org.mzd.shap.analysis.blast.bean.Statistics.java Source code

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Here is the source code for org.mzd.shap.analysis.blast.bean.Statistics.java

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/**
 *
 * Copyright 2010 Matthew Z DeMaere.
 * 
 * This file is part of SHAP.
 *
 * SHAP is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * SHAP is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with SHAP.  If not, see <http://www.gnu.org/licenses/>.
 * 
 */
package org.mzd.shap.analysis.blast.bean;

import org.apache.commons.lang.builder.ToStringBuilder;
import org.apache.commons.lang.builder.ToStringStyle;

import com.thoughtworks.xstream.annotations.XStreamAlias;

@XStreamAlias("Statistics")
public class Statistics {
    @XStreamAlias("Statistics_db-num")
    private Long numberSequences;
    @XStreamAlias("Statistics_db-len")
    private Long databaseLength;
    @XStreamAlias("Statistics_hsp-len")
    private Integer hspLength;
    @XStreamAlias("Statistics_eff-space")
    private Double effectiveSearchSpace;
    @XStreamAlias("Statistics_kappa")
    private Double kappa;
    @XStreamAlias("Statistics_lambda")
    private Double lambda;
    @XStreamAlias("Statistics_entropy")
    private Double entropy;

    @Override
    public String toString() {
        return new ToStringBuilder(this, ToStringStyle.MULTI_LINE_STYLE)
                .append("numberSequences", getNumberSequences()).append("databaseLength", getDatabaseLength())
                .append("hspLength", getHspLength()).append("effectiveSearchSapce", getEffectiveSearchSpace())
                .append("kappa", getKappa()).append("lambda", getLambda()).append("entropy", getEntropy())
                .toString();
    }

    public Long getNumberSequences() {
        return numberSequences;
    }

    public void setNumberSequences(Long numberSequences) {
        this.numberSequences = numberSequences;
    }

    public Long getDatabaseLength() {
        return databaseLength;
    }

    public void setDatabaseLength(Long databaseLength) {
        this.databaseLength = databaseLength;
    }

    public Integer getHspLength() {
        return hspLength;
    }

    public void setHspLength(Integer hspLength) {
        this.hspLength = hspLength;
    }

    public Double getEffectiveSearchSpace() {
        return effectiveSearchSpace;
    }

    public void setEffectiveSearchSpace(Double effectiveSearchSpace) {
        this.effectiveSearchSpace = effectiveSearchSpace;
    }

    public Double getKappa() {
        return kappa;
    }

    public void setKappa(Double kappa) {
        this.kappa = kappa;
    }

    public Double getLambda() {
        return lambda;
    }

    public void setLambda(Double lambda) {
        this.lambda = lambda;
    }

    public Double getEntropy() {
        return entropy;
    }

    public void setEntropy(Double entropy) {
        this.entropy = entropy;
    }

}