org.hivdrc.client.dialogs.PredictProgressDialog.java Source code

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Here is the source code for org.hivdrc.client.dialogs.PredictProgressDialog.java

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/*******************************************************************************
 * Copyright (c) 2005-2006 Bioclipse Project
 * All rights reserved. This program and the accompanying materials
 * are made available under the terms of the Eclipse Public License v1.0
 * which accompanies this distribution, and is available at
 * http://www.eclipse.org/legal/epl-v10.html
 *
 * Contributors:
 *     Ola Spjuth - core API and implementation
 *******************************************************************************/

package org.hivdrc.client.dialogs;

import java.rmi.RemoteException;

import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.jface.operation.IRunnableWithProgress;

/**
 * This class represents a long running operation to delete IBioResources in an ArrayList.
 * If list contains folders, first remove the subResources of the folder and then the folder itself.
 * 
 * @author ola
 */
public class PredictProgressDialog implements IRunnableWithProgress {

    double[] predictAnswer;
    String[] drugs;
    String sequence;

    public String[] getDrugs() {
        return drugs;
    }

    public void setDrugs(String[] drugs) {
        this.drugs = drugs;
    }

    /**
     * Constructor
     * @param sequence Protease sequence to predict susceptibility for
     */
    public PredictProgressDialog(String sequence) {
        super();
        this.sequence = sequence;
    }

    public double[] getPredictAnswer() {
        return predictAnswer;
    }

    public void setPredictAnswer(double[] predictAnswer) {
        this.predictAnswer = predictAnswer;
    }

    /**
     * Runs the long running operation
     * 
     * @param monitor the progress monitor
     * @throws InterruptedException
     */
    public void run(IProgressMonitor monitor) throws InterruptedException {

        //Step through and delete all these files
        monitor.beginTask("Predicting susceptibility using the HIV Protease Susceptibility Web service", 10);

        //Here we should call the XMPP service
        //FIXME

        /*
        try {
            
           //Get drugs from Web service that will be used in prediction
           //*******************************
           monitor.subTask("Contacting web service");
           drugs=loc.getPredict().getDrugs();
               
           monitor.worked(5);
            
           //Do prediction using Web service
           //*******************************
           monitor.subTask("Predicting");
        //         System.out.println("Predicting susceptibility for sequence: " + sequence);
           predictAnswer=loc.getPredict().doPrediction(sequence);
               
        } catch (RemoteException e) {
           throw new InterruptedException("Could not connect to remote server. Server might be down.");
        }
            
        */
        monitor.done();
        if (monitor.isCanceled())
            throw new InterruptedException("Web service was cancelled");
    }

}