Java tutorial
/** * The software subject to this notice and license includes both human readable * source code form and machine readable, binary, object code form. The NCI OCR * Software was developed in conjunction with the National Cancer Institute * (NCI) by NCI employees and 5AM Solutions, Inc. (5AM). To the extent * government employees are authors, any rights in such works shall be subject * to Title 17 of the United States Code, section 105. * * This NCI OCR Software License (the License) is between NCI and You. You (or * Your) shall mean a person or an entity, and all other entities that control, * are controlled by, or are under common control with the entity. Control for * purposes of this definition means (i) the direct or indirect power to cause * the direction or management of such entity, whether by contract or otherwise, * or (ii) ownership of fifty percent (50%) or more of the outstanding shares, * or (iii) beneficial ownership of such entity. * * This License is granted provided that You agree to the conditions described * below. NCI grants You a non-exclusive, worldwide, perpetual, fully-paid-up, * no-charge, irrevocable, transferable and royalty-free right and license in * its rights in the NCI OCR Software to (i) use, install, access, operate, * execute, copy, modify, translate, market, publicly display, publicly perform, * and prepare derivative works of the NCI OCR Software; (ii) distribute and * have distributed to and by third parties the NCI OCR Software and any * modifications and derivative works thereof; and (iii) sublicense the * foregoing rights set out in (i) and (ii) to third parties, including the * right to license such rights to further third parties. For sake of clarity, * and not by way of limitation, NCI shall have no right of accounting or right * of payment from You or Your sub-licensees for the rights granted under this * License. This License is granted at no charge to You. * * Your redistributions of the source code for the Software must retain the * above copyright notice, this list of conditions and the disclaimer and * limitation of liability of Article 6, below. Your redistributions in object * code form must reproduce the above copyright notice, this list of conditions * and the disclaimer of Article 6 in the documentation and/or other materials * provided with the distribution, if any. * * Your end-user documentation included with the redistribution, if any, must * include the following acknowledgment: This product includes software * developed by 5AM and the National Cancer Institute. If You do not include * such end-user documentation, You shall include this acknowledgment in the * Software itself, wherever such third-party acknowledgments normally appear. * * You may not use the names "The National Cancer Institute", "NCI", or "5AM" * to endorse or promote products derived from this Software. This License does * not authorize You to use any trademarks, service marks, trade names, logos or * product names of either NCI or 5AM, except as required to comply with the * terms of this License. * * For sake of clarity, and not by way of limitation, You may incorporate this * Software into Your proprietary programs and into any third party proprietary * programs. However, if You incorporate the Software into third party * proprietary programs, You agree that You are solely responsible for obtaining * any permission from such third parties required to incorporate the Software * into such third party proprietary programs and for informing Your * sub-licensees, including without limitation Your end-users, of their * obligation to secure any required permissions from such third parties before * incorporating the Software into such third party proprietary software * programs. In the event that You fail to obtain such permissions, You agree * to indemnify NCI for any claims against NCI by such third parties, except to * the extent prohibited by law, resulting from Your failure to obtain such * permissions. * * For sake of clarity, and not by way of limitation, You may add Your own * copyright statement to Your modifications and to the derivative works, and * You may provide additional or different license terms and conditions in Your * sublicenses of modifications of the Software, or any derivative works of the * Software as a whole, provided Your use, reproduction, and distribution