io.scigraph.owlapi.loader.OwlLoadConfigurationLoaderTest.java Source code

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Here is the source code for io.scigraph.owlapi.loader.OwlLoadConfigurationLoaderTest.java

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/**
 * Copyright (C) 2014 The SciGraph authors
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package io.scigraph.owlapi.loader;

import static org.hamcrest.Matchers.equalTo;
import static org.hamcrest.Matchers.is;
import static org.junit.Assert.assertThat;
import io.scigraph.owlapi.curies.CurieUtil;
import io.scigraph.owlapi.loader.OwlLoadConfiguration;
import io.scigraph.owlapi.loader.OwlLoadConfigurationLoader;
import io.scigraph.owlapi.loader.OwlLoadConfiguration.MappedProperty;

import java.io.File;
import java.io.IOException;
import java.net.URISyntaxException;
import java.net.URL;
import java.util.List;

import org.junit.Before;
import org.junit.Test;

import com.fasterxml.jackson.core.JsonParseException;
import com.fasterxml.jackson.databind.JsonMappingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.fasterxml.jackson.dataformat.yaml.YAMLFactory;

public class OwlLoadConfigurationLoaderTest {

    OwlLoadConfiguration rawConfig;
    OwlLoadConfiguration loaderConfig;
    CurieUtil curieUtil;

    @Before
    public void setup() throws URISyntaxException, JsonParseException, JsonMappingException, IOException {
        URL url = this.getClass().getResource("/pizzaExample.yaml");
        File pizzaFile = new File(url.getFile());

        assertThat(pizzaFile.exists(), is(true));
        ObjectMapper mapper = new ObjectMapper(new YAMLFactory());
        rawConfig = mapper.readValue(pizzaFile, OwlLoadConfiguration.class);

        OwlLoadConfigurationLoader owlLoadConfigurationLoader = new OwlLoadConfigurationLoader(pizzaFile);
        loaderConfig = owlLoadConfigurationLoader.loadConfig();
        curieUtil = new CurieUtil(rawConfig.getGraphConfiguration().getCuries());
    }

    @Test
    public void supportCuriesForCategories() {
        // assert that there's a curie to resolve
        String unresolvedCurie = rawConfig.getCategories().get("pizza:NamedPizza");
        assertThat(unresolvedCurie, equalTo("pizza"));

        // assert that categories are full IRIs
        String resolvedCurie = loaderConfig.getCategories()
                .get("http://www.co-ode.org/ontologies/pizza/pizza.owl#NamedPizza");
        assertThat(resolvedCurie, equalTo("pizza"));
    }

    @Test
    public void supportCuriesForMappedProperties() {
        Boolean rawConfigContainsCurie = false;
        List<MappedProperty> unresolvedMappedProperties = rawConfig.getMappedProperties();
        for (MappedProperty mappedProperty : unresolvedMappedProperties) {
            for (String property : mappedProperty.getProperties()) {
                rawConfigContainsCurie = rawConfigContainsCurie || curieUtil.getIri(property).isPresent();
            }
        }
        assertThat("Test file does not contain any curies", rawConfigContainsCurie, equalTo(true));

        Boolean loaderConfigContainsCurie = false;
        List<MappedProperty> resolvedMappedProperties = loaderConfig.getMappedProperties();
        for (MappedProperty mappedProperty : resolvedMappedProperties) {
            for (String property : mappedProperty.getProperties()) {
                loaderConfigContainsCurie = loaderConfigContainsCurie || curieUtil.getIri(property).isPresent();
            }
        }
        assertThat("MappedProperty curies have not been resolved properly", loaderConfigContainsCurie,
                equalTo(false));
    }
}