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/** * The software subject to this notice and license includes both human readable * source code form and machine readable, binary, object code form. The NCI OCR * Software was developed in conjunction with the National Cancer Institute * (NCI) by NCI employees and 5AM Solutions, Inc. (5AM). To the extent * government employees are authors, any rights in such works shall be subject * to Title 17 of the United States Code, section 105. * * This NCI OCR Software License (the License) is between NCI and You. You (or * Your) shall mean a person or an entity, and all other entities that control, * are controlled by, or are under common control with the entity. Control for * purposes of this definition means (i) the direct or indirect power to cause * the direction or management of such entity, whether by contract or otherwise, * or (ii) ownership of fifty percent (50%) or more of the outstanding shares, * or (iii) beneficial ownership of such entity. * * This License is granted provided that You agree to the conditions described * below. 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This License is granted at no charge to You. * * Your redistributions of the source code for the Software must retain the * above copyright notice, this list of conditions and the disclaimer and * limitation of liability of Article 6, below. Your redistributions in object * code form must reproduce the above copyright notice, this list of conditions * and the disclaimer of Article 6 in the documentation and/or other materials * provided with the distribution, if any. * * Your end-user documentation included with the redistribution, if any, must * include the following acknowledgment: This product includes software * developed by 5AM and the National Cancer Institute. If You do not include * such end-user documentation, You shall include this acknowledgment in the * Software itself, wherever such third-party acknowledgments normally appear. * * You may not use the names "The National Cancer Institute", "NCI", or "5AM" * to endorse or promote products derived from this Software. This License does * not authorize You to use any trademarks, service marks, trade names, logos or * product names of either NCI or 5AM, except as required to comply with the * terms of this License. * * For sake of clarity, and not by way of limitation, You may incorporate this * Software into Your proprietary programs and into any third party proprietary * programs. However, if You incorporate the Software into third party * proprietary programs, You agree that You are solely responsible for obtaining * any permission from such third parties required to incorporate the Software * into such third party proprietary programs and for informing Your * sub-licensees, including without limitation Your end-users, of their * obligation to secure any required permissions from such third parties before * incorporating the Software into such third party proprietary software * programs. In the event that You fail to obtain such permissions, You agree * to indemnify NCI for any claims against NCI by such third parties, except to * the extent prohibited by law, resulting from Your failure to obtain such * permissions. * * For sake of clarity, and not by way of limitation, You may add Your own * copyright statement to Your modifications and to the derivative works, and * You may provide additional or different license terms and conditions in Your * sublicenses of modifications of the Software, or any derivative works of the * Software as a whole, provided Your use, reproduction, and distribution of the * Work otherwise complies with the conditions stated in this License. * * THIS SOFTWARE IS PROVIDED "AS IS," AND ANY EXPRESSED OR IMPLIED WARRANTIES, * (INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, * NON-INFRINGEMENT AND FITNESS FOR A PARTICULAR PURPOSE) ARE DISCLAIMED. IN NO * EVENT SHALL THE NATIONAL CANCER INSTITUTE, 5AM SOLUTIONS, INC. OR THEIR * AFFILIATES BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR * OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package gov.nih.nci.firebird.nes.organization; import static gov.nih.nci.firebird.test.ValueGenerator.getUniqueString; import static org.junit.Assert.*; import static org.mockito.Mockito.