver/branches/serickson/3200/batch/src/main/java/edu/harvard/med/iccbl/screensaver/io/libraries/MasterStockPlateMappingLoader.java $
// $Id: MasterStockPlateMappingLoader.java 6949 2012-01-13 19:00:59Z seanderickson1 $
//
// Copyright  2010 by the President and Fellows of Harvard College.
// 
// Screensaver is an open-source project developed by the ICCB-L and NSRB labs
// at Harvard Medical School. This software is distributed under the terms of
// the GNU General Public License.

package edu.harvard.med.iccbl.screensaver.io.cells;

import java.io.File;
import java.io.IOException;

import org.apache.commons.cli.OptionBuilder;
import org.apache.log4j.Logger;

import edu.harvard.med.screensaver.db.DAOTransaction;
import edu.harvard.med.screensaver.db.DAOTransactionRollbackException;
import edu.harvard.med.screensaver.db.GenericEntityDAO;
import edu.harvard.med.screensaver.io.CommandLineApplication;
import edu.harvard.med.screensaver.io.ParseException;
import edu.harvard.med.screensaver.io.cells.CellParser;

/**
 * 
 */
public class CellImporter extends CommandLineApplication {
    private static final Logger log = Logger.getLogger(CellImporter.class);

    public static void main(String[] args) {
        try {
            final CellImporter app = new CellImporter(args);
            app.addCommandLineOption(
                    OptionBuilder.isRequired().hasArg(true).withArgName("file").withLongOpt("input-file")
                            .withDescription("The path of a CSV file containing the Cell Information").create("f"));
            app.processOptions(true, false);

            File file = app.getCommandLineOptionValue("f", File.class);
            final CellParser importer = (CellParser) app.getSpringBean("cellParser");
            importer.load(file);
        } catch (Exception e) {
            log.error("application exception", e);
            System.exit(1);
        }
    }

    @SuppressWarnings("static-access")
    public CellImporter(String[] args) {
        super(args);
    }

}