info.pancancer.arch3.beans.Job.java Source code

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Here is the source code for info.pancancer.arch3.beans.Job.java

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/*
 *     Consonance - workflow software for multiple clouds
 *     Copyright (C) 2016 OICR
 *
 *     This program is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 *
 *     This program is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 *
 *     You should have received a copy of the GNU General Public License
 *     along with this program.  If not, see <http://www.gnu.org/licenses/>.
 *
 */

package info.pancancer.arch3.beans;

import com.fasterxml.jackson.annotation.JsonIgnore;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import com.fasterxml.jackson.core.JsonParseException;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import java.io.IOException;
import java.sql.Timestamp;
import java.util.HashMap;
import java.util.Map;
import java.util.UUID;

/**
 * Created by boconnor on 2015-04-22.
 */
@JsonIgnoreProperties(ignoreUnknown = true)
public class Job {

    private JobState state = JobState.START;
    private String uuid = UUID.randomUUID().toString().toLowerCase();
    private String workflow;
    private String vmUuid;
    private String workflowVersion;
    private String workflowPath;
    private String jobHash;
    private String messageType;
    private Map<String, String> ini = new HashMap<>();
    private Timestamp createTs;
    private Timestamp updateTs;
    private String stdout;
    private String stderr;

    public Job(String workflow, String workflowVersion, String workflowPath, String jobHash,
            Map<String, String> ini) {
        this.workflow = workflow;
        this.workflowVersion = workflowVersion;
        this.workflowPath = workflowPath;
        this.jobHash = jobHash;
        this.ini = ini;
    }

    public Job() {
        super();
    }

    public String toJSON() {
        ObjectMapper mapper = new ObjectMapper();
        mapper.setSerializationInclusion(JsonInclude.Include.NON_NULL);
        try {
            return mapper.writerWithDefaultPrettyPrinter().writeValueAsString(this);
        } catch (JsonProcessingException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
            return null;
        }
    }

    public Job fromJSON(String json) {
        ObjectMapper mapper = new ObjectMapper();
        mapper.setSerializationInclusion(JsonInclude.Include.NON_NULL);
        try {
            return mapper.readValue(json, Job.class);
        } catch (JsonParseException e) {
            // TODO: improve logging for JSON parse errors.
            System.out.println("JSON parsing error: " + e.getMessage());
            e.printStackTrace();
            return null;
        } catch (IOException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
            return null;
        }

    }

    @JsonProperty("job_uuid")
    public String getUuid() {
        return uuid;
    }

    public void setUuid(String uuid) {
        this.uuid = uuid;
    }

    @JsonProperty("arguments")
    public Map<String, String> getIni() {
        return ini;
    }

    @JsonIgnore
    public String getIniStr() {
        StringBuilder sb = new StringBuilder();
        for (String key : this.ini.keySet()) {
            sb.append(key).append("=").append(this.ini.get(key)).append("\n");
        }
        return (sb.toString());
    }

    public void setIni(Map<String, String> ini) {
        this.ini = ini;
    }

    @JsonProperty("job_hash")
    public String getJobHash() {
        return jobHash;
    }

    public void setJobHash(String jobHash) {
        this.jobHash = jobHash;
    }

    @JsonProperty("workflow_version")
    public String getWorkflowVersion() {
        return workflowVersion;
    }

    public void setWorkflowVersion(String workflowVersion) {
        this.workflowVersion = workflowVersion;
    }

    @JsonProperty("workflow_name")
    public String getWorkflow() {
        return workflow;
    }

    public void setWorkflow(String workflow) {
        this.workflow = workflow;
    }

    // Not sure what this was for, ignore it for now.
    @JsonIgnore
    public JobState getState() {
        return state;
    }

    public void setState(JobState state) {
        this.state = state;
    }

    @JsonProperty("workflow_path")
    public String getWorkflowPath() {
        return workflowPath;
    }

    public void setWorkflowPath(String workflowPath) {
        this.workflowPath = workflowPath;
    }

    @JsonProperty("message_type")
    public String getMessageType() {
        return messageType;
    }

    public void setMessageType(String messageType) {
        this.messageType = messageType;
    }

    @JsonProperty("create_ts")
    public Timestamp getCreateTs() {
        return createTs;
    }

    public void setCreateTs(Timestamp createTs) {
        this.createTs = createTs;
    }

    @JsonProperty("update_ts")
    public Timestamp getUpdateTs() {
        return updateTs;
    }

    public void setUpdateTs(Timestamp updateTs) {
        this.updateTs = updateTs;
    }

    @JsonProperty("vmuuid")
    public String getVmUuid() {
        return vmUuid;
    }

    public void setVmUuid(String vmUuid) {
        this.vmUuid = vmUuid;
    }

    /**
     * @return the stdout
     */
    public String getStdout() {
        return stdout;
    }

    /**
     * @param stdout
     *            the stdout to set
     */
    public void setStdout(String stdout) {
        this.stdout = stdout;
    }

    /**
     * @return the stderr
     */
    public String getStderr() {
        return stderr;
    }

    /**
     * @param stderr
     *            the stderr to set
     */
    public void setStderr(String stderr) {
        this.stderr = stderr;
    }
}