of the * Work otherwise complies with the conditions stated in this License. * * THIS SOFTWARE IS PROVIDED "AS IS," AND ANY EXPRESSED OR IMPLIED WARRANTIES, * (INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, * NON-INFRINGEMENT AND FITNESS FOR A PARTICULAR PURPOSE) ARE DISCLAIMED. IN NO * EVENT SHALL THE NATIONAL CANCER INSTITUTE, 5AM SOLUTIONS, INC. OR THEIR * AFFILIATES BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR * OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package gov.nih.nci.firebird.test.data; import gov.nih.nci.firebird.data.AbstractCredential; import gov.nih.nci.firebird.data.AbstractProtocolRegistration; import gov.nih.nci.firebird.data.AnnualRegistration; import gov.nih.nci.firebird.data.CertificateType; import gov.nih.nci.firebird.data.ClinicalLaboratory; import gov.nih.nci.firebird.data.Degree; import gov.nih.nci.firebird.data.InstitutionalReviewBoard; import gov.nih.nci.firebird.data.InvestigatorProfile; import gov.nih.nci.firebird.data.LaboratoryCertificate; import gov.nih.nci.firebird.data.LaboratoryCertificateType; import gov.nih.nci.firebird.data.OrderingDesignee; import gov.nih.nci.firebird.data.Organization; import gov.nih.nci.firebird.data.OrganizationAssociation; import gov.nih.nci.firebird.data.OrganizationRoleType; import gov.nih.nci.firebird.data.Person; import gov.nih.nci.firebird.data.PracticeSite; import gov.nih.nci.firebird.data.PracticeSiteType; import gov.nih.nci.firebird.data.PrimaryOrganization; import gov.nih.nci.firebird.data.PrimaryOrganizationType; import gov.nih.nci.firebird.data.ShippingDesignee; import gov.nih.nci.firebird.data.SubInvestigator; import gov.nih.nci.firebird.data.TrainingCertificate; import gov.nih.nci.firebird.exception.AssociationAlreadyExistsException; import gov.nih.nci.firebird.exception.CredentialAlreadyExistsException; import gov.nih.nci.firebird.test.CredentialFactory; import gov.nih.nci.firebird.test.FirebirdFileFactory; import gov.nih.nci.firebird.test.ValueGenerator; import gov.nih.nci.firebird.test.nes.ExternalEntityTestDataSource; import gov.nih.nci.firebird.test.nes.TargetGridResources; import java.util.Date; import java.util.Iterator; import org.apache.commons.lang3.time.DateUtils; import org.hibernate.Hibernate; import com.google.common.collect.Iterators; public class ProfileBuilder extends AbstractDataComponentBuilder<InvestigatorProfile> { private final CredentialTypesData credentialTypesData; private InvestigatorProfile profile = new InvestigatorProfile(); private Iterator<PracticeSiteType> PRACTICE_SITE_TYPES = Iterators.cycle(PracticeSiteType.values()); protected ProfileBuilder(TargetGridResources gridResources, TestDataLoader dataLoader, CredentialTypesData credentialTypesData) { super(gridResources, dataLoader); this.credentialTypesData = credentialTypesData; profile.setPerson(getTestDataSource().getPerson()); Organization primaryOrganization = getGridResources().getTestDataSource().getPracticeSite() .getOrganization(); profile.setPrimaryOrganization( new PrimaryOrganization(primaryOrganization, PrimaryOrganizationType.HEALTH_CARE_FACILITY)); } public ProfileBuilder complete() { try { setUpAssociatedOrganizations(); setupDesigneeAssociations(); setUpCredentialsNoMd(); } catch (AssociationAlreadyExistsException e) { throw new IllegalStateException("Couldn't create complete profile for investigator", e); } catch (CredentialAlreadyExistsException e) { throw new IllegalStateException(e); } return this; } public ProfileBuilder withPerson(Person person) { profile.setPerson(person); return this; } private void setUpAssociatedOrganizations() throws AssociationAlreadyExistsException { addPracticeSite(); addPracticeSite(); addClinicalLab(); addClinicalLab(); profile.addOrganizationAssociation(getTestDataSource().getIrb().getOrganization(), OrganizationRoleType.IRB); profile.addOrganizationAssociation(createNewIrb().getOrganization(), OrganizationRoleType.IRB); } private void addPracticeSite() throws AssociationAlreadyExistsException { OrganizationAssociation association = profile.addOrganizationAssociation(setUpPracticeSiteWithOhrp(), OrganizationRoleType.PRACTICE_SITE); ((PracticeSite) association.getOrganizationRole()).setType(PRACTICE_SITE_TYPES.next()); } private void addClinicalLab() throws AssociationAlreadyExistsException { OrganizationAssociation association = profile.addOrganizationAssociation( getTestDataSource().getClinicalLab().getOrganization(), OrganizationRoleType.CLINICAL_LABORATORY); ClinicalLaboratory lab = (ClinicalLaboratory) association.getOrganizationRole(); LaboratoryCertificate certificate = new LaboratoryCertificate(LaboratoryCertificateType.CAP); certificate.setCertificateFile(FirebirdFileFactory.getInstance().create()); certificate.setEffectiveDate(DateUtils.addYears(new Date(), -1)); certificate.setExpirationDate(DateUtils.addYears(new Date(), 1)); lab.addCertificate(certificate); } private void setupDesigneeAssociations() throws AssociationAlreadyExistsException { profile.addOrderingDesignee(getTestDataSource().getPerson()); profile.addOrderingDesignee(getTestDataSource().getPerson()); ShippingDesignee shippingDesignee = new ShippingDesignee(profile, getTestDataSource().getPerson()); shippingDesignee.setOrganization(getNesOrganization()); shippingDesignee.setShippingAddress(ValueGenerator.getUniqueAddress()); profile.setShippingDesignee(shippingDesignee); } private ExternalEntityTestDataSource getTestDataSource() { return getGridResources().getTestDataSource(); } private Organization setUpPracticeSiteWithOhrp() { PracticeSite practiceSite = getTestDataSource().getPracticeSite(); practiceSite.setOhrpAssuranceNumber(ValueGenerator.getUniqueOhrpNumber()); return practiceSite.getOrganization(); } private InstitutionalReviewBoard createNewIrb() { InstitutionalReviewBoard irb = new InstitutionalReviewBoard(); Organization organization = getNesOrganization(); if (organization.getRole(OrganizationRoleType.IRB) == null) { organization.addRole(irb); } else { irb.setOrganization(organization); } return irb; } private Organization getNesOrganization() { return getTestDataSource().getOrganization(); } private void setUpCredentialsNoMd() throws CredentialAlreadyExistsException { Degree degree = CredentialFactory.getInstance() .createDegree(credentialTypesData.getNonMdEquivalentDegreeType(), getNesOrganization()); degree.setIssuer(getNesOrganization()); profile.addCredential(degree); setUpCredentials(); } private void setUpCredentials() throws CredentialAlreadyExistsException { profile.addCredential(CredentialFactory.getInstance().createLicense(credentialTypesData.getLicenseType())); profile.addCredential( CredentialFactory.getInstance().createSpecialty(credentialTypesData.getSpecialtyType())); profile.addCredential( CredentialFactory.getInstance().createCertification(credentialTypesData.getCertificationType())); profile.addCredential(CredentialFactory.getInstance().createFellowship(getNesOrganization(), credentialTypesData.getMedicalSubSpecialty())); profile.addCredential(CredentialFactory.getInstance().createInternship(getNesOrganization(), credentialTypesData.getMedicalSpecialty())); profile.addCredential(CredentialFactory.getInstance().createInternship(getNesOrganization(), credentialTypesData.getMedicalSpecialty())); profile.addCredential(CredentialFactory.getInstance().createResidency(getNesOrganization(), credentialTypesData.getMedicalSpecialty())); profile.addCredential(CredentialFactory.getInstance().createWorkHistory(getNesOrganization())); profile.addCredential(CredentialFactory.getInstance().createWorkHistory(getNesOrganization())); TrainingCertificate certificate = CredentialFactory.getInstance() .createCertificate(CertificateType.HUMAN_RESEARCH_CERTIFICATE, getNesOrganization()); profile.addCredential(certificate); } @Override void reload() { super.reload(); Hibernate.initialize(profile.getPrimaryOrganization()); for (AbstractProtocolRegistration protocolRegistration : profile.getCurrentProtocolRegistrations()) { AbstractProtocolRegistrationBuilder.initialize(protocolRegistration); } for (AnnualRegistration annualRegistration : profile.getAnnualRegistrations()) { AnnualRegistrationBuilder.initialize(annualRegistration); } for (AbstractCredential<?> credential : profile.getCredentials()) { Hibernate.initialize(credential); } for (SubInvestigator subInvestigator : profile.getSubInvestigators()) { Hibernate.initialize(subInvestigator); } for (OrganizationAssociation association : profile.getOrganizationAssociations()) { Hibernate.initialize(association); } for (OrderingDesignee designee : profile.getOrderingDesignees()) { Hibernate.initialize(designee); } } @Override InvestigatorProfile getObject() { return profile; } @Override void setObject(InvestigatorProfile profile) { this.profile = profile; } }