*; import gov.nih.nci.firebird.data.AbstractOrganizationRole; import gov.nih.nci.firebird.data.ClinicalLaboratory; import gov.nih.nci.firebird.data.CurationDataset; import gov.nih.nci.firebird.data.CurationStatus; import gov.nih.nci.firebird.data.Organization; import gov.nih.nci.firebird.data.OrganizationRoleType; import gov.nih.nci.firebird.nes.NesIIRoot; import gov.nih.nci.firebird.nes.NesId; import gov.nih.nci.firebird.service.organization.InvalidatedOrganizationException; import gov.nih.nci.firebird.test.GuiceTestRunnerWithMocks; import gov.nih.nci.firebird.test.OrganizationFactory; import java.util.Date; import java.util.List; import org.apache.commons.lang3.time.DateUtils; import org.junit.Before; import org.junit.Test; import org.junit.runner.RunWith; import org.mockito.Mock; import org.mockito.MockitoAnnotations; import com.google.common.collect.Lists; import com.google.inject.Inject; @RunWith(GuiceTestRunnerWithMocks.class) public class NesOrganizationServiceBeanTest { private static final String TEST_NES_ID = "NES"; @Mock private PracticeSiteStrategy mockPracticeSiteStrategy; @Mock private InstitutionReviewBoardStrategy mockIrbStrategy; @Mock private ClinicalLabStrategy mockClinicalLabStrategy; @Mock private PrimaryOrganizationStrategy mockPrimaryOrganizationStrategy; @Mock private PharmaceuticalCompanyStrategy mockPharmaceuticalCompanyStrategy; @Mock private GenericOrganizationStrategy mockGenericOrganizationStrategy; @Mock private NesOrganizationIntegrationServiceFactory mockNesServiceFactory; @Inject private NesOrganizationServiceBean bean; @Inject private BaseOrganizationIntegrationService mockOrganizationIntegrationService; private Organization organization; @Before public void setUp() { MockitoAnnotations.initMocks(this); organization = OrganizationFactory.getInstance().create(); bean.setClinicalLabStrategy(mockClinicalLabStrategy); bean.setIrbStrategy(mockIrbStrategy); bean.setPracticeSiteStrategy(mockPracticeSiteStrategy); bean.setNesServiceFactory(mockNesServiceFactory); bean.setPrimaryOrganizationStrategy(mockPrimaryOrganizationStrategy); bean.setPharmaceuticalCompanyStrategy(mockPharmaceuticalCompanyStrategy); bean.setGenericOrganizationStrategy(mockGenericOrganizationStrategy); when(mockNesServiceFactory.getService(TEST_NES_ID)).thenReturn(mockOrganizationIntegrationService); when(mockNesServiceFactory.getService(organization)).thenReturn(mockOrganizationIntegrationService); } @Test public void testSearch_ForPracticeSites() { String term = "term"; when(mockPracticeSiteStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.PRACTICE_SITE); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockPracticeSiteStrategy).search(term); verifyZeroInteractions(mockClinicalLabStrategy, mockIrbStrategy); } @Test public void testSearch_ForIrbs() { String term = "term"; when(mockIrbStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.IRB); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockIrbStrategy).search(term); verifyZeroInteractions(mockPracticeSiteStrategy, mockClinicalLabStrategy); } @Test public void testSearch_ForClinicalLabs() { String term = "term"; when(mockClinicalLabStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.CLINICAL_LABORATORY); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockClinicalLabStrategy).search(term); verifyZeroInteractions(mockPracticeSiteStrategy, mockIrbStrategy); } @Test public void testSearch_ForGenericOrganizations() { String term = "term"; when(mockGenericOrganizationStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.GENERIC_ORGANIZATION); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockGenericOrganizationStrategy).search(term); verifyZeroInteractions(mockPracticeSiteStrategy, mockIrbStrategy); } @Test public void testSearch_ForPrimaryOrganizations() { String term = "term"; when(mockPrimaryOrganizationStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.PRIMARY_ORGANIZATION); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockPrimaryOrganizationStrategy).search(term); verifyZeroInteractions(mockPracticeSiteStrategy, mockIrbStrategy); } @Test public void testSearch_ForPharmaceuticalCompanies() { String term = "term"; when(mockPharmaceuticalCompanyStrategy.search(term)).thenReturn(Lists.newArrayList(organization)); List<Organization> results = bean.search(term, OrganizationRoleType.PHARMACEUTICAL_COMPANY); List<Organization> expectedResults = Lists.newArrayList(organization); assertEquals(expectedResults, results); verify(mockPharmaceuticalCompanyStrategy).search(term); verifyZeroInteractions(mockPracticeSiteStrategy, mockIrbStrategy); } @Test public void testGetByExternalId() throws Exception { when(mockOrganizationIntegrationService.getById(TEST_NES_ID)).thenReturn(organization); assertEquals(organization, bean.getByExternalId(TEST_NES_ID)); } @Test(expected = InvalidatedOrganizationException.class) public void testGetByExternalIdentifer_NoResult() throws Exception { when(mockOrganizationIntegrationService.getById(TEST_NES_ID)) .thenThrow(new InvalidatedOrganizationException()); bean.getByExternalId(TEST_NES_ID); } @Test public void testValidate() throws Exception { ResearchOrganizationType type = ResearchOrganizationType.CANCER_CENTER; bean.validate(organization, OrganizationRoleType.IRB, type); verify(mockIrbStrategy).validate(organization, type); } @Test public void testCreate() throws Exception { Object arg = null; bean.create(organization, OrganizationRoleType.IRB, arg); verify(mockIrbStrategy).create(organization, arg); } @Test public void testRefreshNow() throws Exception { bean.refreshNow(organization); verify(mockOrganizationIntegrationService).refresh(organization); } @Test public void testRefreshIfStale_StaleOrganization() throws Exception { Date staleDate = DateUtils.addDays(new Date(), -2); NesOrganizationData nesOrganizationData = (NesOrganizationData) organization.getExternalData(); nesOrganizationData.setLastNesRefresh(staleDate); bean.refreshIfStale(organization); verify(mockOrganizationIntegrationService).refresh(organization); } @Test public void testRefreshIfStale_FreshOrganization() throws Exception { Date today = new Date(); NesOrganizationData nesOrganizationData = (NesOrganizationData) organization.getExternalData(); nesOrganizationData.setLastNesRefresh(today); bean.refreshIfStale(organization); verify(mockOrganizationIntegrationService, never()).refresh(organization); } @Test public void testGetByAlternateIdentifier() throws Exception { String alternateIdentifier = "id"; when(mockGenericOrganizationStrategy.getByAlternateIdentifier("id")) .thenReturn(Lists.newArrayList(organization)); bean.getByAlternateIdentifier(alternateIdentifier, OrganizationRoleType.GENERIC_ORGANIZATION); assertEquals(Lists.newArrayList(organization), bean.getByAlternateIdentifier(alternateIdentifier, OrganizationRoleType.GENERIC_ORGANIZATION)); } @Test public void testGetPracticeSiteType() { Organization organization = OrganizationFactory.getInstance().create(); bean.getPracticeSiteType(organization); verify(mockPracticeSiteStrategy).getPracticeSiteType(organization); } @Test public void testGetPrimaryOrganizationType() { Organization organization = OrganizationFactory.getInstance().create(); bean.getPrimaryOrganizationType(organization); verify(mockPrimaryOrganizationStrategy).getPrimaryOrganizationType(organization); } @Test public void testGetOrganizationsToBeCurated() { NesOrganizationServiceBean beanSpy = spy(bean); Organization activeOrganization = OrganizationFactory.getInstance().create(); activeOrganization.setCurationStatus(CurationStatus.ACTIVE); Organization pendingOrganization = OrganizationFactory.getInstance().create(); pendingOrganization.setCurationStatus(CurationStatus.PENDING); List<Organization> candidates = Lists.newArrayList(activeOrganization, pendingOrganization); CurationDataset curationDataset = beanSpy.getOrganizationsToBeCurated(candidates); verify(beanSpy).refreshIfStale(pendingOrganization); verify(beanSpy).refreshIfStale(activeOrganization); assertEquals(2, curationDataset.getCsvHeaders().size()); assertEquals(2, curationDataset.getDisplayHeaderKeys().size()); assertEquals(1, curationDataset.getRows().size()); List<String> row = curationDataset.getRows().get(0); String expectedExternalId = getExtension(pendingOrganization.getExternalId()); assertEquals(expectedExternalId, row.get(0)); assertEquals(pendingOrganization.getName(), row.get(1)); } private String getExtension(String externalId) { return new NesId(externalId).getExtension(); } @Test public void testGetRolesToBeCurated() { AbstractOrganizationRole pendingLab = createLab(CurationStatus.PENDING); AbstractOrganizationRole activeLab = createLab(CurationStatus.ACTIVE); NesOrganizationServiceBean beanSpy = spy(bean); List<AbstractOrganizationRole> candidates = Lists.newArrayList(activeLab, pendingLab); CurationDataset curationDataset = beanSpy.getRolesToBeCurated(candidates); verify(beanSpy).refreshIfStale(pendingLab.getOrganization()); verify(beanSpy).refreshIfStale(activeLab.getOrganization()); assertEquals(4, curationDataset.getCsvHeaders().size()); assertEquals(4, curationDataset.getDisplayHeaderKeys().size()); assertEquals(1, curationDataset.getRows().size()); List<String> row = curationDataset.getRows().get(0); String expectedExternalId = getExtension(pendingLab.getExternalId()); HealthCareFacilityData externalData = (HealthCareFacilityData) pendingLab.getOrganization() .getExternalData(); String expectedPlayerId = getExtension(externalData.getPlayerId()); assertEquals(expectedExternalId, row.get(0)); assertEquals(NesIIRoot.HEALTH_CARE_FACILITY.getDisplay(), row.get(1)); assertEquals(expectedPlayerId, row.get(2)); assertEquals(pendingLab.getOrganization().getName(), row.get(3)); } private ClinicalLaboratory createLab(CurationStatus status) { Organization organization = OrganizationFactory.getInstance().create(); HealthCareFacilityData externalData = new HealthCareFacilityData(); externalData.setExternalId(new NesId(NesIIRoot.HEALTH_CARE_FACILITY, getUniqueString()).toString()); externalData.setPlayerId(new NesId(NesIIRoot.ORGANIZATION, getUniqueString()).toString()); externalData.setLastNesRefresh(new Date()); organization.setExternalData(externalData); organization.setCurationStatus(status); ClinicalLaboratory lab = new ClinicalLaboratory(); organization.addRole(lab); return lab; } }