org.mzd.shap.analysis.blast.bean.Hit.java Source code

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Here is the source code for org.mzd.shap.analysis.blast.bean.Hit.java

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/**
 *
 * Copyright 2010 Matthew Z DeMaere.
 * 
 * This file is part of SHAP.
 *
 * SHAP is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * SHAP is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with SHAP.  If not, see <http://www.gnu.org/licenses/>.
 * 
 */
package org.mzd.shap.analysis.blast.bean;

import java.util.ArrayList;
import java.util.List;

import org.apache.commons.lang.builder.ToStringBuilder;
import org.apache.commons.lang.builder.ToStringStyle;

import com.thoughtworks.xstream.annotations.XStreamAlias;

@XStreamAlias("Hit")
public class Hit {
    @XStreamAlias("Hit_num")
    private Integer number;
    @XStreamAlias("Hit_id")
    private String id;
    @XStreamAlias("Hit_def")
    private String definition;
    @XStreamAlias("Hit_accession")
    private String accession;
    @XStreamAlias("Hit_len")
    private Integer length;
    @XStreamAlias("Hit_hsps")
    private List<Hsp> hsps = new ArrayList<Hsp>();

    @Override
    public String toString() {
        return new ToStringBuilder(this, ToStringStyle.MULTI_LINE_STYLE).append("number", getNumber())
                .append("id", getId()).append("definition", getDefinition()).append("accession", getAccession())
                .append("length", getLength()).append("hsps", getHsps()).toString();
    }

    public Integer getNumber() {
        return number;
    }

    public void setNumber(Integer number) {
        this.number = number;
    }

    public String getId() {
        return id;
    }

    public void setId(String id) {
        this.id = id;
    }

    public String getDefinition() {
        return definition;
    }

    public void setDefinition(String definition) {
        this.definition = definition;
    }

    public String getAccession() {
        return accession;
    }

    public void setAccession(String accession) {
        this.accession = accession;
    }

    public Integer getLength() {
        return length;
    }

    public void setLength(Integer length) {
        this.length = length;
    }

    public List<Hsp> getHsps() {
        return hsps;
    }

    public void setHsps(List<Hsp> hsps) {
        this.hsps = hsps;
    }

    public void addHsp(Hsp hsp) {
        getHsps().add(hsp);
    }

}