index.IndexOmimtsv.java Source code

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Here is the source code for index.IndexOmimtsv.java

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package index;

import java.io.BufferedReader;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.nio.charset.StandardCharsets;
import java.nio.file.FileVisitResult;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.nio.file.SimpleFileVisitor;
import java.nio.file.attribute.BasicFileAttributes;
import java.util.Date;

import org.apache.lucene.analysis.Analyzer;
import org.apache.lucene.analysis.standard.StandardAnalyzer;
import org.apache.lucene.document.LongPoint;
import org.apache.lucene.document.StoredField;
import org.apache.lucene.document.Document;
import org.apache.lucene.document.Field;
import org.apache.lucene.document.StringField;
import org.apache.lucene.document.TextField;
import org.apache.lucene.index.IndexWriter;
import org.apache.lucene.index.IndexWriterConfig.OpenMode;
import org.apache.lucene.index.IndexWriterConfig;
import org.apache.lucene.index.Term;
import org.apache.lucene.store.Directory;
import org.apache.lucene.store.FSDirectory;

public class IndexOmimtsv {

    /*
    002 * Licensed to the Apache Software Foundation (ASF) under one or more
    003 * contributor license agreements.  See the NOTICE file distributed with
    004 * this work for additional information regarding copyright ownership.
    005 * The ASF licenses this file to You under the Apache License, Version 2.0
    006 * (the "License"); you may not use this file except in compliance with
    007 * the License.  You may obtain a copy of the License at
    008 *
    009 *     http://www.apache.org/licenses/LICENSE-2.0
    010 *
    011 * Unless required by applicable law or agreed to in writing, software
    012 * distributed under the License is distributed on an "AS IS" BASIS,
    013 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    014 * See the License for the specific language governing permissions and
    015 * limitations under the License.
    016 */

    /** Index all text files under a directory.
     * <p>
     * This is a command-line application demonstrating simple Lucene indexing.
     * Run it with no command-line arguments for usage information.
     */

    private IndexOmimtsv() {
    }

    /** Index all text files under a directory. */
    public static void main(String[] args) {

        Date start = new Date();
        final Path docDir = Paths.get("F:/Ecole(Telecom)/cours telecom/Projet_GMD/bases/omimtsv.tsv");
        //final Path docDir = Paths.get("C:/Users/lulu/Desktop/Projet/Donnes/stitch/chemical.sources.v5.0.tsv");

        try {

            System.out.println("Indexing to directory '"
                    + "C:/Users/gauthier/Desktop/TELECOM/2A/GMD/Projet/indexOmimtsv" + "'...");

            Directory dir = FSDirectory
                    .open(Paths.get("F:/Ecole(Telecom)/cours telecom/Projet_GMD/indexs/indexOmimtsv"));
            //Directory dir = FSDirectory.open(Paths.get("C:/Users/lulu/Desktop/Projet/Donnes/stitch"));
            Analyzer analyzer = new StandardAnalyzer();
            IndexWriterConfig iwc = new IndexWriterConfig(analyzer);
            iwc.setOpenMode(OpenMode.CREATE);

            // Optional: for better indexing performance, if you
            // are indexing many documents, increase the RAM
            // buffer.  But if you do this, increase the max heap
            // size to the JVM (eg add -Xmx512m or -Xmx1g):
            //
            // iwc.setRAMBufferSizeMB(256.0);

            IndexWriter writer = new IndexWriter(dir, iwc);
            indexDocs(writer, docDir);

            // NOTE: if you want to maximize search performance,
            // you can optionally call forceMerge here.  This can be
            // a terribly costly operation, so generally it's only
            // worth it when your index is relatively static (ie
            // you're done adding documents to it):
            //
            // writer.forceMerge(1);

            writer.close();

            Date end = new Date();
            System.out.println(end.getTime() - start.getTime() + " total milliseconds");

        } catch (IOException e) {
            System.out.println(" caught a " + e.getClass() + "\n with message: " + e.getMessage());
        }
    }

    /*
    135   * Indexes the given file using the given writer, or if a directory is given,
    136   * recurses over files and directories found under the given directory.
    137   * 
    138   * NOTE: This method indexes one document per input file.  This is slow.  For good
    139   * throughput, put multiple documents into your input file(s).  An example of this is
    140   * in the benchmark module, which can create "line doc" files, one document per line,
    141   * using the
    142   * <a href="../../../../../contrib-benchmark/org/apache/lucene/benchmark/byTask/tasks/WriteLineDocTask.html"
    143   * >WriteLineDocTask</a>.
    144   *  
    145   * @param writer Writer to the index where the given file/dir info will be stored
    146   * @param path The file to index, or the directory to recurse into to find files to index
    147   * @throws IOException If there is a low-level I/O error
    148   */
    static void indexDocs(final IndexWriter writer, Path path) throws IOException {
        if (Files.isDirectory(path)) {
            Files.walkFileTree(path, new SimpleFileVisitor<Path>() {
                @Override
                public FileVisitResult visitFile(Path file, BasicFileAttributes attrs) throws IOException {
                    try {
                        indexDoc(writer, file, attrs.lastModifiedTime().toMillis());
                    } catch (IOException ignore) {
                        // don't index files that can't be read.
                    }
                    return FileVisitResult.CONTINUE;
                }
            });
        } else {
            indexDoc(writer, path, Files.getLastModifiedTime(path).toMillis());
        }
    }

    /** Indexes a single document */
    static void indexDoc(IndexWriter writer, Path file, long lastModified) throws IOException {
        try (InputStream stream = Files.newInputStream(file)) {
            // make a new, empty document
            Document doc = new Document();

            // Add the path of the file as a field named "path".  Use a
            // field that is indexed (i.e. searchable), but don't tokenize 
            // the field into separate words and don't index term frequency
            // or positional information:
            Field pathField = new StringField("path", file.toString(), Field.Store.YES);
            doc.add(pathField);

            // Add the last modified date of the file a field named "modified".
            // Use a LongPoint that is indexed (i.e. efficiently filterable with
            // PointRangeQuery).  This indexes to milli-second resolution, which
            // is often too fine.  You could instead create a number based on
            // year/month/day/hour/minutes/seconds, down the resolution you require.
            // For example the long value 2011021714 would mean
            // February 17, 2011, 2-3 PM.
            doc.add(new LongPoint("20110227030432", lastModified));

            // Add the contents of the file to a field named "contents".  Specify a Reader,
            // so that the text of the file is tokenized and indexed, but not stored.
            // Note that FileReader expects the file to be in UTF-8 encoding.
            // If that's not the case searching for special characters will fail.
            InputStreamReader ipsr = new InputStreamReader(stream);
            BufferedReader br = new BufferedReader(ipsr);
            String line = br.readLine();
            int cpt = 0;
            while ((line = br.readLine()) != null) {
                String[] tokens = line.trim().split("\t");
                if (tokens.length > 6) {
                    String id = tokens[0].split("/")[tokens[0].split("/").length - 1].trim();
                    if (id.matches("^[0-9]*")) {
                        doc = new Document();
                        cpt++;
                        doc.add(new TextField("ID", id, Field.Store.NO));
                        if (!tokens[5].trim().matches("^C[0-9].*")) {
                            for (String token : tokens) {
                                if (token.trim().matches("^C[0-9].*")) {
                                    doc.add(new StoredField("CUI", token.trim()));
                                    break;
                                }
                            }
                            if (doc.getFields().size() != 2)
                                doc.add(new StoredField("CUI", ""));
                        } else
                            doc.add(new StoredField("CUI", tokens[5].trim()));
                        doc.add(new StoredField("Label", tokens[1].trim()));
                        writer.addDocument(doc);
                    }
                }
            }
            System.out.println("Nombre d'lments : " + cpt);
            if (writer.getConfig().getOpenMode() == OpenMode.CREATE) {
                // New index, so we just add the document (no old document can be there):
                System.out.println("adding " + file);
                writer.addDocument(doc);
            } else {
                // Existing index (an old copy of this document may have been indexed) so 
                // we use updateDocument instead to replace the old one matching the exact 
                // path, if present:
                System.out.println("updating " + file);
                writer.updateDocument(
                        new Term("F:/Ecole(Telecom)/cours telecom/Projet_GMD/bases/chemical.sources.v5.0.tsv",
                                file.toString()),
                        doc);
            }
        }
    }
}